HEADER HYDROLASE 31-DEC-69 6O3P TITLE Crystal structure of the catalytic domain of mouse Nudt12 in complex TITLE 2 with AMP and 3 Mg2+ ions COMPND MOL_ID: 1; COMPND 2 MOLECULE: Peroxisomal NADH pyrophosphatase NUDT12; COMPND 3 CHAIN: A, B; COMPND 4 MUTATION: YES; COMPND 5 EC: 3.6.1.22; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.60 ANGSTORMS DBREF 6O3P A 126 460 UNP Q9DCN1 NUD12_MOUSE 126 460 SEQRES 1 A 29 PHE CYS PRO THR CYS GLY SER ALA THR LYS ILE GLU GLU SEQRES 2 A 29 GLY GLY TYR LYS ARG VAL CYS VAL ARG GLU THR CYS PRO SEQRES 3 A 29 SER LEU GLN ATOM 1 N PHE A 283 19.172 41.108 -9.454 1.00 31.66 ATOM 2 CA PHE A 283 19.320 40.847 -8.027 1.00 28.31 ATOM 3 C PHE A 283 18.033 40.357 -7.385 1.00 27.14 ATOM 4 O PHE A 283 16.920 40.652 -7.830 1.00 28.97 ATOM 5 CB PHE A 283 19.814 42.116 -7.283 1.00 27.88 ATOM 6 CG PHE A 283 21.116 42.577 -7.813 1.00 30.67 ATOM 7 CD1 PHE A 283 21.192 43.311 -9.003 1.00 34.88 ATOM 8 CD2 PHE A 283 22.294 42.177 -7.197 1.00 32.82 ATOM 9 CE1 PHE A 283 22.433 43.673 -9.542 1.00 36.67 ATOM 10 CE2 PHE A 283 23.550 42.550 -7.729 1.00 35.80 ATOM 11 CZ PHE A 283 23.615 43.276 -8.930 1.00 34.94 ATOM 12 N CYS A 284 18.209 39.570 -6.338 1.00 28.03 ATOM 13 CA CYS A 284 17.081 38.961 -5.656 1.00 28.71 ATOM 14 C CYS A 284 16.252 40.057 -4.994 1.00 30.16 ATOM 15 O CYS A 284 16.791 40.814 -4.180 1.00 29.75 ATOM 16 CB CYS A 284 17.611 37.964 -4.657 1.00 28.93 ATOM 17 SG CYS A 284 16.299 37.263 -3.679 1.00 29.95 ATOM 18 N PRO A 285 14.968 40.201 -5.317 1.00 29.64 ATOM 19 CA PRO A 285 14.174 41.243 -4.644 1.00 30.56 ATOM 20 C PRO A 285 13.998 40.973 -3.167 1.00 28.65 ATOM 21 O PRO A 285 13.749 41.906 -2.409 1.00 28.85 ATOM 22 CB PRO A 285 12.822 41.199 -5.379 1.00 27.47 ATOM 23 CG PRO A 285 13.072 40.412 -6.658 1.00 27.71 ATOM 24 CD PRO A 285 14.141 39.408 -6.242 1.00 32.00 ATOM 25 N THR A 286 14.105 39.712 -2.736 1.00 25.93 ATOM 26 CA THR A 286 13.822 39.355 -1.357 1.00 30.45 ATOM 27 C THR A 286 15.003 39.618 -0.434 1.00 35.59 ATOM 28 O THR A 286 14.792 40.054 0.704 1.00 35.53 ATOM 29 CB THR A 286 13.394 37.900 -1.269 1.00 28.44 ATOM 30 OG1 THR A 286 12.205 37.721 -2.042 1.00 28.70 ATOM 31 CG2 THR A 286 13.099 37.538 0.165 1.00 27.86 ATOM 32 N CYS A 287 16.246 39.431 -0.908 1.00 35.14 ATOM 33 CA CYS A 287 17.408 39.704 -0.054 1.00 34.52 ATOM 34 C CYS A 287 18.481 40.564 -0.699 1.00 34.26 ATOM 35 O CYS A 287 19.416 40.964 0.010 1.00 37.07 ATOM 36 CB CYS A 287 18.075 38.411 0.427 1.00 