HEADER RECOMBINATION/DNA 31-DEC-69 6OEN TITLE Cryo-EM structure of mouse RAG1/2 PRC complex (DNA1) COMPND MOL_ID: 7; COMPND 2 MOLECULE: High mobility group protein B1; COMPND 3 CHAIN: N, H; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU N 120 REMARK 465 SER N 121 DBREF 6OEN N 1 163 UNP P09429 HMGB1_HUMAN 1 163 SEQRES 1 N 38 PRO SER ALA PHE PHE LEU PHE CYS SER GLU TYR ARG PRO SEQRES 2 N 38 LYS ILE LYS GLY GLU HIS PRO GLY LEU SER ILE GLY ASP SEQRES 3 N 38 VAL ALA LYS LYS LEU GLY GLU MET TRP ASN ASN THR ATOM 1 N PRO N 99 129.078 120.987 112.718 1.00290.27 ATOM 2 CA PRO N 99 128.014 120.324 111.952 1.00290.27 ATOM 3 C PRO N 99 126.840 119.900 112.819 1.00290.27 ATOM 4 O PRO N 99 127.014 119.589 113.994 1.00290.27 ATOM 5 CB PRO N 99 128.726 119.103 111.361 1.00290.27 ATOM 6 CG PRO N 99 129.853 118.836 112.284 1.00290.27 ATOM 7 CD PRO N 99 130.301 120.174 112.788 1.00290.27 ATOM 8 N SER N 100 125.642 119.893 112.233 1.00313.56 ATOM 9 CA SER N 100 124.421 119.526 112.931 1.00313.56 ATOM 10 C SER N 100 123.764 118.361 112.203 1.00313.56 ATOM 11 O SER N 100 124.083 118.061 111.050 1.00313.56 ATOM 12 CB SER N 100 123.465 120.723 113.030 1.00313.56 ATOM 13 N ALA N 101 122.820 117.700 112.880 1.00327.36 ATOM 14 CA ALA N 101 122.088 116.607 112.243 1.00327.36 ATOM 15 C ALA N 101 121.111 117.137 111.201 1.00327.36 ATOM 16 O ALA N 101 120.923 116.524 110.144 1.00327.36 ATOM 17 CB ALA N 101 121.358 115.775 113.298 1.00327.36 ATOM 18 N PHE N 102 120.493 118.288 111.475 1.00320.47 ATOM 19 CA PHE N 102 119.678 118.954 110.464 1.00320.47 ATOM 20 C PHE N 102 120.543 119.449 109.313 1.00320.47 ATOM 21 O PHE N 102 120.118 119.434 108.153 1.00320.47 ATOM 22 CB PHE N 102 118.905 120.105 111.108 1.00320.47 ATOM 23 CG PHE N 102 118.507 121.189 110.153 1.00320.47 ATOM 24 CD1 PHE N 102 117.520 120.972 109.202 1.00320.47 ATOM 25 CD2 PHE N 102 119.110 122.435 110.219 1.00320.47 ATOM 26 CE1 PHE N 102 117.155 121.970 108.325 1.00320.47 ATOM 27 CE2 PHE N 102 118.748 123.439 109.348 1.00320.47 ATOM 28 CZ PHE N 102 117.769 123.207 108.399 1.00320.47 ATOM 29 N PHE N 103 121.772 119.872 109.618 1.00322.67 ATOM 30 CA PHE N 103 122.715 120.255 108.574 1.00322.67 ATOM 31 C PHE N 103 123.096 119.058 107.707 1.00322.67 ATOM 32 O PHE N 103 123.242 119.186 106.487 1.00322.67 ATOM 33 CB PHE N 103 123.948 120.894 109.219 1.00322.67 ATOM 34 CG PHE N 103 125.205 120.753 108.413 1.00322.67 ATOM 35 CD1 PHE N 103 125.406 121.528 107.281 1.00322.67 ATOM 36 CD2 PHE N 103 126.198 119.858 108.795 1.00322.67 ATOM 37 CE1 PHE N 103 126.561 121.402 106.536 1.00322.67 ATOM 38 CE2 PHE N 103 127.360 119.728 108.050 