HEADER HYDROLASE,TRANSFERASE/DNA 31-DEC-69 6N9W TITLE Structure of bacteriophage T7 lagging-strand DNA polymerase (D5A/E7A) TITLE 2 and gp4 (helicase/primase) bound to DNA including RNA/DNA hybrid, and TITLE 3 an incoming dTTP (LagS2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA primase/helicase; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 MUTATION: YES; COMPND 5 EC: 2.7.7.-,3.6.4.12; COMPND 6 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 6N9W A 1 566 UNP P03692 PRIM_BPT7 1 566 SEQRES 1 A 35 VAL PHE LEU TYR HIS ILE PRO CYS ASP ASN CYS GLY SER SEQRES 2 A 35 SER ASP GLY ASN SER LEU PHE SER ASP GLY HIS THR PHE SEQRES 3 A 35 CYS TYR VAL CYS GLU LYS TRP THR ALA ATOM 1 N VAL A 10 166.172 167.951 133.481 1.00118.15 ATOM 2 CA VAL A 10 167.448 167.946 132.778 1.00118.15 ATOM 3 C VAL A 10 167.177 167.814 131.271 1.00118.15 ATOM 4 O VAL A 10 166.181 167.216 130.858 1.00118.15 ATOM 5 CB VAL A 10 168.380 166.825 133.336 1.00118.15 ATOM 6 CG1 VAL A 10 167.844 165.436 133.021 1.00118.15 ATOM 7 CG2 VAL A 10 169.823 166.993 132.864 1.00118.15 ATOM 8 N PHE A 11 168.039 168.425 130.459 1.00129.68 ATOM 9 CA PHE A 11 167.864 168.426 129.013 1.00129.68 ATOM 10 C PHE A 11 168.124 167.047 128.419 1.00129.68 ATOM 11 O PHE A 11 169.064 166.351 128.811 1.00129.68 ATOM 12 CB PHE A 11 168.802 169.453 128.378 1.00129.68 ATOM 13 CG PHE A 11 168.788 169.445 126.878 1.00129.68 ATOM 14 CD1 PHE A 11 167.709 169.957 126.178 1.00129.68 ATOM 15 CD2 PHE A 11 169.865 168.936 126.168 1.00129.68 ATOM 16 CE1 PHE A 11 167.699 169.951 124.794 1.00129.68 ATOM 17 CE2 PHE A 11 169.862 168.927 124.787 1.00129.68 ATOM 18 CZ PHE A 11 168.778 169.437 124.100 1.00129.68 ATOM 19 N LEU A 12 167.279 166.654 127.463 1.00133.54 ATOM 20 CA LEU A 12 167.465 165.394 126.752 1.00133.54 ATOM 21 C LEU A 12 167.762 165.600 125.273 1.00133.54 ATOM 22 O LEU A 12 168.849 165.224 124.819 1.00133.54 ATOM 23 CB LEU A 12 166.226 164.510 126.932 1.00133.54 ATOM 24 CG LEU A 12 165.968 164.022 128.355 1.00133.54 ATOM 25 CD1 LEU A 12 164.644 163.286 128.430 1.00133.54 ATOM 26 CD2 LEU A 12 167.106 163.131 128.820 1.00133.54 ATOM 27 N TYR A 13 166.860 166.228 124.520 1.00133.81 ATOM 28 CA TYR A 13 167.007 166.416 123.075 1.00133.81 ATOM 29 C TYR A 13 165.986 167.454 122.613 1.00133.81 ATOM 30 O TYR A 13 165.306 168.095 123.427 1.00133.81 ATOM 31 CB TYR A 13 166.866 165.094 122.309 1.00133.81 ATOM 32 CG TYR A 13 165.549 164.373 122.492 1.00133.81 ATOM 33 CD1 TYR A 13 165.368 163.475 123.537 1.00133.81 ATOM 34 CD2 TYR A 13 164.499 164.561 121.600 1.00133.81 ATOM 35 CE1 TYR A 13 164.171 162.804 123.706 1.00133.81 ATOM 36 CE2 TYR A 13 163.298 163.893 121.760 