HEADER RECOMBINATION/DNA 31-DEC-69 6OEM TITLE Cryo-EM structure of mouse RAG1/2 PRC complex (DNA0) COMPND MOL_ID: 7; COMPND 2 MOLECULE: High mobility group protein B1; COMPND 3 CHAIN: N, H; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU N 106 REMARK 465 SER N 107 DBREF 6OEM N 15 155 UNP P09429 HMGB1_HUMAN 15 155 SEQRES 1 N 38 PRO SER ALA PHE PHE LEU PHE CYS SER GLU TYR ARG PRO SEQRES 2 N 38 LYS ILE LYS GLY GLU HIS PRO GLY LEU SER ILE GLY ASP SEQRES 3 N 38 VAL ALA LYS LYS LEU GLY GLU MET TRP ASN ASN THR ATOM 1 N PRO N 99 167.913 139.743 177.941 1.00266.84 ATOM 2 CA PRO N 99 168.958 140.269 178.826 1.00266.84 ATOM 3 C PRO N 99 170.103 140.922 178.056 1.00266.84 ATOM 4 O PRO N 99 170.487 140.436 176.992 1.00266.84 ATOM 5 CB PRO N 99 169.441 139.023 179.572 1.00266.84 ATOM 6 CG PRO N 99 169.151 137.898 178.642 1.00266.84 ATOM 7 CD PRO N 99 167.875 138.271 177.945 1.00266.84 ATOM 8 N SER N 100 170.635 142.014 178.592 1.00270.49 ATOM 9 CA SER N 100 171.730 142.751 177.978 1.00270.49 ATOM 10 C SER N 100 172.785 143.078 179.032 1.00270.49 ATOM 11 O SER N 100 172.663 142.713 180.205 1.00270.49 ATOM 12 CB SER N 100 171.217 144.026 177.303 1.00270.49 ATOM 13 N ALA N 101 173.833 143.780 178.596 1.00270.98 ATOM 14 CA ALA N 101 174.910 144.159 179.505 1.00270.98 ATOM 15 C ALA N 101 174.406 145.116 180.579 1.00270.98 ATOM 16 O ALA N 101 174.751 144.987 181.759 1.00270.98 ATOM 17 CB ALA N 101 176.063 144.783 178.718 1.00270.98 ATOM 18 N PHE N 102 173.582 146.090 180.183 1.00268.84 ATOM 19 CA PHE N 102 173.013 147.015 181.157 1.00268.84 ATOM 20 C PHE N 102 172.086 146.302 182.131 1.00268.84 ATOM 21 O PHE N 102 172.107 146.597 183.331 1.00268.84 ATOM 22 CB PHE N 102 172.268 148.142 180.442 1.00268.84 ATOM 23 CG PHE N 102 171.532 149.066 181.370 1.00268.84 ATOM 24 CD1 PHE N 102 172.222 149.977 182.153 1.00268.84 ATOM 25 CD2 PHE N 102 170.150 149.029 181.455 1.00268.84 ATOM 26 CE1 PHE N 102 171.548 150.829 183.007 1.00268.84 ATOM 27 CE2 PHE N 102 169.471 149.879 182.307 1.00268.84 ATOM 28 CZ PHE N 102 170.171 150.780 183.084 1.00268.84 ATOM 29 N PHE N 103 171.274 145.363 181.640 1.00275.58 ATOM 30 CA PHE N 103 170.397 144.602 182.524 1.00275.58 ATOM 31 C PHE N 103 171.203 143.778 183.520 1.00275.58 ATOM 32 O PHE N 103 170.856 143.699 184.704 1.00275.58 ATOM 33 CB PHE N 103 169.474 143.704 181.700 1.00275.58 ATOM 34 CG PHE N 103 168.872 142.572 182.484 1.00275.58 ATOM 35 CD1 PHE N 103 167.840 142.802 183.379 1.00275.58 ATOM 36 CD2 PHE N 103 169.338 141.277 182.324 1.00275.58 ATOM 37 CE1 PHE N 103 167.288 141.762 184.102 1.00275.58 ATOM 38 CE2 PHE N 103 168.788 140.234 183.043 1.00275.58 ATOM 39 CZ PHE N 103 167.761 140.476 183.933 1.00275.58 ATOM 40 N LEU N 104 172.286 143.150 183.054 1.00283.54 ATOM 41 CA LEU N 104 173.128 142.366 183.953 1.00283.54 ATOM 42 C LEU N 104 173.799 143.253 