HEADER TRANSFERASE/DNA 31-DEC-69 6N62 TITLE Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream TITLE 2 fork promoter DNA COMPND MOL_ID: 5; COMPND 2 MOLECULE: RNA polymerase sigma factor RpoD; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.80 ANGSTORMS DBREF 6N62 F 1 613 UNP Q0P6L9 Q0P6L9_ECOL 1 613 SEQRES 1 F 32 ARG THR ILE ARG ILE PRO VAL HIS MET ILE GLU THR ILE SEQRES 2 F 32 ASN LYS LEU ASN ARG ILE SER ARG GLN MET LEU GLN GLU SEQRES 3 F 32 MET GLY ARG GLU PRO THR ATOM 1 N ARG F 448 -51.815 39.632 -37.401 1.00152.80 ATOM 2 CA ARG F 448 -52.753 38.764 -38.097 1.00155.20 ATOM 3 C ARG F 448 -52.591 38.904 -39.604 1.00161.44 ATOM 4 O ARG F 448 -52.429 40.011 -40.124 1.00157.73 ATOM 5 CB ARG F 448 -54.190 39.102 -37.696 1.00154.94 ATOM 6 CG ARG F 448 -54.346 39.580 -36.258 1.00157.85 ATOM 7 CD ARG F 448 -54.838 38.473 -35.340 1.00156.80 ATOM 8 NE ARG F 448 -56.118 37.926 -35.781 1.00159.07 ATOM 9 CZ ARG F 448 -56.946 37.240 -35.000 1.00158.62 ATOM 10 NH1 ARG F 448 -56.636 37.024 -33.729 1.00152.85 ATOM 11 NH2 ARG F 448 -58.088 36.776 -35.487 1.00161.68 ATOM 12 N THR F 449 -52.623 37.769 -40.307 1.00167.14 ATOM 13 CA THR F 449 -52.663 37.808 -41.766 1.00154.75 ATOM 14 C THR F 449 -53.867 38.591 -42.266 1.00146.50 ATOM 15 O THR F 449 -53.835 39.149 -43.368 1.00148.53 ATOM 16 CB THR F 449 -52.697 36.391 -42.333 1.00148.83 ATOM 17 OG1 THR F 449 -53.838 35.697 -41.816 1.00150.83 ATOM 18 CG2 THR F 449 -51.433 35.637 -41.960 1.00145.16 ATOM 19 N ILE F 450 -54.928 38.644 -41.471 1.00145.88 ATOM 20 CA ILE F 450 -56.121 39.433 -41.751 1.00150.11 ATOM 21 C ILE F 450 -56.089 40.628 -40.806 1.00153.67 ATOM 22 O ILE F 450 -56.484 40.521 -39.640 1.00152.10 ATOM 23 CB ILE F 450 -57.402 38.611 -41.581 1.00146.99 ATOM 24 CG1 ILE F 450 -57.110 37.328 -40.795 1.00145.18 ATOM 25 CG2 ILE F 450 -57.976 38.248 -42.933 1.00150.76 ATOM 26 CD1 ILE F 450 -57.130 37.500 -39.288 1.00147.17 ATOM 27 N ARG F 451 -55.597 41.764 -41.301 1.00150.22 ATOM 28 CA ARG F 451 -55.388 42.929 -40.451 1.00148.66 ATOM 29 C ARG F 451 -56.691 43.360 -39.786 1.00148.62 ATOM 30 O ARG F 451 -57.768 43.297 -40.386 1.00156.50 ATOM 31 CB ARG F 451 -54.801 44.081 -41.267 1.00149.32 ATOM 32 CG ARG F 451 -54.159 45.158 -40.412 1.00146.86 ATOM 33 CD ARG F 451 -53.805 46.381 -41.236 1.00144.06 ATOM 34 NE ARG F 451 -54.973 46.973 -41.880 1.00144.06 ATOM 35 CZ ARG F 451 -55.850 47.760 -41.264 1.00144.21 ATOM 36 NH1 ARG F 451 -55.702 48.045 -39.977 1.00144.06 ATOM 37 NH2 ARG F 451 -56.880 48.257 -41.935 1.00153.40 ATOM 38 N ILE F 452 -56.588 43.791 -38.531 