1.00133.81 ATOM 37 CZ TYR A 13 163.141 163.018 122.814 1.00133.81 ATOM 38 OH TYR A 13 161.949 162.351 122.976 1.00133.81 ATOM 39 N HIS A 14 165.881 167.612 121.295 1.00133.76 ATOM 40 CA HIS A 14 165.028 168.606 120.665 1.00133.76 ATOM 41 C HIS A 14 163.889 167.933 119.908 1.00133.76 ATOM 42 O HIS A 14 164.052 166.854 119.333 1.00133.76 ATOM 43 CB HIS A 14 165.828 169.481 119.696 1.00133.76 ATOM 44 CG HIS A 14 166.909 170.283 120.351 1.00133.76 ATOM 45 ND1 HIS A 14 166.651 171.414 121.094 1.00133.76 ATOM 46 CD2 HIS A 14 168.252 170.119 120.370 1.00133.76 ATOM 47 CE1 HIS A 14 167.790 171.912 121.543 1.00133.76 ATOM 48 NE2 HIS A 14 168.776 171.144 121.119 1.00133.76 ATOM 49 N ILE A 15 162.734 168.590 119.915 1.00148.64 ATOM 50 CA ILE A 15 161.552 168.157 119.174 1.00148.64 ATOM 51 C ILE A 15 161.106 169.319 118.292 1.00148.64 ATOM 52 O ILE A 15 161.426 170.476 118.603 1.00148.64 ATOM 53 CB ILE A 15 160.432 167.700 120.128 1.00148.64 ATOM 54 CG1 ILE A 15 160.049 168.823 121.093 1.00148.64 ATOM 55 CG2 ILE A 15 160.837 166.445 120.883 1.00148.64 ATOM 56 CD1 ILE A 15 158.816 168.521 121.909 1.00148.64 ATOM 57 N PRO A 16 160.411 169.078 117.178 1.00159.96 ATOM 58 CA PRO A 16 159.878 170.204 116.397 1.00159.96 ATOM 59 C PRO A 16 158.713 170.870 117.116 1.00159.96 ATOM 60 O PRO A 16 157.806 170.201 117.615 1.00159.96 ATOM 61 CB PRO A 16 159.439 169.551 115.081 1.00159.96 ATOM 62 CG PRO A 16 159.212 168.124 115.422 1.00159.96 ATOM 63 CD PRO A 16 160.223 167.793 116.479 1.00159.96 ATOM 64 N CYS A 17 158.754 172.197 117.171 1.00181.79 ATOM 65 CA CYS A 17 157.751 172.964 117.890 1.00181.79 ATOM 66 C CYS A 17 156.447 173.027 117.100 1.00181.79 ATOM 67 O CYS A 17 156.391 172.710 115.909 1.00181.79 ATOM 68 CB CYS A 17 158.259 174.378 118.174 1.00181.79 ATOM 69 SG CYS A 17 157.127 175.398 119.144 1.00181.79 ATOM 70 N ASP A 18 155.385 173.444 117.788 1.00190.69 ATOM 71 CA ASP A 18 154.072 173.594 117.177 1.00190.69 ATOM 72 C ASP A 18 153.595 175.034 117.090 1.00190.69 ATOM 73 O ASP A 18 152.901 175.383 116.133 1.00190.69 ATOM 74 CB ASP A 18 153.030 172.760 117.939 1.00190.69 ATOM 75 CG ASP A 18 152.970 173.093 119.426 1.00190.69 ATOM 76 OD1 ASP A 18 153.802 173.887 119.916 1.00190.69 ATOM 77 OD2 ASP A 18 152.077 172.551 120.110 1.00190.69 ATOM 78 N ASN A 19 153.947 175.873 118.065 1.00185.33 ATOM 79 CA ASN A 19 153.545 177.275 118.027 1.00185.33 ATOM 80 C ASN A 19 154.351 178.035 116.981 1.00185.33 ATOM 81 O ASN A 19 153.790 178.611 116.042 1.00185.33 ATOM 82 CB ASN A 19 153.719 177.898 119.415 1.00185.33 ATOM 83 CG ASN A 19 153.013 179.237 119.557 1.00185.33 ATOM 84 OD1 ASN A 19 152.368 179.724 118.627 1.00185.33 ATOM 