HEADER HYDROLASE 31-DEC-69 6O3P TITLE Crystal structure of the catalytic domain of mouse Nudt12 in complex TITLE 2 with AMP and 3 Mg2+ ions COMPND MOL_ID: 1; COMPND 2 MOLECULE: Peroxisomal NADH pyrophosphatase NUDT12; COMPND 3 CHAIN: A, B; COMPND 4 MUTATION: YES; COMPND 5 EC: 3.6.1.22; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.60 ANGSTORMS DBREF 6O3P B 126 460 UNP Q9DCN1 NUD12_MOUSE 126 460 SEQRES 1 B 29 PHE CYS PRO THR CYS GLY SER ALA THR LYS ILE GLU GLU SEQRES 2 B 29 GLY GLY TYR LYS ARG VAL CYS VAL ARG GLU THR CYS PRO SEQRES 3 B 29 SER LEU GLN ATOM 1 N PHE B 283 14.181 44.583 -1.862 1.00 31.21 ATOM 2 CA PHE B 283 15.410 45.070 -2.455 1.00 29.20 ATOM 3 C PHE B 283 15.215 45.343 -3.933 1.00 30.98 ATOM 4 O PHE B 283 14.344 44.757 -4.574 1.00 27.33 ATOM 5 CB PHE B 283 16.574 44.094 -2.235 1.00 27.61 ATOM 6 CG PHE B 283 16.954 43.968 -0.782 1.00 33.52 ATOM 7 CD1 PHE B 283 16.262 43.102 0.056 1.00 33.84 ATOM 8 CD2 PHE B 283 17.937 44.776 -0.242 1.00 35.52 ATOM 9 CE1 PHE B 283 16.593 43.030 1.411 1.00 33.04 ATOM 10 CE2 PHE B 283 18.269 44.703 1.112 1.00 36.63 ATOM 11 CZ PHE B 283 17.608 43.839 1.931 1.00 32.03 ATOM 12 N CYS B 284 16.059 46.225 -4.456 1.00 28.02 ATOM 13 CA CYS B 284 15.938 46.659 -5.834 1.00 29.04 ATOM 14 C CYS B 284 16.322 45.500 -6.755 1.00 29.79 ATOM 15 O CYS B 284 17.436 44.996 -6.639 1.00 32.98 ATOM 16 CB CYS B 284 16.860 47.841 -6.090 1.00 32.68 ATOM 17 SG CYS B 284 16.804 48.407 -7.818 1.00 31.55 ATOM 18 N PRO B 285 15.466 45.067 -7.679 1.00 26.43 ATOM 19 CA PRO B 285 15.890 43.978 -8.593 1.00 25.70 ATOM 20 C PRO B 285 17.010 44.382 -9.545 1.00 26.55 ATOM 21 O PRO B 285 17.805 43.534 -9.951 1.00 29.06 ATOM 22 CB PRO B 285 14.607 43.628 -9.386 1.00 28.09 ATOM 23 CG PRO B 285 13.494 44.192 -8.602 1.00 27.19 ATOM 24 CD PRO B 285 14.059 45.460 -7.888 1.00 26.41 ATOM 25 N THR B 286 17.128 45.670 -9.862 1.00 29.87 ATOM 26 CA THR B 286 18.101 46.114 -10.842 1.00 31.12 ATOM 27 C THR B 286 19.501 46.247 -10.274 1.00 34.08 ATOM 28 O THR B 286 20.470 46.055 -11.018 1.00 34.06 ATOM 29 CB THR B 286 17.619 47.448 -11.428 1.00 30.05 ATOM 30 OG1 THR B 286 16.332 47.238 -11.989 1.00 28.72 ATOM 31 CG2 THR B 286 18.491 47.893 -12.480 1.00 30.74 ATOM 32 N CYS B 287 19.641 46.573 -8.973 1.00 31.13 ATOM 33 CA CYS B 287 20.969 46.725 -8.394 1.00 35.53 ATOM 34 C CYS B 287 21.141 46.102 -7.013 1.00 30.68 ATOM 35 O CYS B 287 22.270 46.093 -6.503 1.00 33.68 ATOM 36 CB CYS B 287 21.357 