32.10 ATOM 37 SG CYS A 287 19.071 37.567 -0.846 1.00 35.01 ATOM 38 N GLY A 288 18.390 40.852 -1.988 1.00 32.34 ATOM 39 CA GLY A 288 19.352 41.722 -2.634 1.00 34.31 ATOM 40 C GLY A 288 20.608 41.063 -3.149 1.00 32.12 ATOM 41 O GLY A 288 21.416 41.744 -3.814 1.00 35.56 ATOM 42 N SER A 289 20.787 39.749 -2.938 1.00 33.30 ATOM 43 CA SER A 289 21.977 39.071 -3.426 1.00 35.46 ATOM 44 C SER A 289 21.943 38.933 -4.941 1.00 33.07 ATOM 45 O SER A 289 20.941 39.210 -5.587 1.00 33.38 ATOM 46 CB SER A 289 22.112 37.687 -2.793 1.00 36.83 ATOM 47 OG SER A 289 22.413 37.850 -1.424 1.00 40.13 ATOM 48 N ALA A 290 23.078 38.520 -5.492 1.00 32.34 ATOM 49 CA ALA A 290 23.160 38.164 -6.907 1.00 33.05 ATOM 50 C ALA A 290 22.268 36.953 -7.212 1.00 35.00 ATOM 51 O ALA A 290 21.853 36.201 -6.317 1.00 33.27 ATOM 52 CB ALA A 290 24.605 37.869 -7.297 1.00 37.73 ATOM 53 N THR A 291 21.946 36.789 -8.499 1.00 33.44 ATOM 54 CA THR A 291 21.171 35.653 -8.979 1.00 33.67 ATOM 55 C THR A 291 21.848 35.055 -10.199 1.00 34.80 ATOM 56 O THR A 291 22.715 35.667 -10.828 1.00 39.16 ATOM 57 CB THR A 291 19.722 36.005 -9.375 1.00 35.35 ATOM 58 OG1 THR A 291 19.727 36.854 -10.535 1.00 36.61 ATOM 59 CG2 THR A 291 18.938 36.644 -8.258 1.00 38.98 ATOM 60 N LYS A 292 21.454 33.821 -10.488 1.00 31.83 ATOM 61 CA LYS A 292 21.987 33.016 -11.574 1.00 31.38 ATOM 62 C LYS A 292 20.854 32.591 -12.498 1.00 31.71 ATOM 63 O LYS A 292 19.763 32.241 -12.044 1.00 33.26 ATOM 64 CB LYS A 292 22.712 31.798 -10.992 1.00 43.87 ATOM 65 CG LYS A 292 23.021 30.739 -12.022 1.00 61.41 ATOM 66 CD LYS A 292 22.873 29.302 -11.499 1.00 71.74 ATOM 67 CE LYS A 292 22.840 28.311 -12.667 1.00 76.45 ATOM 68 NZ LYS A 292 21.893 27.186 -12.492 1.00 77.41 ATOM 69 N ILE A 293 21.105 32.585 -13.803 1.00 32.45 ATOM 70 CA ILE A 293 20.051 32.210 -14.746 1.00 30.71 ATOM 71 C ILE A 293 19.928 30.696 -14.827 1.00 30.46 ATOM 72 O ILE A 293 20.926 29.972 -14.868 1.00 35.86 ATOM 73 CB ILE A 293 20.331 32.799 -16.132 1.00 36.32 ATOM 74 CG1 ILE A 293 20.525 34.301 -16.001 1.00 38.67 ATOM 75 CG2 ILE A 293 19.178 32.445 -17.099 1.00 37.52 ATOM 76 CD1 ILE A 293 20.658 35.034 -17.320 1.00 43.26 ATOM 77 N GLU A 294 18.693 30.206 -14.832 1.00 33.34 ATOM 78 CA GLU A 294 18.465 28.772 -14.974 1.00 30.86 ATOM 79 C GLU A 294 17.370 28.583 -16.011 1.00 30.58 ATOM 80 O GLU A 294 16.802 29.550 -16.514 1.00 28.14 ATOM 81 CB GLU A 294 18.060 28.146 -13.628 1.00 31.22 ATOM 82 CG GLU A 294 19.143 28.209 -12.605 