85 ND2 ASN A 19 153.134 179.839 120.734 1.00185.33 ATOM 86 N CYS A 20 155.676 178.043 117.126 1.00181.96 ATOM 87 CA CYS A 20 156.522 178.709 116.144 1.00181.96 ATOM 88 C CYS A 20 156.694 177.875 114.881 1.00181.96 ATOM 89 O CYS A 20 157.035 178.420 113.826 1.00181.96 ATOM 90 CB CYS A 20 157.886 179.030 116.756 1.00181.96 ATOM 91 SG CYS A 20 158.856 177.584 117.233 1.00181.96 ATOM 92 N GLY A 21 156.466 176.566 114.965 1.00177.94 ATOM 93 CA GLY A 21 156.584 175.712 113.802 1.00177.94 ATOM 94 C GLY A 21 157.999 175.405 113.375 1.00177.94 ATOM 95 O GLY A 21 158.210 174.968 112.240 1.00177.94 ATOM 96 N SER A 22 158.979 175.620 114.248 1.00178.26 ATOM 97 CA SER A 22 160.369 175.377 113.904 1.00178.26 ATOM 98 C SER A 22 160.699 173.889 114.008 1.00178.26 ATOM 99 O SER A 22 159.883 173.066 114.430 1.00178.26 ATOM 100 CB SER A 22 161.292 176.191 114.807 1.00178.26 ATOM 101 OG SER A 22 161.194 175.759 116.152 1.00178.26 ATOM 102 N SER A 23 161.926 173.551 113.617 1.00169.43 ATOM 103 CA SER A 23 162.395 172.171 113.605 1.00169.43 ATOM 104 C SER A 23 163.199 171.801 114.844 1.00169.43 ATOM 105 O SER A 23 163.015 170.709 115.389 1.00169.43 ATOM 106 CB SER A 23 163.246 171.915 112.357 1.00169.43 ATOM 107 OG SER A 23 162.475 172.059 111.178 1.00169.43 ATOM 108 N ASP A 24 164.088 172.679 115.300 1.00170.76 ATOM 109 CA ASP A 24 164.950 172.407 116.444 1.00170.76 ATOM 110 C ASP A 24 164.840 173.518 117.477 1.00170.76 ATOM 111 O ASP A 24 165.813 173.864 118.152 1.00170.76 ATOM 112 CB ASP A 24 166.401 172.229 116.003 1.00170.76 ATOM 113 CG ASP A 24 166.614 170.965 115.194 1.00170.76 ATOM 114 OD1 ASP A 24 165.876 169.983 115.417 1.00170.76 ATOM 115 OD2 ASP A 24 167.518 170.955 114.334 1.00170.76 ATOM 116 N GLY A 25 163.650 174.093 117.619 1.00161.99 ATOM 117 CA GLY A 25 163.454 175.176 118.561 1.00161.99 ATOM 118 C GLY A 25 162.948 174.711 119.909 1.00161.99 ATOM 119 O GLY A 25 163.289 175.291 120.944 1.00161.99 ATOM 120 N ASN A 26 162.133 173.662 119.909 1.00156.49 ATOM 121 CA ASN A 26 161.557 173.132 121.135 1.00156.49 ATOM 122 C ASN A 26 162.469 172.051 121.702 1.00156.49 ATOM 123 O ASN A 26 163.038 171.249 120.960 1.00156.49 ATOM 124 CB ASN A 26 160.158 172.573 120.866 1.00156.49 ATOM 125 CG ASN A 26 159.363 172.322 122.137 1.00156.49 ATOM 126 OD1 ASN A 26 159.848 172.536 123.246 1.00156.49 ATOM 127 ND2 ASN A 26 158.124 171.876 121.974 1.00156.49 ATOM 128 N SER A 27 162.592 172.031 123.025 1.00145.98 ATOM 129 CA SER A 27 163.457 171.105 123.735 1.00145.98 ATOM 130 C SER A 27 162.643 170.340 124.767 1.00145.98 ATOM 131 O SER A 27 161.788 170.920 125.451 1.00145.98 ATOM 132 CB SER A 27 164.603 171.846 124.425 1.00145.98 