48.221 -8.320 1.00 38.48 ATOM 37 SG CYS B 287 20.626 49.135 -6.891 1.00 35.31 ATOM 38 N GLY B 288 20.078 45.612 -6.370 1.00 32.83 ATOM 39 CA GLY B 288 20.238 44.914 -5.113 1.00 35.32 ATOM 40 C GLY B 288 20.156 45.776 -3.882 1.00 37.31 ATOM 41 O GLY B 288 20.217 45.230 -2.766 1.00 37.32 ATOM 42 N SER B 289 20.055 47.099 -4.049 1.00 31.91 ATOM 43 CA SER B 289 20.091 48.006 -2.903 1.00 32.59 ATOM 44 C SER B 289 18.738 48.005 -2.203 1.00 36.20 ATOM 45 O SER B 289 17.723 47.540 -2.742 1.00 32.78 ATOM 46 CB SER B 289 20.462 49.430 -3.339 1.00 33.39 ATOM 47 OG SER B 289 21.784 49.487 -3.865 1.00 40.16 ATOM 48 N ALA B 290 18.735 48.541 -0.979 1.00 33.20 ATOM 49 CA ALA B 290 17.492 48.732 -0.243 1.00 31.01 ATOM 50 C ALA B 290 16.541 49.646 -1.012 1.00 37.74 ATOM 51 O ALA B 290 16.935 50.397 -1.909 1.00 34.45 ATOM 52 CB ALA B 290 17.782 49.344 1.123 1.00 32.08 ATOM 53 N THR B 291 15.265 49.567 -0.656 1.00 34.86 ATOM 54 CA THR B 291 14.240 50.427 -1.219 1.00 35.63 ATOM 55 C THR B 291 13.372 50.963 -0.091 1.00 36.10 ATOM 56 O THR B 291 13.375 50.421 1.027 1.00 37.29 ATOM 57 CB THR B 291 13.335 49.673 -2.197 1.00 34.58 ATOM 58 OG1 THR B 291 12.652 48.637 -1.501 1.00 33.30 ATOM 59 CG2 THR B 291 14.112 49.034 -3.293 1.00 32.49 ATOM 60 N LYS B 292 12.615 52.020 -0.399 1.00 33.60 ATOM 61 CA LYS B 292 11.737 52.692 0.571 1.00 31.10 ATOM 62 C LYS B 292 10.339 52.747 -0.040 1.00 34.92 ATOM 63 O LYS B 292 10.201 52.866 -1.254 1.00 34.86 ATOM 64 CB LYS B 292 12.254 54.087 0.937 1.00 42.91 ATOM 65 CG LYS B 292 12.256 55.075 -0.216 1.00 55.65 ATOM 66 CD LYS B 292 12.804 56.450 0.183 1.00 62.87 ATOM 67 CE LYS B 292 13.161 57.224 -1.074 1.00 66.25 ATOM 68 NZ LYS B 292 13.979 56.343 -1.980 1.00 66.30 ATOM 69 N ILE B 293 9.301 52.586 0.781 1.00 32.84 ATOM 70 CA ILE B 293 7.921 52.587 0.292 1.00 29.33 ATOM 71 C ILE B 293 7.458 54.014 0.062 1.00 26.74 ATOM 72 O ILE B 293 7.787 54.919 0.824 1.00 34.04 ATOM 73 CB ILE B 293 6.961 51.896 1.260 1.00 34.24 ATOM 74 CG1 ILE B 293 7.454 50.538 1.709 1.00 40.34 ATOM 75 CG2 ILE B 293 5.579 51.786 0.700 1.00 34.42 ATOM 76 CD1 ILE B 293 6.341 49.770 2.429 1.00 44.73 ATOM 77 N GLU B 294 6.677 54.217 -0.995 1.00 32.80 ATOM 78 CA GLU B 294 6.151 55.535 -1.317 1.00 32.44 ATOM 79 C GLU B 294 4.729 55.336 -1.842 1.00 33.06 ATOM 80 O GLU B 294 4.237 54.211 -1.916 1.00 26.64 ATOM 81 CB GLU B 294 7.068 56.266 -2.321 1.00 37.08 ATOM 82 CG GLU B 294 8.477 56.531 -1.811 1.00 47.21 ATOM 