1.00 40.52 ATOM 83 CD GLU A 294 18.917 27.251 -11.414 1.00 58.29 ATOM 84 OE1 GLU A 294 17.923 26.472 -11.419 1.00 64.43 ATOM 85 OE2 GLU A 294 19.738 27.293 -10.455 1.00 63.05 ATOM 86 N GLU A 295 17.041 27.323 -16.263 1.00 32.38 ATOM 87 CA GLU A 295 15.881 26.923 -17.060 1.00 32.20 ATOM 88 C GLU A 295 15.831 27.623 -18.406 1.00 31.67 ATOM 89 O GLU A 295 14.791 28.156 -18.795 1.00 32.04 ATOM 90 CB GLU A 295 14.578 27.162 -16.281 1.00 29.93 ATOM 91 CG GLU A 295 14.617 26.495 -14.931 1.00 38.17 ATOM 92 CD GLU A 295 13.255 26.362 -14.227 1.00 42.12 ATOM 93 OE1 GLU A 295 13.141 25.476 -13.347 1.00 48.13 ATOM 94 OE2 GLU A 295 12.312 27.096 -14.572 1.00 47.78 ATOM 95 N GLY A 296 16.951 27.594 -19.130 1.00 34.11 ATOM 96 CA GLY A 296 16.962 28.107 -20.493 1.00 32.02 ATOM 97 C GLY A 296 16.690 29.586 -20.598 1.00 33.35 ATOM 98 O GLY A 296 16.352 30.077 -21.687 1.00 31.46 ATOM 99 N GLY A 297 16.854 30.331 -19.486 1.00 28.63 ATOM 100 CA GLY A 297 16.577 31.751 -19.440 1.00 26.13 ATOM 101 C GLY A 297 15.252 32.122 -18.819 1.00 28.67 ATOM 102 O GLY A 297 14.923 33.324 -18.779 1.00 27.83 ATOM 103 N TYR A 298 14.481 31.157 -18.314 1.00 25.43 ATOM 104 CA TYR A 298 13.169 31.452 -17.765 1.00 28.03 ATOM 105 C TYR A 298 13.134 31.448 -16.245 1.00 29.58 ATOM 106 O TYR A 298 12.037 31.454 -15.671 1.00 26.54 ATOM 107 CB TYR A 298 12.114 30.504 -18.306 1.00 25.16 ATOM 108 CG TYR A 298 11.926 30.745 -19.787 1.00 25.05 ATOM 109 CD1 TYR A 298 12.879 30.235 -20.698 1.00 26.89 ATOM 110 CD2 TYR A 298 10.873 31.496 -20.277 1.00 25.56 ATOM 111 CE1 TYR A 298 12.761 30.426 -22.057 1.00 28.95 ATOM 112 CE2 TYR A 298 10.754 31.728 -21.664 1.00 26.85 ATOM 113 CZ TYR A 298 11.716 31.188 -22.536 1.00 27.37 ATOM 114 OH TYR A 298 11.582 31.383 -23.896 1.00 26.62 ATOM 115 N LYS A 299 14.292 31.404 -15.592 1.00 26.52 ATOM 116 CA LYS A 299 14.328 31.457 -14.134 1.00 24.89 ATOM 117 C LYS A 299 15.597 32.169 -13.704 1.00 27.93 ATOM 118 O LYS A 299 16.625 32.095 -14.365 1.00 30.10 ATOM 119 CB LYS A 299 14.268 30.016 -13.537 1.00 27.28 ATOM 120 CG LYS A 299 14.038 30.027 -12.019 1.00 25.27 ATOM 121 CD LYS A 299 13.909 28.588 -11.514 1.00 29.57 ATOM 122 CE LYS A 299 13.722 28.619 -9.975 1.00 30.71 ATOM 123 NZ LYS A 299 13.616 27.235 -9.432 1.00 34.26 ATOM 124 N ARG A 300 15.518 32.883 -12.585 1.00 27.31 ATOM 125 CA ARG A 300 16.695 33.406 -11.926 1.00 28.07 ATOM 126 C ARG A 300 16.661 32.901 -10.485 1.00 29.72 ATOM 127 O ARG A 300 15.593 32.826 -9.878 1.00 30.49 ATOM 128 CB ARG A 300 16.707 34.944 -11.955 1.00 26.28 ATOM 129 CG ARG A 300 17.015 35.518 -13.348 1.00 31.42 ATOM 130 CD ARG A 300 17.711 36.847 -13.145 1.00 37.71 ATOM 131 NE ARG A 300 18.508 37.250 -14.257 1.00 48.49 ATOM 132 CZ ARG A 300 19.826 37.299 -14.278 1.00 44.65 ATOM 133 NH1 ARG A 300 20.566 37.015 -13.222 1.00 38.33 ATOM 134 NH2 ARG A 300 20.392 37.699 -15.370 1.00 40.26 ATOM 135 N VAL A 301 17.821 32.552 -9.958 1.00 28.78 ATOM 136 CA VAL A 301 17.930 31.842 -8.686 1.00 29.17 ATOM 137 C VAL A 301 18.926 32.581 -7.805 1.00 27.17 ATOM 138 O VAL A 301 20.109 32.702 -8.159 1.00 31.39 ATOM 139 CB VAL A 301 18.369 30.381 -8.902 1.00 31.31 ATOM 140 CG1 VAL A 301 18.560 29.648 -7.596 1.00 30.06 ATOM 141 CG2 VAL A 301 17.334 29.654 -9.767 1.00 31.72 ATOM 142 N CYS A 302 18.438 33.093 -6.670 1.00 27.92 ATOM 143 CA CYS A 302 19.283 33.733 -5.660 1.00 31.72 ATOM 144 C CYS A 302 20.453 32.855 -5.246 1.00 35.34 ATOM 145 O CYS A 302 20.294 31.658 -4.996 1.00 32.44 ATOM 146 CB CYS A 302 18.443 34.064 -4.437 1.00 31.57 ATOM 147 SG CYS A 302 19.397 35.026 -3.255 1.00 33.05 ATOM 148 N VAL A 303 21.629 33.479 -5.109 1.00 32.62 ATOM 149 CA VAL A 303 22.833 32.728 -4.777 1.00 36.13 ATOM 150 C VAL A 303 23.012 32.564 -3.276 1.00 36.35 ATOM 151 O VAL A 303 23.915 31.834 -2.854 1.00 38.51 ATOM 152 CB VAL A 303 24.123 33.346 -5.375 1.00 35.73 ATOM 153 CG1 VAL A 303 23.983 33.566 -6.912 1.00 37.81 ATOM 154 CG2 VAL A 303 24.547 34.631 -4.665 1.00 38.72 ATOM 155 N ARG A 304 22.170 33.184 -2.467 1.00 34.85 ATOM 156 CA ARG A 304 22.289 33.082 -1.016 1.00 37.49 ATOM 157 C ARG A 304 21.477 31.863 -0.569 1.00 36.89 ATOM 158 O ARG A 304 20.249 31.849 -0.682 1.00 36.44 ATOM 159 CB ARG A 304 21.819 34.376 -0.344 1.00 35.71 ATOM 160 CG ARG A 304 21.850 34.341 1.196 1.00 39.04 ATOM 161 CD ARG A 304 21.662 35.739 1.775 1.00 45.04 ATOM 162 NE ARG A 304 20.716 35.667 2.890 1.00 71.76 ATOM 163 CZ ARG A 304 19.399 35.697 2.711 1.00 79.19 ATOM 164 NH1 ARG A 304 18.942 35.798 1.481 1.00 81.09 ATOM 165 NH2 ARG A 304 18.544 35.625 3.723 1.00 82.46 ATOM 166 N GLU A 305 22.170 30.837 -0.063 1.00 41.60 ATOM 167 CA GLU A 305 21.522 29.551 0.199 1.00 49.07 ATOM 168 C GLU A 305 20.382 29.635 1.226 1.00 44.89 ATOM 169 O GLU A 305 19.434 28.841 1.154 1.00 41.99 ATOM 170 CB GLU A 305 22.566 28.530 0.664 1.00 59.85 ATOM 171 CG GLU A 305 23.366 27.891 -0.462 1.00 69.26 ATOM 172 CD GLU A 305 24.462 26.964 0.050 1.00 84.29 ATOM 173 