184.995 1.00283.54 ATOM 43 O LEU N 104 173.844 142.901 186.180 1.00283.54 ATOM 44 CB LEU N 104 174.173 141.592 183.151 1.00283.54 ATOM 45 N PHE N 105 174.322 144.407 184.574 1.00286.18 ATOM 46 CA PHE N 105 174.940 145.330 185.520 1.00286.18 ATOM 47 C PHE N 105 173.930 145.814 186.553 1.00286.18 ATOM 48 O PHE N 105 174.252 145.936 187.740 1.00286.18 ATOM 49 CB PHE N 105 175.555 146.512 184.769 1.00286.18 ATOM 50 CG PHE N 105 176.454 147.371 185.614 1.00286.18 ATOM 51 CD1 PHE N 105 177.807 147.093 185.711 1.00286.18 ATOM 52 CD2 PHE N 105 175.948 148.461 186.304 1.00286.18 ATOM 53 CE1 PHE N 105 178.638 147.882 186.484 1.00286.18 ATOM 54 CE2 PHE N 105 176.775 149.253 187.079 1.00286.18 ATOM 55 CZ PHE N 105 178.121 148.962 187.169 1.00286.18 ATOM 56 N CYS N 106 172.697 146.087 186.119 1.00285.16 ATOM 57 CA CYS N 106 171.657 146.516 187.047 1.00285.16 ATOM 58 C CYS N 106 171.320 145.414 188.043 1.00285.16 ATOM 59 O CYS N 106 171.252 145.657 189.254 1.00285.16 ATOM 60 CB CYS N 106 170.411 146.943 186.270 1.00285.16 ATOM 61 SG CYS N 106 168.986 147.343 187.302 1.00285.16 ATOM 62 N SER N 107 171.105 144.192 187.551 1.00289.04 ATOM 63 CA SER N 107 170.784 143.079 188.437 1.00289.04 ATOM 64 C SER N 107 171.937 142.734 189.369 1.00289.04 ATOM 65 O SER N 107 171.708 142.139 190.427 1.00289.04 ATOM 66 CB SER N 107 170.390 141.850 187.616 1.00289.04 ATOM 67 OG SER N 107 171.445 141.447 186.760 1.00289.04 ATOM 68 N GLU N 108 173.168 143.091 189.003 1.00290.52 ATOM 69 CA GLU N 108 174.317 142.806 189.852 1.00290.52 ATOM 70 C GLU N 108 174.602 143.908 190.864 1.00290.52 ATOM 71 O GLU N 108 175.109 143.617 191.954 1.00290.52 ATOM 72 CB GLU N 108 175.562 142.573 188.992 1.00290.52 ATOM 73 N TYR N 109 174.295 145.164 190.538 1.00289.49 ATOM 74 CA TYR N 109 174.624 146.286 191.409 1.00289.49 ATOM 75 C TYR N 109 173.397 146.971 192.000 1.00289.49 ATOM 76 O TYR N 109 173.521 148.068 192.553 1.00289.49 ATOM 77 CB TYR N 109 175.484 147.300 190.652 1.00289.49 ATOM 78 CG TYR N 109 176.887 146.805 190.376 1.00289.49 ATOM 79 CD1 TYR N 109 177.159 146.009 189.271 1.00289.49 ATOM 80 CD2 TYR N 109 177.937 147.129 191.225 1.00289.49 ATOM 81 CE1 TYR N 109 178.439 145.553 189.018 1.00289.49 ATOM 82 CE2 TYR N 109 179.220 146.678 190.979 1.00289.49 ATOM 83 CZ TYR N 109 179.465 145.891 189.874 1.00289.49 ATOM 84 OH TYR N 109 180.741 145.440 189.625 1.00289.49 ATOM 85 N ARG N 110 172.218 146.360 191.892 1.00293.73 ATOM 86 CA ARG N 110 171.066 146.868 192.633 1.00293.73 ATOM 87 C ARG N 110 171.264 146.856 194.147 1.00293.73 ATOM 88 O ARG N 110 170.845 147.830 194.797 1.00293.73 ATOM 89 CB ARG N 110 169.811 146.076 192.242 1.00293.73 ATOM 90 N PRO N 111 171.857 145.827 194.769 1.00300.36 ATOM 91 CA PRO N 111 172.099 145.914 196.220 1.00300.36 ATOM 92 C PRO N 111 173.019 147.055 196.613 1.00300.36 ATOM 93 O PRO N 111 