ATOM 133 OG SER A 27 165.414 172.512 123.477 1.00145.98 ATOM 134 N LEU A 28 162.923 169.042 124.873 1.00141.10 ATOM 135 CA LEU A 28 162.231 168.140 125.781 1.00141.10 ATOM 136 C LEU A 28 163.111 167.848 126.991 1.00141.10 ATOM 137 O LEU A 28 164.338 167.780 126.888 1.00141.10 ATOM 138 CB LEU A 28 161.850 166.847 125.046 1.00141.10 ATOM 139 CG LEU A 28 160.975 165.720 125.619 1.00141.10 ATOM 140 CD1 LEU A 28 161.763 164.699 126.432 1.00141.10 ATOM 141 CD2 LEU A 28 159.835 166.288 126.450 1.00141.10 ATOM 142 N PHE A 29 162.468 167.674 128.142 1.00144.90 ATOM 143 CA PHE A 29 163.155 167.464 129.407 1.00144.90 ATOM 144 C PHE A 29 162.703 166.152 130.033 1.00144.90 ATOM 145 O PHE A 29 161.689 165.567 129.646 1.00144.90 ATOM 146 CB PHE A 29 162.901 168.625 130.376 1.00144.90 ATOM 147 CG PHE A 29 163.537 169.911 129.953 1.00144.90 ATOM 148 CD1 PHE A 29 164.876 170.146 130.208 1.00144.90 ATOM 149 CD2 PHE A 29 162.801 170.882 129.294 1.00144.90 ATOM 150 CE1 PHE A 29 165.472 171.325 129.818 1.00144.90 ATOM 151 CE2 PHE A 29 163.390 172.069 128.903 1.00144.90 ATOM 152 CZ PHE A 29 164.729 172.290 129.166 1.00144.90 ATOM 153 N SER A 30 163.473 165.697 131.024 1.00150.42 ATOM 154 CA SER A 30 163.125 164.475 131.739 1.00150.42 ATOM 155 C SER A 30 161.935 164.665 132.669 1.00150.42 ATOM 156 O SER A 30 161.285 163.679 133.032 1.00150.42 ATOM 157 CB SER A 30 164.325 163.969 132.539 1.00150.42 ATOM 158 OG SER A 30 165.384 163.586 131.682 1.00150.42 ATOM 159 N ASP A 31 161.636 165.902 133.062 1.00164.00 ATOM 160 CA ASP A 31 160.505 166.168 133.939 1.00164.00 ATOM 161 C ASP A 31 159.166 166.110 133.216 1.00164.00 ATOM 162 O ASP A 31 158.126 166.070 133.881 1.00164.00 ATOM 163 CB ASP A 31 160.671 167.534 134.605 1.00164.00 ATOM 164 CG ASP A 31 161.826 167.565 135.584 1.00164.00 ATOM 165 OD1 ASP A 31 162.141 166.505 136.163 1.00164.00 ATOM 166 OD2 ASP A 31 162.419 168.648 135.774 1.00164.00 ATOM 167 N GLY A 32 159.164 166.105 131.885 1.00166.32 ATOM 168 CA GLY A 32 157.948 166.013 131.104 1.00166.32 ATOM 169 C GLY A 32 157.523 167.303 130.440 1.00166.32 ATOM 170 O GLY A 32 156.588 167.281 129.630 1.00166.32 ATOM 171 N HIS A 33 158.171 168.421 130.748 1.00157.01 ATOM 172 CA HIS A 33 157.813 169.709 130.179 1.00157.01 ATOM 173 C HIS A 33 158.706 170.031 128.988 1.00157.01 ATOM 174 O HIS A 33 159.854 169.586 128.909 1.00157.01 ATOM 175 CB HIS A 33 157.922 170.818 131.227 1.00157.01 ATOM 176 CG HIS A 33 159.320 171.072 131.696 1.00157.01 ATOM 177 ND1 HIS A 33 159.947 170.276 132.630 1.00157.01 ATOM 178 CD2 HIS A 33 160.210 172.037 131.366 1.00157.01 ATOM 179 CE1 HIS A 33 161.165 170.737 132.852 1.00157.01 ATOM 180 NE2 HIS A 