HEADER LIGASE 31-DEC-69 6N67 TITLE Crystal structure of the ligase domain of fungal tRNA ligase Trl1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: tRNA ligase; COMPND 3 CHAIN: A; COMPND 4 EC: 6.5.1.3; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.90 ANGSTORMS DBREF 6N67 A 2 414 UNP G0S6G2 G0S6G2_CHAT 2 414 MODRES 6N67 MSE A 352 MET modified residue MODRES 6N67 MSE A 418 MET modified residue SEQRES 1 A 23 ILE ILE LYS LEU ARG ASN ASP PHE LEU GLU TYR LYS ASN SEQRES 2 A 23 MET LYS GLY THR ASP ALA ALA ASN LEU GLU ATOM 1 N ILE A 385 26.734 6.218 43.478 1.00 31.55 ATOM 2 CA ILE A 385 27.252 4.850 43.218 1.00 34.30 ATOM 3 C ILE A 385 28.736 4.800 43.582 1.00 32.11 ATOM 4 O ILE A 385 29.181 3.861 44.279 1.00 30.72 ATOM 5 CB ILE A 385 26.978 4.479 41.752 1.00 38.30 ATOM 6 CG1 ILE A 385 25.467 4.478 41.496 1.00 43.52 ATOM 7 CG2 ILE A 385 27.652 3.165 41.397 1.00 38.14 ATOM 8 CD1 ILE A 385 25.070 4.150 40.074 1.00 46.66 ATOM 9 N ILE A 386 29.478 5.806 43.158 1.00 31.70 ATOM 10 CA ILE A 386 30.944 5.885 43.400 1.00 35.08 ATOM 11 C ILE A 386 31.165 6.170 44.897 1.00 33.86 ATOM 12 O ILE A 386 32.072 5.571 45.489 1.00 34.83 ATOM 13 CB ILE A 386 31.573 6.951 42.490 1.00 34.89 ATOM 14 CG1 ILE A 386 31.433 6.576 41.014 1.00 37.65 ATOM 15 CG2 ILE A 386 33.021 7.200 42.886 1.00 36.95 ATOM 16 CD1 ILE A 386 31.873 7.677 40.072 1.00 39.26 ATOM 17 N LYS A 387 30.382 7.076 45.475 1.00 33.77 ATOM 18 CA LYS A 387 30.459 7.421 46.912 1.00 38.93 ATOM 19 C LYS A 387 30.182 6.171 47.754 1.00 40.18 ATOM 20 O LYS A 387 30.978 5.902 48.671 1.00 40.49 ATOM 21 CB LYS A 387 29.434 8.485 47.304 1.00 45.53 ATOM 22 CG LYS A 387 29.589 9.004 48.731 1.00 51.63 ATOM 23 CD LYS A 387 30.687 10.051 48.851 1.00 65.91 ATOM 24 CE LYS A 387 31.253 10.221 50.248 1.00 76.47 ATOM 25 NZ LYS A 387 30.193 10.178 51.282 1.00 77.31 ATOM 26 N LEU A 388 29.109 5.428 47.459 1.00 36.25 ATOM 27 CA LEU A 388 28.800 4.207 48.241 1.00 37.87 ATOM 28 C LEU A 388 29.996 3.251 48.167 1.00 34.98 ATOM 29 O LEU A 388 30.390 2.701 49.221 1.00 35.26 ATOM 30 CB LEU A 388 27.496 3.565 47.753 1.00 38.98 ATOM 31 CG LEU A 388 27.015 2.345 48.545 1.00 39.89 ATOM 32 CD1 LEU A 388 26.933 2.603 50.036 1.00 38.01 ATOM 33 CD2 LEU A 388 25.666 1.882 48.023 1.00 40.65 ATOM 34 N ARG A 389 30.557 3.027 46.982 1.00 34.48 ATOM 35 CA ARG A 389 31.723 2.110 46.794 1.00 34.47 ATOM 36 C ARG A 389 32.908 2.589 47.653 1.00 40.24 ATOM 37 O ARG A 389 33.534 1.753 48.365 1.00 40.91 ATOM 38 CB ARG A 389 32.111 2.037 45.315 1.00 37.89 ATOM 39 CG ARG A 389 33.499 1.477 45.010 1.00 41.47 ATOM 40 CD ARG A 389 34.057 2.120 43.742 1.00 47.55 ATOM 41 NE ARG A 389 33.020 2.135 42.716 1.00 58.49 ATOM 42 CZ ARG A 389 33.040 2.855 41.600 1.00 58.12 