1.00146.08 ATOM 39 CA ILE F 452 -57.754 44.148 -37.724 1.00146.54 ATOM 40 C ILE F 452 -57.536 45.544 -37.150 1.00152.47 ATOM 41 O ILE F 452 -56.407 45.876 -36.760 1.00144.41 ATOM 42 CB ILE F 452 -57.994 43.113 -36.611 1.00146.10 ATOM 43 CG1 ILE F 452 -58.118 41.705 -37.198 1.00148.67 ATOM 44 CG2 ILE F 452 -59.244 43.439 -35.829 1.00153.39 ATOM 45 CD1 ILE F 452 -58.265 40.621 -36.156 1.00149.17 ATOM 46 N PRO F 453 -58.559 46.402 -37.113 1.00162.34 ATOM 47 CA PRO F 453 -58.397 47.717 -36.476 1.00159.57 ATOM 48 C PRO F 453 -57.958 47.599 -35.021 1.00155.69 ATOM 49 O PRO F 453 -58.415 46.724 -34.283 1.00155.07 ATOM 50 CB PRO F 453 -59.791 48.342 -36.596 1.00166.12 ATOM 51 CG PRO F 453 -60.387 47.693 -37.797 1.00166.60 ATOM 52 CD PRO F 453 -59.842 46.289 -37.829 1.00166.76 ATOM 53 N VAL F 454 -57.066 48.508 -34.622 1.00151.11 ATOM 54 CA VAL F 454 -56.401 48.537 -33.318 1.00149.87 ATOM 55 C VAL F 454 -57.372 48.328 -32.159 1.00155.45 ATOM 56 O VAL F 454 -57.114 47.526 -31.245 1.00156.81 ATOM 57 CB VAL F 454 -55.644 49.868 -33.154 1.00145.75 ATOM 58 CG1 VAL F 454 -54.182 49.686 -33.491 1.00146.20 ATOM 59 CG2 VAL F 454 -56.264 50.942 -34.047 1.00151.19 ATOM 60 N HIS F 455 -58.484 49.071 -32.192 1.00156.41 ATOM 61 CA HIS F 455 -59.501 48.999 -31.145 1.00159.73 ATOM 62 C HIS F 455 -59.899 47.562 -30.834 1.00164.64 ATOM 63 O HIS F 455 -60.018 47.172 -29.663 1.00165.34 ATOM 64 CB HIS F 455 -60.732 49.801 -31.570 1.00163.85 ATOM 65 CG HIS F 455 -61.995 49.352 -30.909 1.00171.54 ATOM 66 ND1 HIS F 455 -62.733 48.279 -31.362 1.00165.15 ATOM 67 CD2 HIS F 455 -62.647 49.825 -29.820 1.00174.34 ATOM 68 CE1 HIS F 455 -63.784 48.111 -30.580 1.00162.00 ATOM 69 NE2 HIS F 455 -63.757 49.037 -29.639 1.00165.86 ATOM 70 N MET F 456 -60.159 46.774 -31.881 1.00163.34 ATOM 71 CA MET F 456 -60.586 45.396 -31.678 1.00167.00 ATOM 72 C MET F 456 -59.514 44.584 -30.968 1.00162.46 ATOM 73 O MET F 456 -59.827 43.756 -30.107 1.00160.31 ATOM 74 CB MET F 456 -60.956 44.755 -33.014 1.00165.91 ATOM 75 CG MET F 456 -62.313 45.177 -33.540 1.00164.84 ATOM 76 SD MET F 456 -63.633 44.876 -32.346 1.00161.38 ATOM 77 CE MET F 456 -63.381 43.138 -31.989 1.00149.01 ATOM 78 N ILE F 457 -58.246 44.794 -31.327 1.00156.11 ATOM 79 CA ILE F 457 -57.159 44.107 -30.633 1.00160.73 ATOM 80 C ILE F 457 -57.205 44.425 -29.144 1.00165.88 ATOM 81 O ILE F 457 -57.133 43.524 -28.292 1.00165.59 ATOM 82 CB ILE F 457 -55.796 44.479 -31.248 1.00153.82 ATOM 83 CG1 ILE F 457 -55.617 43.805 -32.608 1.00156.93 ATOM 84 CG2 ILE F 457 -54.667 44.082 -30.308 1.00159.29 ATOM 85 