1.00322.67 ATOM 39 CZ PHE N 103 127.542 120.504 106.922 1.00322.67 ATOM 40 N LEU N 104 123.243 117.880 108.320 1.00339.60 ATOM 41 CA LEU N 104 123.542 116.670 107.558 1.00339.60 ATOM 42 C LEU N 104 122.340 116.229 106.731 1.00339.60 ATOM 43 O LEU N 104 122.500 115.705 105.622 1.00339.60 ATOM 44 CB LEU N 104 123.986 115.552 108.500 1.00339.60 ATOM 45 N PHE N 105 121.131 116.438 107.259 1.00345.41 ATOM 46 CA PHE N 105 119.911 116.209 106.489 1.00345.41 ATOM 47 C PHE N 105 119.845 117.135 105.279 1.00345.41 ATOM 48 O PHE N 105 119.449 116.718 104.183 1.00345.41 ATOM 49 CB PHE N 105 118.696 116.416 107.395 1.00345.41 ATOM 50 CG PHE N 105 117.459 115.675 106.959 1.00345.41 ATOM 51 CD1 PHE N 105 116.579 116.242 106.048 1.00345.41 ATOM 52 CD2 PHE N 105 117.156 114.431 107.494 1.00345.41 ATOM 53 CE1 PHE N 105 115.433 115.571 105.659 1.00345.41 ATOM 54 CE2 PHE N 105 116.011 113.756 107.110 1.00345.41 ATOM 55 CZ PHE N 105 115.150 114.327 106.191 1.00345.41 ATOM 56 N CYS N 106 120.251 118.392 105.465 1.00346.82 ATOM 57 CA CYS N 106 120.310 119.344 104.360 1.00346.82 ATOM 58 C CYS N 106 121.357 118.932 103.334 1.00346.82 ATOM 59 O CYS N 106 121.130 119.035 102.125 1.00346.82 ATOM 60 CB CYS N 106 120.607 120.742 104.900 1.00346.82 ATOM 61 SG CYS N 106 121.152 121.927 103.653 1.00346.82 ATOM 62 N SER N 107 122.511 118.450 103.802 1.00350.01 ATOM 63 CA SER N 107 123.559 117.988 102.899 1.00350.01 ATOM 64 C SER N 107 123.163 116.723 102.150 1.00350.01 ATOM 65 O SER N 107 123.650 116.496 101.038 1.00350.01 ATOM 66 CB SER N 107 124.853 117.742 103.675 1.00350.01 ATOM 67 OG SER N 107 124.900 116.418 104.178 1.00350.01 ATOM 68 N GLU N 108 122.295 115.899 102.733 1.00351.21 ATOM 69 CA GLU N 108 121.785 114.721 102.044 1.00351.21 ATOM 70 C GLU N 108 120.673 115.048 101.057 1.00351.21 ATOM 71 O GLU N 108 120.570 114.388 100.017 1.00351.21 ATOM 72 CB GLU N 108 121.277 113.692 103.059 1.00351.21 ATOM 73 N TYR N 109 119.840 116.049 101.347 1.00356.16 ATOM 74 CA TYR N 109 118.668 116.328 100.526 1.00356.16 ATOM 75 C TYR N 109 118.788 117.607 99.703 1.00356.16 ATOM 76 O TYR N 109 117.795 118.038 99.106 1.00356.16 ATOM 77 CB TYR N 109 117.417 116.392 101.405 1.00356.16 ATOM 78 CG TYR N 109 116.945 115.037 101.879 1.00356.16 ATOM 79 CD1 TYR N 109 117.506 114.438 103.003 1.00356.16 ATOM 80 CD2 TYR N 109 115.943 114.354 101.201 1.00356.16 ATOM 81 CE1 TYR N 109 117.082 113.197 103.440 1.00356.16 ATOM 82 CE2 TYR N 109 115.509 113.109 101.632 1.00356.16 ATOM 83 CZ TYR N 109 116.083 112.537 102.752 1.00356.16 ATOM 84 OH TYR N 109 115.657 111.302 103.183 1.00356.16 ATOM 85 N ARG N 110 119.969 