ATOM 43 NH1 ARG A 389 34.075 3.633 41.310 1.00 59.58 ATOM 44 NH2 ARG A 389 32.003 2.788 40.786 1.00 49.45 ATOM 45 N ASN A 390 33.204 3.884 47.607 1.00 37.53 ATOM 46 CA ASN A 390 34.377 4.461 48.311 1.00 44.19 ATOM 47 C ASN A 390 34.110 4.448 49.823 1.00 40.18 ATOM 48 O ASN A 390 35.076 4.209 50.553 1.00 41.37 ATOM 49 CB ASN A 390 34.756 5.853 47.802 1.00 38.29 ATOM 50 CG ASN A 390 35.335 5.855 46.406 1.00 40.18 ATOM 51 OD1 ASN A 390 35.952 4.885 45.982 1.00 44.57 ATOM 52 ND2 ASN A 390 35.118 6.937 45.669 1.00 43.99 ATOM 53 N ASP A 391 32.859 4.655 50.256 1.00 37.29 ATOM 54 CA ASP A 391 32.443 4.626 51.688 1.00 40.02 ATOM 55 C ASP A 391 32.665 3.219 52.269 1.00 39.01 ATOM 56 O ASP A 391 33.119 3.114 53.415 1.00 40.73 ATOM 57 CB ASP A 391 30.985 5.057 51.872 1.00 37.27 ATOM 58 CG ASP A 391 30.750 6.557 51.772 1.00 41.91 ATOM 59 OD1 ASP A 391 31.746 7.309 51.741 1.00 42.07 ATOM 60 OD2 ASP A 391 29.561 6.962 51.725 1.00 40.55 ATOM 61 N PHE A 392 32.374 2.171 51.506 1.00 36.56 ATOM 62 CA PHE A 392 32.608 0.774 51.932 1.00 36.30 ATOM 63 C PHE A 392 34.114 0.507 52.010 1.00 43.28 ATOM 64 O PHE A 392 34.582 -0.175 52.937 1.00 39.79 ATOM 65 CB PHE A 392 31.960 -0.217 50.968 1.00 36.37 ATOM 66 CG PHE A 392 32.273 -1.654 51.296 1.00 36.27 ATOM 67 CD1 PHE A 392 31.815 -2.231 52.478 1.00 39.41 ATOM 68 CD2 PHE A 392 33.069 -2.416 50.465 1.00 35.03 ATOM 69 CE1 PHE A 392 32.116 -3.548 52.794 1.00 34.15 ATOM 70 CE2 PHE A 392 33.334 -3.748 50.763 1.00 37.50 ATOM 71 CZ PHE A 392 32.862 -4.311 51.930 1.00 35.53 ATOM 72 N LEU A 393 34.865 0.959 51.012 1.00 37.92 ATOM 73 CA LEU A 393 36.325 0.712 50.982 1.00 42.55 ATOM 74 C LEU A 393 36.976 1.423 52.167 1.00 39.22 ATOM 75 O LEU A 393 37.834 0.794 52.780 1.00 44.24 ATOM 76 CB LEU A 393 36.902 1.162 49.641 1.00 44.98 ATOM 77 CG LEU A 393 36.550 0.250 48.472 1.00 42.34 ATOM 78 CD1 LEU A 393 36.983 0.891 47.164 1.00 44.23 ATOM 79 CD2 LEU A 393 37.174 -1.133 48.638 1.00 39.29 ATOM 80 N GLU A 394 36.546 2.643 52.498 1.00 42.46 ATOM 81 CA GLU A 394 37.040 3.396 53.685 1.00 50.01 ATOM 82 C GLU A 394 36.694 2.612 54.951 1.00 48.09 ATOM 83 O GLU A 394 37.591 2.399 55.779 1.00 45.43 ATOM 84 CB GLU A 394 36.416 4.788 53.791 1.00 59.03 ATOM 85 CG GLU A 394 37.032 5.795 52.835 1.00 80.24 ATOM 86 CD GLU A 394 36.583 7.235 53.045 1.00 88.73 ATOM 87 OE1 GLU A 394 36.464 7.645 54.219 1.00 87.59 ATOM 88 OE2 GLU A 394 36.343 7.938 52.034 1.00 85.66 ATOM 89 N TYR A 395 35.432 2.204 55.078 1.00 47.07 ATOM 90 CA TYR A 395 34.935 1.322 56.158 1.00 47.52 ATOM 91 C TYR A 395 35.878 0.124 56.321 1.00 46.71 ATOM 92 O TYR A 395 36.201 -0.209 57.462 1.00 49.55 ATOM 93 CB TYR A 395 33.494 0.885 55.903 1.00 47.75 ATOM 94 CG TYR A 395 33.043 -0.207 