172.935 147.541 197.748 1.00300.36 ATOM 94 CB PRO N 111 172.712 144.546 196.559 1.00300.36 ATOM 95 CG PRO N 111 173.205 144.008 195.261 1.00300.36 ATOM 96 CD PRO N 111 172.226 144.498 194.248 1.00300.36 ATOM 97 N LYS N 112 173.891 147.506 195.709 1.00301.13 ATOM 98 CA LYS N 112 174.719 148.672 196.001 1.00301.13 ATOM 99 C LYS N 112 173.855 149.905 196.239 1.00301.13 ATOM 100 O LYS N 112 173.987 150.584 197.264 1.00301.13 ATOM 101 CB LYS N 112 175.707 148.914 194.859 1.00301.13 ATOM 102 N ILE N 113 172.952 150.204 195.301 1.00301.79 ATOM 103 CA ILE N 113 172.044 151.331 195.481 1.00301.79 ATOM 104 C ILE N 113 171.100 151.083 196.650 1.00301.79 ATOM 105 O ILE N 113 170.663 152.031 197.315 1.00301.79 ATOM 106 CB ILE N 113 171.268 151.607 194.180 1.00301.79 ATOM 107 N LYS N 114 170.772 149.817 196.924 1.00300.69 ATOM 108 CA LYS N 114 169.936 149.496 198.078 1.00300.69 ATOM 109 C LYS N 114 170.610 149.924 199.375 1.00300.69 ATOM 110 O LYS N 114 170.006 150.608 200.210 1.00300.69 ATOM 111 CB LYS N 114 169.630 147.999 198.102 1.00300.69 ATOM 112 N GLY N 115 171.868 149.522 199.561 1.00302.24 ATOM 113 CA GLY N 115 172.603 149.926 200.745 1.00302.24 ATOM 114 C GLY N 115 172.926 151.405 200.770 1.00302.24 ATOM 115 O GLY N 115 173.094 151.989 201.845 1.00302.24 ATOM 116 N GLU N 116 173.019 152.033 199.596 1.00301.21 ATOM 117 CA GLU N 116 173.316 153.461 199.541 1.00301.21 ATOM 118 C GLU N 116 172.111 154.290 199.973 1.00301.21 ATOM 119 O GLU N 116 172.175 155.035 200.958 1.00301.21 ATOM 120 CB GLU N 116 173.765 153.846 198.130 1.00301.21 ATOM 121 CG GLU N 116 174.202 155.295 197.991 1.00301.21 ATOM 122 CD GLU N 116 175.456 155.607 198.786 1.00301.21 ATOM 123 OE1 GLU N 116 176.247 154.677 199.048 1.00301.21 ATOM 124 OE2 GLU N 116 175.649 156.786 199.151 1.00301.21 ATOM 125 N HIS N 117 171.001 154.174 199.247 1.00298.83 ATOM 126 CA HIS N 117 169.797 154.928 199.546 1.00298.83 ATOM 127 C HIS N 117 168.589 154.002 199.577 1.00298.83 ATOM 128 O HIS N 117 168.468 153.120 198.715 1.00298.83 ATOM 129 CB HIS N 117 169.570 156.041 198.508 1.00298.83 ATOM 130 CG HIS N 117 170.516 157.194 198.639 1.00298.83 ATOM 131 ND1 HIS N 117 170.418 158.126 199.649 1.00298.83 ATOM 132 CD2 HIS N 117 171.574 157.569 197.882 1.00298.83 ATOM 133 CE1 HIS N 117 171.377 159.024 199.511 1.00298.83 ATOM 134 NE2 HIS N 117 172.093 158.709 198.447 1.00298.83 ATOM 135 N PRO N 118 167.680 154.162 200.542 1.00292.57 ATOM 136 CA PRO N 118 166.463 153.329 200.530 1.00292.57 ATOM 137 C PRO N 118 165.549 153.635 199.355 1.00292.57 ATOM 138 O PRO N 118 165.108 152.713 198.658 1.00292.57 ATOM 139 CB PRO N 118 165.810 153.655 201.880 1.00292.57 ATOM 140 CG PRO N 118 166.313 155.018 202.225 1.00292.57 ATOM 141 CD PRO N 118 167.715 155.086 201.689 1.00292.57 ATOM 142 N GLY N 119 165.257 154.909 199.113 1.00286.27 ATOM 143 CA GLY N 