83 CD GLU B 294 9.267 57.529 -2.687 1.00 62.99 ATOM 84 OE1 GLU B 294 10.437 57.864 -2.334 1.00 67.26 ATOM 85 OE2 GLU B 294 8.721 57.977 -3.730 1.00 65.87 ATOM 86 N GLU B 295 4.028 56.450 -2.095 1.00 35.55 ATOM 87 CA GLU B 295 2.763 56.447 -2.857 1.00 33.75 ATOM 88 C GLU B 295 1.695 55.583 -2.199 1.00 28.20 ATOM 89 O GLU B 295 1.028 54.781 -2.861 1.00 25.54 ATOM 90 CB GLU B 295 2.964 56.009 -4.330 1.00 34.47 ATOM 91 CG GLU B 295 3.579 57.119 -5.150 1.00 42.21 ATOM 92 CD GLU B 295 3.606 56.875 -6.673 1.00 47.93 ATOM 93 OE1 GLU B 295 2.907 55.978 -7.179 1.00 43.69 ATOM 94 OE2 GLU B 295 4.293 57.674 -7.360 1.00 56.44 ATOM 95 N GLY B 296 1.513 55.746 -0.889 1.00 31.47 ATOM 96 CA GLY B 296 0.412 55.040 -0.241 1.00 29.71 ATOM 97 C GLY B 296 0.565 53.542 -0.130 1.00 26.85 ATOM 98 O GLY B 296 -0.418 52.824 0.081 1.00 27.75 ATOM 99 N GLY B 297 1.784 53.024 -0.329 1.00 28.01 ATOM 100 CA GLY B 297 2.065 51.595 -0.365 1.00 24.60 ATOM 101 C GLY B 297 2.141 50.992 -1.740 1.00 27.38 ATOM 102 O GLY B 297 2.279 49.757 -1.845 1.00 28.32 ATOM 103 N TYR B 298 2.060 51.808 -2.791 1.00 25.14 ATOM 104 CA TYR B 298 1.971 51.291 -4.149 1.00 26.40 ATOM 105 C TYR B 298 3.256 51.497 -4.935 1.00 27.75 ATOM 106 O TYR B 298 3.284 51.223 -6.143 1.00 27.34 ATOM 107 CB TYR B 298 0.771 51.910 -4.861 1.00 26.07 ATOM 108 CG TYR B 298 -0.506 51.346 -4.326 1.00 25.41 ATOM 109 CD1 TYR B 298 -1.102 51.945 -3.207 1.00 27.29 ATOM 110 CD2 TYR B 298 -1.158 50.242 -4.919 1.00 28.51 ATOM 111 CE1 TYR B 298 -2.255 51.466 -2.674 1.00 27.64 ATOM 112 CE2 TYR B 298 -2.379 49.740 -4.333 1.00 26.55 ATOM 113 CZ TYR B 298 -2.902 50.437 -3.209 1.00 25.11 ATOM 114 OH TYR B 298 -4.064 50.017 -2.600 1.00 25.67 ATOM 115 N LYS B 299 4.333 51.923 -4.275 1.00 25.78 ATOM 116 CA LYS B 299 5.594 52.113 -4.983 1.00 28.06 ATOM 117 C LYS B 299 6.740 51.802 -4.050 1.00 29.40 ATOM 118 O LYS B 299 6.655 52.048 -2.859 1.00 30.48 ATOM 119 CB LYS B 299 5.712 53.547 -5.537 1.00 29.13 ATOM 120 CG LYS B 299 6.838 53.680 -6.569 1.00 30.47 ATOM 121 CD LYS B 299 6.918 55.132 -7.059 1.00 37.20 ATOM 122 CE LYS B 299 7.997 55.314 -8.143 1.00 37.84 ATOM 123 NZ LYS B 299 8.285 56.764 -8.542 1.00 36.14 ATOM 124 N ARG B 300 7.826 51.244 -4.588 1.00 26.02 ATOM 125 CA ARG B 300 9.058 51.079 -3.826 1.00 26.41 ATOM 126 C ARG B 300 10.146 51.703 -4.661 1.00 30.73 ATOM 127 O ARG B 300 10.095 51.610 -5.883 1.00 33.37 ATOM 128 CB ARG B 300 9.362 49.615 -3.548 1.00 29.02 ATOM 129 CG