56.836 1.00 50.24 ATOM 95 CD1 TYR A 395 32.853 0.045 58.189 1.00 55.70 ATOM 96 CD2 TYR A 395 32.838 -1.498 56.381 1.00 51.46 ATOM 97 CE1 TYR A 395 32.457 -0.958 59.063 1.00 57.97 ATOM 98 CE2 TYR A 395 32.449 -2.514 57.241 1.00 56.05 ATOM 99 CZ TYR A 395 32.253 -2.241 58.585 1.00 63.25 ATOM 100 OH TYR A 395 31.870 -3.234 59.434 1.00 68.34 ATOM 101 N LYS A 396 36.322 -0.487 55.228 1.00 40.21 ATOM 102 CA LYS A 396 37.198 -1.685 55.256 1.00 44.55 ATOM 103 C LYS A 396 38.668 -1.271 55.366 1.00 47.56 ATOM 104 O LYS A 396 39.522 -2.176 55.450 1.00 48.21 ATOM 105 CB LYS A 396 36.971 -2.546 54.011 1.00 43.50 ATOM 106 CG LYS A 396 35.596 -3.198 53.945 1.00 48.75 ATOM 107 CD LYS A 396 35.365 -4.246 55.021 1.00 51.00 ATOM 108 CE LYS A 396 36.354 -5.386 54.931 1.00 52.86 ATOM 109 NZ LYS A 396 36.104 -6.395 55.978 1.00 57.06 ATOM 110 N ASN A 397 38.967 0.025 55.303 1.00 48.84 ATOM 111 CA ASN A 397 40.367 0.506 55.359 1.00 56.01 ATOM 112 C ASN A 397 41.159 -0.205 54.259 1.00 58.00 ATOM 113 O ASN A 397 42.225 -0.754 54.522 1.00 56.24 ATOM 114 CB ASN A 397 40.904 0.282 56.780 1.00 63.78 ATOM 115 CG ASN A 397 42.288 0.841 57.012 1.00 74.07 ATOM 116 OD1 ASN A 397 42.698 1.801 56.359 1.00 86.46 ATOM 117 ND2 ASN A 397 43.008 0.245 57.949 1.00 80.09 ATOM 118 N MSE A 398 40.609 -0.211 53.031 1.00 56.14 ATOM 119 CA MSE A 398 41.201 -0.903 51.893 1.00 51.89 ATOM 120 C MSE A 398 41.148 -0.033 50.642 1.00 53.74 ATOM 121 O MSE A 398 40.275 0.819 50.511 1.00 51.36 ATOM 122 CB MSE A 398 40.415 -2.159 51.513 1.00 55.83 ATOM 123 CG MSE A 398 40.404 -3.245 52.534 1.00 64.17 ATOM 124 SE MSE A 398 39.635 -4.834 51.683 1.00 62.00 ATOM 125 CE MSE A 398 41.253 -5.890 51.374 1.00 72.81 ATOM 126 N LYS A 399 42.070 -0.300 49.710 1.00 53.73 ATOM 127 CA LYS A 399 41.977 0.218 48.354 1.00 59.62 ATOM 128 C LYS A 399 41.218 -0.800 47.501 1.00 54.40 ATOM 129 O LYS A 399 41.296 -2.010 47.818 1.00 50.53 ATOM 130 CB LYS A 399 43.367 0.465 47.754 1.00 65.34 ATOM 131 CG LYS A 399 44.199 1.529 48.459 1.00 71.18 ATOM 132 CD LYS A 399 45.401 2.004 47.664 1.00 82.80 ATOM 133 CE LYS A 399 46.270 0.887 47.120 1.00 85.62 ATOM 134 NZ LYS A 399 46.844 0.059 48.207 1.00 88.04 ATOM 135 N GLY A 400 40.539 -0.336 46.448 1.00 47.21 ATOM 136 CA GLY A 400 39.764 -1.197 45.538 1.00 44.68 ATOM 137 C GLY A 400 40.598 -2.369 45.059 1.00 46.65 ATOM 138 O GLY A 400 40.090 -3.521 44.994 1.00 42.34 ATOM 139 N THR A 401 41.849 -2.079 44.729 1.00 46.37 ATOM 140 CA THR A 401 42.811 -3.049 44.164 1.00 52.27 ATOM 141 C THR A 401 43.049 -4.164 45.200 1.00 49.90 ATOM 142 O THR A 401 43.021 -5.344 44.814 1.00 57.76 ATOM 143 CB THR A 401 44.042 -2.281 43.661 1.00 54.20 ATOM 144 OG1 THR A 401 44.705 -3.145 42.743 1.00 73.20 ATOM 145 CG2 