119 164.403 155.302 198.007 1.00286.27 ATOM 144 C GLY N 119 164.355 156.801 197.785 1.00286.27 ATOM 145 O GLY N 119 163.490 157.305 197.069 1.00286.27 ATOM 146 N ILE N 122 162.468 153.421 192.796 1.00277.94 ATOM 147 CA ILE N 122 163.798 153.921 193.120 1.00277.94 ATOM 148 C ILE N 122 164.272 154.887 192.047 1.00277.94 ATOM 149 O ILE N 122 165.172 154.567 191.274 1.00277.94 ATOM 150 CB ILE N 122 164.802 152.770 193.288 1.00277.94 ATOM 151 N GLY N 123 163.665 156.071 192.007 1.00279.81 ATOM 152 CA GLY N 123 164.014 157.070 191.017 1.00279.81 ATOM 153 C GLY N 123 165.468 157.493 191.069 1.00279.81 ATOM 154 O GLY N 123 166.208 157.308 190.098 1.00279.81 ATOM 155 N ASP N 124 165.888 158.059 192.203 1.00278.16 ATOM 156 CA ASP N 124 167.264 158.527 192.335 1.00278.16 ATOM 157 C ASP N 124 168.261 157.377 192.289 1.00278.16 ATOM 158 O ASP N 124 169.358 157.533 191.740 1.00278.16 ATOM 159 CB ASP N 124 167.427 159.317 193.633 1.00278.16 ATOM 160 N VAL N 125 167.903 156.220 192.852 1.00280.59 ATOM 161 CA VAL N 125 168.807 155.073 192.836 1.00280.59 ATOM 162 C VAL N 125 169.057 154.614 191.404 1.00280.59 ATOM 163 O VAL N 125 170.204 154.403 190.992 1.00280.59 ATOM 164 CB VAL N 125 168.246 153.933 193.705 1.00280.59 ATOM 165 N ALA N 126 167.984 154.456 190.624 1.00281.41 ATOM 166 CA ALA N 126 168.136 154.058 189.229 1.00281.41 ATOM 167 C ALA N 126 168.845 155.130 188.415 1.00281.41 ATOM 168 O ALA N 126 169.616 154.806 187.504 1.00281.41 ATOM 169 CB ALA N 126 166.771 153.742 188.620 1.00281.41 ATOM 170 N LYS N 127 168.608 156.406 188.727 1.00277.22 ATOM 171 CA LYS N 127 169.300 157.480 188.023 1.00277.22 ATOM 172 C LYS N 127 170.803 157.408 188.263 1.00277.22 ATOM 173 O LYS N 127 171.600 157.501 187.321 1.00277.22 ATOM 174 CB LYS N 127 168.743 158.835 188.463 1.00277.22 ATOM 175 CG LYS N 127 169.362 160.027 187.754 1.00277.22 ATOM 176 CD LYS N 127 168.742 161.333 188.227 1.00277.22 ATOM 177 CE LYS N 127 167.243 161.359 187.976 1.00277.22 ATOM 178 NZ LYS N 127 166.918 161.218 186.530 1.00277.22 ATOM 179 N LYS N 128 171.208 157.232 189.523 1.00279.39 ATOM 180 CA LYS N 128 172.628 157.115 189.837 1.00279.39 ATOM 181 C LYS N 128 173.227 155.856 189.221 1.00279.39 ATOM 182 O LYS N 128 174.373 155.868 188.755 1.00279.39 ATOM 183 CB LYS N 128 172.833 157.122 191.351 1.00279.39 ATOM 184 N LEU N 129 172.463 154.760 189.206 1.00279.22 ATOM 185 CA LEU N 129 172.935 153.528 188.582 1.00279.22 ATOM 186 C LEU N 129 173.200 153.733 187.096 1.00279.22 ATOM 187 O LEU N 129 174.263 153.361 186.585 1.00279.22 ATOM 188 CB LEU N 129 171.914 152.412 188.798 1.00279.22 ATOM 189 CG LEU N 129 172.005 151.193 187.877 1.00279.22 ATOM 190 CD1 LEU N 129 173.283 150.407 188.119 1.00279.22 ATOM 191 CD2 LEU N 129 170.785 150.309 188.058 1.00279.22 ATOM 192 N GLY N 130 172.238 154.324 186.385 1.00276.10 ATOM 193 CA GLY N 