CD1 ILE F 457 -56.110 44.623 -33.773 1.00157.54 ATOM 86 N GLU F 458 -57.326 45.713 -28.807 1.00167.19 ATOM 87 CA GLU F 458 -57.395 46.092 -27.396 1.00167.19 ATOM 88 C GLU F 458 -58.550 45.381 -26.692 1.00162.28 ATOM 89 O GLU F 458 -58.377 44.792 -25.615 1.00164.61 ATOM 90 CB GLU F 458 -57.533 47.612 -27.260 1.00169.30 ATOM 91 CG GLU F 458 -56.837 48.427 -28.343 1.00171.13 ATOM 92 CD GLU F 458 -55.329 48.545 -28.161 1.00177.56 ATOM 93 OE1 GLU F 458 -54.682 47.564 -27.740 1.00178.91 ATOM 94 OE2 GLU F 458 -54.789 49.635 -28.446 1.00174.41 ATOM 95 N THR F 459 -59.741 45.425 -27.297 1.00160.72 ATOM 96 CA THR F 459 -60.926 44.849 -26.662 1.00164.93 ATOM 97 C THR F 459 -60.788 43.340 -26.465 1.00163.27 ATOM 98 O THR F 459 -61.143 42.807 -25.403 1.00159.45 ATOM 99 CB THR F 459 -62.166 45.175 -27.497 1.00163.76 ATOM 100 OG1 THR F 459 -62.281 46.597 -27.634 1.00162.52 ATOM 101 CG2 THR F 459 -63.420 44.639 -26.832 1.00164.83 ATOM 102 N ILE F 460 -60.276 42.636 -27.479 1.00163.57 ATOM 103 CA ILE F 460 -60.108 41.187 -27.385 1.00164.29 ATOM 104 C ILE F 460 -59.125 40.838 -26.275 1.00159.12 ATOM 105 O ILE F 460 -59.358 39.914 -25.481 1.00153.79 ATOM 106 CB ILE F 460 -59.653 40.610 -28.738 1.00153.52 ATOM 107 CG1 ILE F 460 -60.705 40.872 -29.816 1.00154.07 ATOM 108 CG2 ILE F 460 -59.385 39.119 -28.622 1.00150.86 ATOM 109 CD1 ILE F 460 -60.215 40.601 -31.221 1.00152.65 ATOM 110 N ASN F 461 -57.999 41.556 -26.215 1.00159.80 ATOM 111 CA ASN F 461 -57.029 41.286 -25.158 1.00165.13 ATOM 112 C ASN F 461 -57.628 41.536 -23.777 1.00164.52 ATOM 113 O ASN F 461 -57.335 40.803 -22.824 1.00164.33 ATOM 114 CB ASN F 461 -55.771 42.128 -25.368 1.00174.49 ATOM 115 CG ASN F 461 -55.043 41.774 -26.649 1.00177.06 ATOM 116 OD1 ASN F 461 -55.646 41.280 -27.603 1.00171.25 ATOM 117 ND2 ASN F 461 -53.740 42.020 -26.675 1.00182.86 ATOM 118 N LYS F 462 -58.494 42.546 -23.652 1.00156.90 ATOM 119 CA LYS F 462 -59.150 42.778 -22.367 1.00155.19 ATOM 120 C LYS F 462 -60.074 41.620 -21.997 1.00167.03 ATOM 121 O LYS F 462 -60.097 41.172 -20.843 1.00175.46 ATOM 122 CB LYS F 462 -59.926 44.092 -22.393 1.00158.49 ATOM 123 CG LYS F 462 -59.054 45.323 -22.305 1.00164.49 ATOM 124 CD LYS F 462 -59.815 46.465 -21.660 1.00166.12 ATOM 125 CE LYS F 462 -61.172 46.649 -22.311 1.00161.12 ATOM 126 NZ LYS F 462 -62.058 47.524 -21.500 1.00163.24 ATOM 127 N LEU F 463 -60.874 41.148 -22.959 1.00159.85 ATOM 128 CA LEU F 463 -61.731 39.993 -22.694 1.00160.63 ATOM 129 C LEU F 463 -60.905 38.798 -22.228 1.00161.63 ATOM 130 O LEU F 463 -61.273 38.108 -21.265 1.00156.12 