33 161.349 171.806 132.099 1.00157.01 ATOM 181 N THR A 34 158.162 170.807 128.057 1.00159.35 ATOM 182 CA THR A 34 158.881 171.247 126.872 1.00159.35 ATOM 183 C THR A 34 159.059 172.758 126.910 1.00159.35 ATOM 184 O THR A 34 158.276 173.475 127.540 1.00159.35 ATOM 185 CB THR A 34 158.138 170.857 125.591 1.00159.35 ATOM 186 OG1 THR A 34 156.873 171.530 125.548 1.00159.35 ATOM 187 CG2 THR A 34 157.903 169.360 125.544 1.00159.35 ATOM 188 N PHE A 35 160.094 173.241 126.228 1.00156.03 ATOM 189 CA PHE A 35 160.323 174.679 126.145 1.00156.03 ATOM 190 C PHE A 35 160.887 175.035 124.781 1.00156.03 ATOM 191 O PHE A 35 161.869 174.437 124.342 1.00156.03 ATOM 192 CB PHE A 35 161.278 175.160 127.243 1.00156.03 ATOM 193 CG PHE A 35 161.492 176.648 127.249 1.00156.03 ATOM 194 CD1 PHE A 35 160.526 177.496 127.768 1.00156.03 ATOM 195 CD2 PHE A 35 162.654 177.200 126.727 1.00156.03 ATOM 196 CE1 PHE A 35 160.717 178.867 127.775 1.00156.03 ATOM 197 CE2 PHE A 35 162.852 178.569 126.731 1.00156.03 ATOM 198 CZ PHE A 35 161.881 179.403 127.255 1.00156.03 ATOM 199 N CYS A 36 160.274 176.007 124.117 1.00161.54 ATOM 200 CA CYS A 36 160.735 176.460 122.813 1.00161.54 ATOM 201 C CYS A 36 161.566 177.726 122.972 1.00161.54 ATOM 202 O CYS A 36 161.213 178.619 123.746 1.00161.54 ATOM 203 CB CYS A 36 159.556 176.717 121.874 1.00161.54 ATOM 204 SG CYS A 36 160.027 177.158 120.186 1.00161.54 ATOM 205 N TYR A 37 162.679 177.794 122.244 1.00137.35 ATOM 206 CA TYR A 37 163.544 178.965 122.285 1.00137.35 ATOM 207 C TYR A 37 163.110 180.065 121.329 1.00137.35 ATOM 208 O TYR A 37 163.592 181.196 121.452 1.00137.35 ATOM 209 CB TYR A 37 164.991 178.575 121.968 1.00137.35 ATOM 210 CG TYR A 37 165.665 177.766 123.049 1.00137.35 ATOM 211 CD1 TYR A 37 166.168 178.381 124.188 1.00137.35 ATOM 212 CD2 TYR A 37 165.811 176.390 122.926 1.00137.35 ATOM 213 CE1 TYR A 37 166.791 177.648 125.181 1.00137.35 ATOM 214 CE2 TYR A 37 166.434 175.647 123.913 1.00137.35 ATOM 215 CZ TYR A 37 166.921 176.283 125.037 1.00137.35 ATOM 216 OH TYR A 37 167.539 175.550 126.022 1.00137.35 ATOM 217 N VAL A 38 162.218 179.770 120.387 1.00149.34 ATOM 218 CA VAL A 38 161.791 180.759 119.405 1.00149.34 ATOM 219 C VAL A 38 160.467 181.368 119.842 1.00149.34 ATOM 220 O VAL A 38 160.367 182.583 120.046 1.00149.34 ATOM 221 CB VAL A 38 161.677 180.136 118.003 1.00149.34 ATOM 222 CG1 VAL A 38 161.126 181.152 117.017 1.00149.34 ATOM 223 CG2 VAL A 38 163.031 179.620 117.544 1.00149.34 ATOM 224 N CYS A 39 159.444 180.529 119.996 1.00174.44 ATOM 225 CA CYS A 39 158.125 181.011 120.380 1.00174.44 ATOM 226 C CYS A 39 158.010 181.318 121.866 1.00174.44 ATOM 227 O CYS A 39 157.033 181.967 