ARG B 300 8.263 48.924 -2.707 1.00 31.84 ATOM 130 CD ARG B 300 8.723 47.652 -2.014 1.00 33.45 ATOM 131 NE ARG B 300 9.835 47.937 -1.127 1.00 34.75 ATOM 132 CZ ARG B 300 9.783 48.019 0.202 1.00 30.74 ATOM 133 NH1 ARG B 300 8.662 47.784 0.900 1.00 36.65 ATOM 134 NH2 ARG B 300 10.877 48.330 0.858 1.00 31.48 ATOM 135 N VAL B 301 11.060 52.424 -4.015 1.00 30.53 ATOM 136 CA VAL B 301 12.019 53.291 -4.692 1.00 30.72 ATOM 137 C VAL B 301 13.413 52.971 -4.162 1.00 33.93 ATOM 138 O VAL B 301 13.674 53.157 -2.967 1.00 33.97 ATOM 139 CB VAL B 301 11.697 54.784 -4.448 1.00 33.10 ATOM 140 CG1 VAL B 301 12.696 55.699 -5.149 1.00 33.73 ATOM 141 CG2 VAL B 301 10.240 55.092 -4.803 1.00 33.33 ATOM 142 N CYS B 302 14.322 52.568 -5.061 1.00 31.95 ATOM 143 CA CYS B 302 15.702 52.253 -4.701 1.00 32.30 ATOM 144 C CYS B 302 16.423 53.450 -4.085 1.00 39.45 ATOM 145 O CYS B 302 16.241 54.604 -4.507 1.00 36.77 ATOM 146 CB CYS B 302 16.432 51.737 -5.961 1.00 29.19 ATOM 147 SG CYS B 302 18.144 51.418 -5.766 1.00 36.03 ATOM 148 N VAL B 303 17.239 53.175 -3.053 1.00 37.63 ATOM 149 CA VAL B 303 17.971 54.233 -2.357 1.00 43.59 ATOM 150 C VAL B 303 19.307 54.572 -3.005 1.00 45.40 ATOM 151 O VAL B 303 19.996 55.483 -2.529 1.00 40.92 ATOM 152 CB VAL B 303 18.199 53.847 -0.876 1.00 41.91 ATOM 153 CG1 VAL B 303 16.893 53.406 -0.246 1.00 37.90 ATOM 154 CG2 VAL B 303 19.211 52.725 -0.782 1.00 41.98 ATOM 155 N ARG B 304 19.701 53.878 -4.070 1.00 44.25 ATOM 156 CA ARG B 304 20.948 54.169 -4.794 1.00 45.24 ATOM 157 C ARG B 304 20.690 55.220 -5.876 1.00 47.34 ATOM 158 O ARG B 304 20.051 54.928 -6.891 1.00 42.93 ATOM 159 CB ARG B 304 21.517 52.899 -5.433 1.00 39.69 ATOM 160 CG ARG B 304 22.702 53.169 -6.374 1.00 46.59 ATOM 161 CD ARG B 304 23.211 51.889 -7.002 1.00 55.17 ATOM 162 NE ARG B 304 23.942 51.072 -6.039 1.00 65.42 ATOM 163 CZ ARG B 304 24.397 49.845 -6.288 1.00 69.00 ATOM 164 NH1 ARG B 304 25.055 49.170 -5.356 1.00 72.80 ATOM 165 NH2 ARG B 304 24.192 49.286 -7.467 1.00 68.04 ATOM 166 N GLU B 305 21.228 56.432 -5.694 1.00 51.45 ATOM 167 CA GLU B 305 20.821 57.531 -6.570 1.00 55.14 ATOM 168 C GLU B 305 21.193 57.291 -8.028 1.00 52.04 ATOM 169 O GLU B 305 20.501 57.782 -8.927 1.00 53.23 ATOM 170 CB GLU B 305 21.419 58.842 -6.078 1.00 67.32 ATOM 171 CG GLU B 305 20.527 59.526 -5.075 1.00 77.02 ATOM 172 CD GLU B 305 21.284 59.926 -3.837 1.00 89.82 ATOM 173 OE1 GLU B 305 22.536 59.899 -3.886 1.00 94.72 ATOM 174 OE2 GLU B 305 