130 172.433 154.586 184.969 1.00276.10 ATOM 194 C GLY N 130 173.573 155.552 184.708 1.00276.10 ATOM 195 O GLY N 130 174.333 155.385 183.751 1.00276.10 ATOM 196 N GLU N 131 173.719 156.564 185.567 1.00279.09 ATOM 197 CA GLU N 131 174.806 157.524 185.405 1.00279.09 ATOM 198 C GLU N 131 176.162 156.846 185.553 1.00279.09 ATOM 199 O GLU N 131 177.054 157.027 184.715 1.00279.09 ATOM 200 CB GLU N 131 174.655 158.660 186.418 1.00279.09 ATOM 201 N MET N 132 176.336 156.050 186.611 1.00279.14 ATOM 202 CA MET N 132 177.625 155.400 186.819 1.00279.14 ATOM 203 C MET N 132 177.876 154.303 185.790 1.00279.14 ATOM 204 O MET N 132 179.035 154.024 185.462 1.00279.14 ATOM 205 CB MET N 132 177.724 154.843 188.241 1.00279.14 ATOM 206 CG MET N 132 176.783 153.695 188.561 1.00279.14 ATOM 207 SD MET N 132 177.000 153.122 190.259 1.00279.14 ATOM 208 CE MET N 132 175.792 151.805 190.344 1.00279.14 ATOM 209 N TRP N 133 176.818 153.690 185.252 1.00273.65 ATOM 210 CA TRP N 133 177.011 152.700 184.198 1.00273.65 ATOM 211 C TRP N 133 177.436 153.361 182.893 1.00273.65 ATOM 212 O TRP N 133 178.304 152.841 182.183 1.00273.65 ATOM 213 CB TRP N 133 175.735 151.883 183.996 1.00273.65 ATOM 214 CG TRP N 133 175.870 150.840 182.929 1.00273.65 ATOM 215 CD1 TRP N 133 176.425 149.601 183.061 1.00273.65 ATOM 216 CD2 TRP N 133 175.446 150.947 181.565 1.00273.65 ATOM 217 NE1 TRP N 133 176.372 148.929 181.864 1.00273.65 ATOM 218 CE2 TRP N 133 175.775 149.733 180.930 1.00273.65 ATOM 219 CE3 TRP N 133 174.818 151.949 180.820 1.00273.65 ATOM 220 CZ2 TRP N 133 175.498 149.495 179.585 1.00273.65 ATOM 221 CZ3 TRP N 133 174.545 151.711 179.485 1.00273.65 ATOM 222 CH2 TRP N 133 174.884 150.494 178.881 1.00273.65 ATOM 223 N ASN N 134 176.831 154.504 182.557 1.00273.61 ATOM 224 CA ASN N 134 177.273 155.251 181.385 1.00273.61 ATOM 225 C ASN N 134 178.682 155.798 181.572 1.00273.61 ATOM 226 O ASN N 134 179.432 155.922 180.597 1.00273.61 ATOM 227 CB ASN N 134 176.297 156.388 181.086 1.00273.61 ATOM 228 CG ASN N 134 174.926 155.888 180.679 1.00273.61 ATOM 229 OD1 ASN N 134 174.804 154.936 179.908 1.00273.61 ATOM 230 ND2 ASN N 134 173.884 156.527 181.198 1.00273.61 ATOM 231 N ASN N 135 179.057 156.128 182.809 1.00275.89 ATOM 232 CA ASN N 135 180.411 156.606 183.070 1.00275.89 ATOM 233 C ASN N 135 181.430 155.484 182.908 1.00275.89 ATOM 234 O ASN N 135 182.461 155.659 182.248 1.00275.89 ATOM 235 CB ASN N 135 180.492 157.213 184.471 1.00275.89 ATOM 236 N THR N 136 181.160 154.325 183.502 1.00270.36 ATOM 237 CA THR N 136 182.074 153.193 183.409 1.00270.36 ATOM 238 C THR N 136 181.976 152.527 182.040 1.00270.36 ATOM 239 O THR N 136 181.080 152.833 181.254 1.00270.36 ATOM 240 CB THR N 136 181.794 152.142 184.501 1.00270.36 ATOM 241 OG1 THR N 136 182.870 151.197 184.542 1.00270.36 ATOM 242 CG2 THR N 136 180.499 151.404 184.209 1.00270.36 TER