122.261 1.00174.44 ATOM 228 CB CYS A 39 157.057 179.989 119.981 1.00174.44 ATOM 229 SG CYS A 39 157.191 178.402 120.828 1.00174.44 ATOM 230 N GLU A 40 158.980 180.867 122.676 1.00168.24 ATOM 231 CA GLU A 40 159.051 181.111 124.124 1.00168.24 ATOM 232 C GLU A 40 157.806 180.608 124.852 1.00168.24 ATOM 233 O GLU A 40 157.256 181.284 125.724 1.00168.24 ATOM 234 CB GLU A 40 159.308 182.588 124.435 1.00168.24 ATOM 235 CG GLU A 40 160.676 183.079 123.994 1.00168.24 ATOM 236 CD GLU A 40 160.895 184.545 124.303 1.00168.24 ATOM 237 OE1 GLU A 40 159.938 185.209 124.752 1.00168.24 ATOM 238 OE2 GLU A 40 162.025 185.034 124.096 1.00168.24 ATOM 239 N LYS A 41 157.358 179.410 124.491 1.00165.64 ATOM 240 CA LYS A 41 156.180 178.795 125.084 1.00165.64 ATOM 241 C LYS A 41 156.609 177.658 126.000 1.00165.64 ATOM 242 O LYS A 41 157.388 176.788 125.595 1.00165.64 ATOM 243 CB LYS A 41 155.230 178.277 124.002 1.00165.64 ATOM 244 CG LYS A 41 153.939 177.691 124.542 1.00165.64 ATOM 245 CD LYS A 41 152.994 177.312 123.415 1.00165.64 ATOM 246 CE LYS A 41 151.762 176.602 123.948 1.00165.64 ATOM 247 NZ LYS A 41 150.927 177.502 124.791 1.00165.64 ATOM 248 N TRP A 42 156.103 177.670 127.229 1.00165.00 ATOM 249 CA TRP A 42 156.409 176.651 128.222 1.00165.00 ATOM 250 C TRP A 42 155.180 175.782 128.449 1.00165.00 ATOM 251 O TRP A 42 154.069 176.300 128.603 1.00165.00 ATOM 252 CB TRP A 42 156.855 177.285 129.540 1.00165.00 ATOM 253 CG TRP A 42 157.226 176.281 130.583 1.00165.00 ATOM 254 CD1 TRP A 42 158.286 175.425 130.555 1.00165.00 ATOM 255 CD2 TRP A 42 156.527 176.016 131.803 1.00165.00 ATOM 256 NE1 TRP A 42 158.298 174.649 131.688 1.00165.00 ATOM 257 CE2 TRP A 42 157.228 174.992 132.471 1.00165.00 ATOM 258 CE3 TRP A 42 155.380 176.548 132.399 1.00165.00 ATOM 259 CZ2 TRP A 42 156.817 174.488 133.702 1.00165.00 ATOM 260 CZ3 TRP A 42 154.975 176.047 133.622 1.00165.00 ATOM 261 CH2 TRP A 42 155.692 175.027 134.260 1.00165.00 ATOM 262 N THR A 43 155.382 174.470 128.469 1.00166.42 ATOM 263 CA THR A 43 154.313 173.504 128.676 1.00166.42 ATOM 264 C THR A 43 154.575 172.728 129.965 1.00166.42 ATOM 265 O THR A 43 155.485 173.046 130.735 1.00166.42 ATOM 266 CB THR A 43 154.191 172.558 127.479 1.00166.42 ATOM 267 OG1 THR A 43 155.408 171.817 127.332 1.00166.42 ATOM 268 CG2 THR A 43 153.917 173.337 126.202 1.00166.42 ATOM 269 N ALA A 44 153.763 171.703 130.198 1.00168.77 ATOM 270 CA ALA A 44 153.918 170.858 131.374 1.00168.77 ATOM 271 C ALA A 44 153.749 169.387 131.011 1.00168.77 ATOM 272 O ALA A 44 154.567 168.547 131.386 1.00168.77 ATOM 273 CB ALA A 44 152.921 171.258 132.450 1.00168.77 ATOM 274 ZN ZN A 601 158.233 177.242 119.267 1.00247.86 TER