20.632 60.265 -2.822 1.00 93.60 ATOM 175 N THR B 306 22.250 56.522 -8.283 1.00 51.56 ATOM 176 CA THR B 306 22.724 56.230 -9.632 1.00 52.44 ATOM 177 C THR B 306 21.979 55.089 -10.330 1.00 48.28 ATOM 178 O THR B 306 22.354 54.754 -11.459 1.00 48.93 ATOM 179 CB THR B 306 24.207 55.881 -9.584 1.00 54.61 ATOM 180 OG1 THR B 306 24.401 54.824 -8.634 1.00 60.00 ATOM 181 CG2 THR B 306 25.018 57.084 -9.129 1.00 57.97 ATOM 182 N CYS B 307 20.941 54.489 -9.707 1.00 41.28 ATOM 183 CA CYS B 307 20.346 53.250 -10.216 1.00 38.31 ATOM 184 C CYS B 307 19.501 53.510 -11.464 1.00 41.57 ATOM 185 O CYS B 307 18.656 54.407 -11.454 1.00 38.43 ATOM 186 CB CYS B 307 19.490 52.602 -9.141 1.00 35.79 ATOM 187 SG CYS B 307 18.783 50.999 -9.615 1.00 35.16 ATOM 188 N PRO B 308 19.667 52.719 -12.535 1.00 42.44 ATOM 189 CA PRO B 308 18.777 52.859 -13.711 1.00 41.23 ATOM 190 C PRO B 308 17.288 52.772 -13.398 1.00 40.20 ATOM 191 O PRO B 308 16.472 53.276 -14.182 1.00 35.60 ATOM 192 CB PRO B 308 19.206 51.688 -14.622 1.00 39.24 ATOM 193 CG PRO B 308 20.594 51.385 -14.222 1.00 41.16 ATOM 194 CD PRO B 308 20.681 51.663 -12.736 1.00 45.68 ATOM 195 N SER B 309 16.899 52.139 -12.295 1.00 35.65 ATOM 196 CA SER B 309 15.481 52.040 -11.978 1.00 31.66 ATOM 197 C SER B 309 14.872 53.410 -11.702 1.00 34.05 ATOM 198 O SER B 309 13.642 53.527 -11.712 1.00 36.83 ATOM 199 CB SER B 309 15.254 51.128 -10.756 1.00 33.77 ATOM 200 OG SER B 309 15.790 51.761 -9.569 1.00 31.96 ATOM 201 N LEU B 310 15.694 54.424 -11.417 1.00 34.07 ATOM 202 CA LEU B 310 15.229 55.776 -11.090 1.00 34.96 ATOM 203 C LEU B 310 15.179 56.704 -12.299 1.00 39.03 ATOM 204 O LEU B 310 14.773 57.862 -12.170 1.00 39.20 ATOM 205 CB LEU B 310 16.117 56.384 -9.992 1.00 37.01 ATOM 206 CG LEU B 310 16.293 55.539 -8.716 1.00 37.98 ATOM 207 CD1 LEU B 310 17.231 56.209 -7.758 1.00 39.17 ATOM 208 CD2 LEU B 310 14.966 55.297 -8.035 1.00 40.62 ATOM 209 N GLN B 311 15.622 56.250 -13.456 1.00 41.86 ATOM 210 CA GLN B 311 15.552 57.025 -14.697 1.00 44.53 ATOM 211 C GLN B 311 14.427 56.457 -15.555 1.00 41.96 ATOM 212 O GLN B 311 14.504 55.296 -15.982 1.00 42.67 ATOM 213 CB GLN B 311 16.870 56.947 -15.462 1.00 49.29 ATOM 214 CG GLN B 311 18.073 57.371 -14.675 1.00 54.33 ATOM 215 CD GLN B 311 17.962 58.791 -14.224 1.00 55.69 ATOM 216 OE1 GLN B 311 17.664 59.678 -15.025 1.00 56.24 ATOM 217 NE2 GLN B 311 18.193 59.029 -12.933 1.00 57.71 ATOM 218 ZN ZN B 501 18.510 50.014 -7.578 1.00 36.55 TER