118.222 99.653 1.00361.62 ATOM 86 CA ARG N 110 120.130 119.436 98.855 1.00361.62 ATOM 87 C ARG N 110 120.107 119.221 97.337 1.00361.62 ATOM 88 O ARG N 110 119.555 120.095 96.644 1.00361.62 ATOM 89 CB ARG N 110 121.406 120.172 99.295 1.00361.62 ATOM 90 N PRO N 111 120.677 118.149 96.748 1.00362.39 ATOM 91 CA PRO N 111 120.378 117.893 95.325 1.00362.39 ATOM 92 C PRO N 111 118.913 117.596 95.056 1.00362.39 ATOM 93 O PRO N 111 118.409 117.951 93.983 1.00362.39 ATOM 94 CB PRO N 111 121.271 116.690 94.982 1.00362.39 ATOM 95 CG PRO N 111 121.695 116.128 96.286 1.00362.39 ATOM 96 CD PRO N 111 121.817 117.310 97.170 1.00362.39 ATOM 97 N LYS N 112 118.211 116.981 96.012 1.00368.30 ATOM 98 CA LYS N 112 116.770 116.798 95.880 1.00368.30 ATOM 99 C LYS N 112 116.046 118.140 95.898 1.00368.30 ATOM 100 O LYS N 112 115.076 118.345 95.157 1.00368.30 ATOM 101 CB LYS N 112 116.255 115.888 96.996 1.00368.30 ATOM 102 N ILE N 113 116.532 119.080 96.715 1.00369.24 ATOM 103 CA ILE N 113 115.940 120.415 96.763 1.00369.24 ATOM 104 C ILE N 113 116.211 121.180 95.473 1.00369.24 ATOM 105 O ILE N 113 115.342 121.918 94.989 1.00369.24 ATOM 106 CB ILE N 113 116.460 121.188 97.990 1.00369.24 ATOM 107 N LYS N 114 117.400 121.004 94.887 1.00366.87 ATOM 108 CA LYS N 114 117.720 121.659 93.621 1.00366.87 ATOM 109 C LYS N 114 116.912 121.068 92.472 1.00366.87 ATOM 110 O LYS N 114 116.523 121.780 91.538 1.00366.87 ATOM 111 CB LYS N 114 119.217 121.543 93.335 1.00366.87 ATOM 112 N GLY N 115 116.654 119.758 92.521 1.00370.99 ATOM 113 CA GLY N 115 115.848 119.130 91.488 1.00370.99 ATOM 114 C GLY N 115 114.372 119.459 91.588 1.00370.99 ATOM 115 O GLY N 115 113.688 119.569 90.565 1.00370.99 ATOM 116 N GLU N 116 113.855 119.610 92.810 1.00364.41 ATOM 117 CA GLU N 116 112.460 120.006 92.973 1.00364.41 ATOM 118 C GLU N 116 112.268 121.473 92.607 1.00364.41 ATOM 119 O GLU N 116 111.313 121.830 91.908 1.00364.41 ATOM 120 CB GLU N 116 111.998 119.730 94.408 1.00364.41 ATOM 121 CG GLU N 116 110.756 120.503 94.857 1.00364.41 ATOM 122 CD GLU N 116 109.521 120.201 94.022 1.00364.41 ATOM 123 OE1 GLU N 116 109.268 119.015 93.729 1.00364.41 ATOM 124 OE2 GLU N 116 108.802 121.155 93.659 1.00364.41 ATOM 125 N HIS N 117 113.175 122.340 93.055 1.00362.83 ATOM 126 CA HIS N 117 113.008 123.751 92.761 1.00362.83 ATOM 127 C HIS N 117 114.352 124.415 92.498 1.00362.83 ATOM 128 O HIS N 117 115.354 124.071 93.136 1.00362.83 ATOM 129 CB HIS N 117 112.292 124.464 93.916 1.00362.83 ATOM 130 CG HIS N 117 110.808 124.281 93.904 1.00362.83 ATOM 131 ND1 HIS N 117 110.047 124.462 92.770 1.00362.83 ATOM 132 CD2 HIS N 117 109.944 123.927 