ATOM 131 CB LEU F 463 -62.535 39.635 -23.944 1.00151.27 ATOM 132 CG LEU F 463 -63.543 40.671 -24.443 1.00152.24 ATOM 133 CD1 LEU F 463 -63.878 40.418 -25.899 1.00159.75 ATOM 134 CD2 LEU F 463 -64.808 40.651 -23.596 1.00147.13 ATOM 135 N ASN F 464 -59.774 38.552 -22.895 1.00165.02 ATOM 136 CA ASN F 464 -58.891 37.464 -22.484 1.00168.84 ATOM 137 C ASN F 464 -58.397 37.667 -21.058 1.00169.54 ATOM 138 O ASN F 464 -58.351 36.715 -20.269 1.00173.27 ATOM 139 CB ASN F 464 -57.702 37.344 -23.441 1.00166.16 ATOM 140 CG ASN F 464 -58.117 37.013 -24.863 1.00164.10 ATOM 141 OD1 ASN F 464 -57.280 36.975 -25.764 1.00163.25 ATOM 142 ND2 ASN F 464 -59.409 36.775 -25.074 1.00163.87 ATOM 143 N ARG F 465 -58.013 38.899 -20.712 1.00164.74 ATOM 144 CA ARG F 465 -57.548 39.180 -19.356 1.00167.05 ATOM 145 C ARG F 465 -58.621 38.857 -18.323 1.00169.37 ATOM 146 O ARG F 465 -58.340 38.235 -17.291 1.00172.08 ATOM 147 CB ARG F 465 -57.126 40.642 -19.236 1.00172.28 ATOM 148 CG ARG F 465 -56.745 41.058 -17.822 1.00177.01 ATOM 149 CD ARG F 465 -56.712 42.576 -17.675 1.00171.15 ATOM 150 NE ARG F 465 -56.550 43.264 -18.956 1.00171.26 ATOM 151 CZ ARG F 465 -55.394 43.392 -19.601 1.00176.79 ATOM 152 NH1 ARG F 465 -54.287 42.863 -19.097 1.00171.83 ATOM 153 NH2 ARG F 465 -55.347 44.036 -20.759 1.00175.46 ATOM 154 N ILE F 466 -59.853 39.308 -18.566 1.00166.89 ATOM 155 CA ILE F 466 -60.917 39.043 -17.599 1.00171.98 ATOM 156 C ILE F 466 -61.141 37.543 -17.459 1.00176.09 ATOM 157 O ILE F 466 -61.290 37.027 -16.344 1.00177.98 ATOM 158 CB ILE F 466 -62.213 39.786 -17.976 1.00169.46 ATOM 159 CG1 ILE F 466 -62.185 41.216 -17.429 1.00158.03 ATOM 160 CG2 ILE F 466 -63.417 39.077 -17.386 1.00171.57 ATOM 161 CD1 ILE F 466 -61.272 42.164 -18.165 1.00152.42 ATOM 162 N SER F 467 -61.150 36.814 -18.579 1.00174.08 ATOM 163 CA SER F 467 -61.296 35.363 -18.482 1.00176.07 ATOM 164 C SER F 467 -60.126 34.731 -17.730 1.00179.65 ATOM 165 O SER F 467 -60.292 33.693 -17.081 1.00176.61 ATOM 166 CB SER F 467 -61.435 34.741 -19.872 1.00176.31 ATOM 167 OG SER F 467 -61.843 33.385 -19.779 1.00181.89 ATOM 168 N ARG F 468 -58.945 35.350 -17.792 1.00178.03 ATOM 169 CA ARG F 468 -57.777 34.835 -17.079 1.00172.73 ATOM 170 C ARG F 468 -57.908 35.034 -15.574 1.00181.47 ATOM 171 O ARG F 468 -57.784 34.081 -14.797 1.00183.18 ATOM 172 CB ARG F 468 -56.507 35.510 -17.607 1.00175.24 ATOM 173 CG ARG F 468 -55.342 35.539 -16.624 1.00172.99 ATOM 174 CD ARG F 468 -54.662 36.902 -16.640 1.00179.04 ATOM 175 NE ARG F 468 -53.594 37.005 -15.651 1.00180.30 ATOM 176 CZ ARG F 468 -52.918 38.121 -15.397 1.00177.15 ATOM 177 NH1 ARG F 468 -53.201 39.236 -16.057 1.00167.71 ATOM 178 NH2 ARG F 468 -51.960 38.124 -14.479 1.00172.74 ATOM 179 N GLN F 469 -58.147 36.272 -15.141 1.00182.17 ATOM 180 CA GLN F 469 -58.181 36.582 -13.714 1.00184.69 ATOM 181 C GLN F 469 -59.388 35.977 -13.006 1.00183.48 ATOM 182 O GLN F 469 -59.505 36.111 -11.782 1.00178.61 ATOM 183 CB GLN F 469 -58.157 38.096 -13.504 1.00180.16 ATOM 184 CG GLN F 469 -56.886 38.760 -14.011 1.00175.71 ATOM 185 CD GLN F 469 -56.977 40.272 -14.012 1.00174.98 ATOM 186 OE1 GLN F 469 -58.071 40.837 -14.041 1.00174.97 ATOM 187 NE2 GLN F 469 -55.826 40.936 -13.982 1.00176.06 ATOM 188 N MET F 470 -60.280 35.314 -13.741 1.00179.61 ATOM 189 CA MET F 470 -61.433 34.645 -13.160 1.00175.01 ATOM 190 C MET F 470 -61.304 33.128 -13.151 1.00179.01 ATOM 191 O MET F 470 -62.219 32.449 -12.673 1.00177.25 ATOM 192 CB MET F 470 -62.709 35.045 -13.905 1.00172.82 ATOM 193 CG MET F 470 -63.107 36.499 -13.725 1.00172.72 ATOM 194 SD MET F 470 -64.809 36.792 -14.233 1.00180.19 ATOM 195 CE MET F 470 -65.658 35.613 -13.187 1.00188.20 ATOM 196 N LEU F 471 -60.204 32.578 -13.673 1.00180.01 ATOM 197 CA LEU F 471 -60.006 31.132 -13.620 1.00178.23 ATOM 198 C LEU F 471 -59.964 30.638 -12.181 1.00180.68 ATOM 199 O LEU F 471 -60.535 29.592 -11.856 1.00177.78 ATOM 200 CB LEU F 471 -58.718 30.746 -14.346 1.00180.06 ATOM 201 CG LEU F 471 -58.559 31.154 -15.810 1.00184.62 ATOM 202 CD1 LEU F 471 -57.168 30.796 -16.315 1.00181.36 ATOM 203 CD2 LEU F 471 -59.628 30.515 -16.681 1.00183.98 ATOM 204 N GLN F 472 -59.291 31.382 -11.303 1.00180.75 ATOM 205 CA GLN F 472 -59.186 30.981 -9.907 1.00181.23 ATOM 206 C GLN F 472 -60.470 31.249 -9.130 1.00179.56 ATOM 207 O GLN F 472 -60.655 30.681 -8.048 1.00177.56 ATOM 208 CB GLN F 472 -58.008 31.699 -9.243 1.00174.79 ATOM 209 CG GLN F 472 -57.198 32.589 -10.186 1.00170.70 ATOM 210 CD GLN F 472 -56.379 31.801 -11.195 1.00167.87 ATOM 211 OE1 GLN F 472 -55.907 30.703 -10.905 1.00164.47 ATOM 212 NE2 GLN F 472 -56.222 32.354 -12.393 1.00166.90 ATOM 213 N GLU F 473 -61.357 32.100 -9.653 1.00180.35 ATOM 214 CA GLU F 473 -62.593 32.425 -8.948 1.00179.44 ATOM 215 C GLU F 473 -63.675 31.379 -9.199 1.00182.42 ATOM 216 O GLU F 473 -64.116 30.690 -8.273 1.00182.60 ATOM 217 CB GLU F 473 -63.086 33.811 -9.370 1.00181.91 ATOM 218 CG GLU F 473 -62.109 34.935 -9.076 1.00183.05 ATOM 219 CD GLU F 473 -62.664 36.290 -9.454 1.00194.30 ATOM 220 OE1 GLU F 473 -63.295 36.396 -10.526 1.00185.62 ATOM 221 OE2 GLU F 473 -62.484 37.247 -8.672 1.00198.00 ATOM 222 N MET F 474 -64.109 31.243 -10.455 1.00181.93 ATOM 223 CA MET F 474 -65.126 30.253 -10.797 1.00186.21 ATOM 224 C MET F 474 -64.630 28.828 -10.608 1.00180.48 ATOM 225 O MET F 474 -65.446 27.902 -10.544 1.00170.07 ATOM 226 CB MET F 474 -65.588 30.447 -12.241 1.00184.40 ATOM 227 CG MET F 474 -66.561 31.595 -12.446 1.00184.06 ATOM 228 SD MET F 474 -68.284 31.063 -12.391 1.00182.71 ATOM 229 CE MET F 474 -68.374 30.062 -13.875 1.00173.08 ATOM 230 N GLY F 475 -63.318 28.637 -10.524 1.00182.34 ATOM 231 CA GLY F 475 -62.723 27.330 -10.346 1.00178.66 ATOM 232 C GLY F 475 -62.132 26.791 -11.630 1.00175.82 ATOM 233 O GLY F 475 -61.012 26.270 -11.630 1.00159.72 ATOM 234 N ARG F 476 -62.865 26.906 -12.737 1.00182.97 ATOM 235 CA ARG F 476 -62.323 26.515 -14.034 1.00185.07 ATOM 236 C ARG F 476 -62.275 27.671 -15.024 1.00186.56 ATOM 237 O ARG F 476 -61.195 28.004 -15.525 1.00186.79 ATOM 238 CB ARG F 476 -63.133 25.348 -14.609 1.00183.67 ATOM 239 CG ARG F 476 -62.305 24.403 -15.460 1.00180.50 ATOM 240 CD ARG F 476 -63.162 23.312 -16.066 1.00180.23 ATOM 241 NE ARG F 476 -63.749 23.729 -17.333 1.00185.82 ATOM 242 CZ ARG F 476 -64.352 22.901 -18.177 1.00181.37 ATOM 243 NH1 ARG F 476 -64.444 21.611 -17.885 1.00174.86 ATOM 244 NH2 ARG F 476 -64.857 23.358 -19.314 1.00176.62 ATOM 245 N GLU F 477 -63.416 28.302 -15.315 1.00185.95 ATOM 246 CA GLU F 477 -63.502 29.333 -16.343 1.00186.43 ATOM 247 C GLU F 477 -64.851 30.044 -16.271 1.00184.92 ATOM 248 O GLU F 477 -65.852 29.437 -15.866 1.00181.82 ATOM 249 CB GLU F 477 -63.296 28.728 -17.737 1.00191.17 ATOM 250 CG GLU F 477 -64.404 27.797 -18.207 1.00194.45 ATOM 251 CD GLU F 477 -64.113 27.199 -19.568 1.00198.46 ATOM 252 OE1 GLU F 477 -62.968 26.752 -19.790 1.00201.72 ATOM 253 OE2 GLU F 477 -65.024 27.189 -20.422 1.00198.90 ATOM 254 N PRO F 478 -64.919 31.317 -16.661 1.00186.43 ATOM 255 CA PRO F 478 -66.175 32.070 -16.539 1.00182.99 ATOM 256 C PRO F 478 -67.219 31.624 -17.557 1.00187.11 ATOM 257 O PRO F 478 -66.940 30.905 -18.518 1.00188.71 ATOM 258 CB PRO F 478 -65.742 33.520 -16.786 1.00179.38 ATOM 259 CG PRO F 478 -64.523 33.410 -17.627 1.00178.69 ATOM 260 CD PRO F 478 -63.815 32.164 -17.150 1.00178.25 ATOM 261 N THR F 479 -68.450 32.079 -17.324 1.00188.46 ATOM 262 CA THR F 479 -69.577 31.780 -18.194 1.00195.27 ATOM 263 C THR F 479 -69.558 32.707 -19.411 1.00193.98 ATOM 264 O THR F 479 -68.942 33.776 -19.376 1.00178.63 ATOM 265 CB THR F 479 -70.886 31.914 -17.405 1.00193.35 ATOM 266 OG1 THR F 479 -71.663 30.718 -17.554 1.00193.97 ATOM 267 CG2 THR F 479 -71.715 33.108 -17.872 1.00191.01 TER