THR A 401 44.973 -1.845 44.770 1.00 54.78 ATOM 146 N ASP A 402 43.231 -3.814 46.474 1.00 53.84 ATOM 147 CA ASP A 402 43.372 -4.787 47.592 1.00 57.96 ATOM 148 C ASP A 402 42.091 -5.633 47.690 1.00 58.82 ATOM 149 O ASP A 402 42.197 -6.869 47.662 1.00 58.79 ATOM 150 CB ASP A 402 43.635 -4.074 48.920 1.00 60.08 ATOM 151 CG ASP A 402 44.920 -3.261 48.974 1.00 70.23 ATOM 152 OD1 ASP A 402 45.879 -3.607 48.227 1.00 64.96 ATOM 153 OD2 ASP A 402 44.948 -2.286 49.770 1.00 66.37 ATOM 154 N ALA A 403 40.919 -4.988 47.761 1.00 49.97 ATOM 155 CA ALA A 403 39.592 -5.651 47.793 1.00 45.41 ATOM 156 C ALA A 403 39.465 -6.660 46.646 1.00 44.59 ATOM 157 O ALA A 403 38.919 -7.773 46.872 1.00 46.75 ATOM 158 CB ALA A 403 38.497 -4.616 47.741 1.00 44.42 ATOM 159 N ALA A 404 39.943 -6.319 45.446 1.00 45.10 ATOM 160 CA ALA A 404 39.803 -7.193 44.258 1.00 46.72 ATOM 161 C ALA A 404 40.804 -8.351 44.322 1.00 44.42 ATOM 162 O ALA A 404 40.563 -9.373 43.655 1.00 46.10 ATOM 163 CB ALA A 404 39.962 -6.391 42.993 1.00 51.88 ATOM 164 N ASN A 405 41.876 -8.206 45.101 1.00 54.91 ATOM 165 CA ASN A 405 42.959 -9.219 45.229 1.00 58.09 ATOM 166 C ASN A 405 42.599 -10.304 46.249 1.00 57.65 ATOM 167 O ASN A 405 43.194 -11.383 46.156 1.00 59.07 ATOM 168 CB ASN A 405 44.290 -8.571 45.618 1.00 64.65 ATOM 169 CG ASN A 405 44.987 -7.931 44.437 1.00 67.06 ATOM 170 OD1 ASN A 405 44.713 -8.284 43.289 1.00 63.40 ATOM 171 ND2 ASN A 405 45.894 -7.004 44.712 1.00 66.63 ATOM 172 N LEU A 406 41.689 -10.035 47.191 1.00 59.46 ATOM 173 CA LEU A 406 41.284 -11.002 48.253 1.00 60.35 ATOM 174 C LEU A 406 40.920 -12.357 47.635 1.00 64.73 ATOM 175 O LEU A 406 41.385 -13.379 48.162 1.00 58.85 ATOM 176 CB LEU A 406 40.084 -10.453 49.025 1.00 57.25 ATOM 177 CG LEU A 406 40.349 -9.219 49.879 1.00 60.24 ATOM 178 CD1 LEU A 406 39.074 -8.789 50.584 1.00 59.43 ATOM 179 CD2 LEU A 406 41.463 -9.477 50.886 1.00 61.54 ATOM 180 N GLU A 407 40.096 -12.368 46.579 1.00 70.31 ATOM 181 CA GLU A 407 39.614 -13.619 45.928 1.00 80.33 ATOM 182 C GLU A 407 40.735 -14.209 45.060 1.00 86.07 ATOM 183 O GLU A 407 41.642 -14.882 45.544 1.00 84.36 ATOM 184 CB GLU A 407 38.365 -13.360 45.086 1.00 80.75 ATOM 185 CG GLU A 407 37.549 -14.616 44.836 1.00 82.41 ATOM 186 CD GLU A 407 36.281 -14.779 45.665 1.00 79.79 ATOM 187 OE1 GLU A 407 36.330 -14.731 46.939 1.00 73.90 ATOM 188 OE2 GLU A 407 35.233 -14.958 45.027 1.00 67.01 ATOM 189 C1 GOL A 510 24.835 12.536 45.645 1.00 70.52 ATOM 190 O1 GOL A 510 23.640 11.853 45.272 1.00 62.32 ATOM 191 C2 GOL A 510 25.828 12.566 44.501 1.00 71.12 ATOM 192 O2 GOL A 510 25.521 13.654 43.628 1.00 54.40 ATOM 193 C3 GOL A 510 27.267 12.657 44.967 1.00 75.47 ATOM 194 O3 GOL A 510 27.768 11.395 45.408 1.00 72.73 TER