OE1 GLU A 305 24.232 26.246 1.063 1.00 87.55 ATOM 174 OE2 GLU A 305 25.552 26.948 -0.574 1.00 88.77 ATOM 175 N THR A 306 20.456 30.554 2.192 1.00 41.61 ATOM 176 CA THR A 306 19.421 30.719 3.210 1.00 45.42 ATOM 177 C THR A 306 18.253 31.612 2.778 1.00 42.05 ATOM 178 O THR A 306 17.328 31.837 3.571 1.00 39.59 ATOM 179 CB THR A 306 20.062 31.306 4.462 1.00 48.49 ATOM 180 OG1 THR A 306 20.725 32.518 4.089 1.00 44.23 ATOM 181 CG2 THR A 306 21.100 30.315 5.039 1.00 49.68 ATOM 182 N CYS A 307 18.270 32.127 1.564 1.00 38.59 ATOM 183 CA CYS A 307 17.266 33.099 1.163 1.00 38.89 ATOM 184 C CYS A 307 15.887 32.456 1.168 1.00 42.16 ATOM 185 O CYS A 307 15.719 31.341 0.656 1.00 37.04 ATOM 186 CB CYS A 307 17.553 33.666 -0.230 1.00 36.32 ATOM 187 SG CYS A 307 16.346 34.947 -0.715 1.00 34.54 ATOM 188 N PRO A 308 14.895 33.130 1.725 1.00 39.81 ATOM 189 CA PRO A 308 13.503 32.676 1.615 1.00 37.06 ATOM 190 C PRO A 308 13.031 32.416 0.203 1.00 33.84 ATOM 191 O PRO A 308 12.091 31.628 0.010 1.00 32.03 ATOM 192 CB PRO A 308 12.709 33.832 2.260 1.00 37.89 ATOM 193 CG PRO A 308 13.609 34.436 3.153 1.00 42.05 ATOM 194 CD PRO A 308 15.009 34.312 2.597 1.00 42.90 ATOM 195 N SER A 309 13.628 33.086 -0.804 1.00 29.49 ATOM 196 CA SER A 309 13.151 32.855 -2.156 1.00 31.87 ATOM 197 C SER A 309 13.385 31.425 -2.626 1.00 28.89 ATOM 198 O SER A 309 12.816 31.048 -3.665 1.00 31.23 ATOM 199 CB SER A 309 13.835 33.824 -3.144 1.00 32.81 ATOM 200 OG SER A 309 15.242 33.557 -3.148 1.00 35.50 ATOM 201 N LEU A 310 14.182 30.638 -1.914 1.00 29.97 ATOM 202 CA LEU A 310 14.570 29.289 -2.325 1.00 30.09 ATOM 203 C LEU A 310 13.789 28.214 -1.582 1.00 37.86 ATOM 204 O LEU A 310 13.972 27.030 -1.856 1.00 38.86 ATOM 205 CB LEU A 310 16.082 29.092 -2.121 1.00 31.81 ATOM 206 CG LEU A 310 17.049 30.066 -2.829 1.00 32.42 ATOM 207 CD1 LEU A 310 18.510 29.784 -2.452 1.00 33.70 ATOM 208 CD2 LEU A 310 16.854 30.058 -4.371 1.00 30.49 ATOM 209 N GLN A 311 12.926 28.612 -0.641 1.00 34.01 ATOM 210 CA GLN A 311 12.029 27.712 0.070 1.00 40.57 ATOM 211 C GLN A 311 10.633 27.884 -0.500 1.00 42.21 ATOM 212 O GLN A 311 9.995 28.921 -0.290 1.00 42.56 ATOM 213 CB GLN A 311 12.066 28.018 1.571 1.00 39.96 ATOM 214 CG GLN A 311 13.488 27.861 2.140 1.00 44.43 ATOM 215 CD GLN A 311 14.071 26.475 1.867 1.00 57.37 ATOM 216 OE1 GLN A 311 15.229 26.329 1.445 1.00 59.60 ATOM 217 NE2 GLN A 311 13.255 25.447 2.089 1.00 60.80 ATOM 218 ZN ZN A 505 17.757 36.153 -2.130 1.00 33.66 TER