94.885 1.00362.83 ATOM 133 CE1 HIS N 117 108.777 124.231 93.053 1.00362.83 ATOM 134 NE2 HIS N 117 108.688 123.902 94.329 1.00362.83 ATOM 135 N PRO N 118 114.410 125.356 91.543 1.00359.34 ATOM 136 CA PRO N 118 115.649 126.121 91.338 1.00359.34 ATOM 137 C PRO N 118 115.962 127.045 92.506 1.00359.34 ATOM 138 O PRO N 118 117.065 126.998 93.058 1.00359.34 ATOM 139 CB PRO N 118 115.375 126.907 90.047 1.00359.34 ATOM 140 CG PRO N 118 113.889 126.904 89.882 1.00359.34 ATOM 141 CD PRO N 118 113.383 125.656 90.529 1.00359.34 ATOM 142 N GLY N 119 114.993 127.863 92.909 1.00344.23 ATOM 143 CA GLY N 119 115.173 128.779 94.020 1.00344.23 ATOM 144 C GLY N 119 113.875 129.124 94.723 1.00344.23 ATOM 145 O GLY N 119 113.334 130.215 94.547 1.00344.23 ATOM 146 N ILE N 122 117.701 130.998 98.629 1.00315.75 ATOM 147 CA ILE N 122 116.815 129.894 98.280 1.00315.75 ATOM 148 C ILE N 122 115.736 129.733 99.340 1.00315.75 ATOM 149 O ILE N 122 115.728 128.745 100.085 1.00315.75 ATOM 150 CB ILE N 122 117.598 128.588 98.101 1.00315.75 ATOM 151 N GLY N 123 114.824 130.705 99.382 1.00320.93 ATOM 152 CA GLY N 123 113.791 130.789 100.397 1.00320.93 ATOM 153 C GLY N 123 112.831 129.618 100.455 1.00320.93 ATOM 154 O GLY N 123 112.707 128.982 101.504 1.00320.93 ATOM 155 N ASP N 124 112.175 129.306 99.332 1.00317.85 ATOM 156 CA ASP N 124 111.181 128.234 99.316 1.00317.85 ATOM 157 C ASP N 124 111.825 126.864 99.490 1.00317.85 ATOM 158 O ASP N 124 111.283 126.008 100.200 1.00317.85 ATOM 159 CB ASP N 124 110.381 128.282 98.017 1.00317.85 ATOM 160 N VAL N 125 112.993 126.654 98.874 1.00320.41 ATOM 161 CA VAL N 125 113.677 125.364 98.957 1.00320.41 ATOM 162 C VAL N 125 114.165 125.104 100.378 1.00320.41 ATOM 163 O VAL N 125 113.940 124.025 100.939 1.00320.41 ATOM 164 CB VAL N 125 114.833 125.303 97.944 1.00320.41 ATOM 165 N ALA N 126 114.807 126.103 100.996 1.00321.20 ATOM 166 CA ALA N 126 115.286 125.932 102.366 1.00321.20 ATOM 167 C ALA N 126 114.140 125.887 103.372 1.00321.20 ATOM 168 O ALA N 126 114.237 125.180 104.382 1.00321.20 ATOM 169 CB ALA N 126 116.263 127.050 102.726 1.00321.20 ATOM 170 N LYS N 127 113.040 126.598 103.099 1.00317.41 ATOM 171 CA LYS N 127 111.884 126.573 103.988 1.00317.41 ATOM 172 C LYS N 127 111.211 125.207 103.976 1.00317.41 ATOM 173 O LYS N 127 110.909 124.642 105.033 1.00317.41 ATOM 174 CB LYS N 127 110.902 127.669 103.570 1.00317.41 ATOM 175 CG LYS N 127 109.507 127.552 104.162 1.00317.41 ATOM 176 CD LYS N 127 108.544 128.532 103.500 1.00317.41 ATOM 177 CE LYS N 127 109.030 129.967 103.623 1.00317.41 ATOM 178 NZ LYS N 127 109.370 130.324 105.028 1.00317.41 ATOM 179 N LYS N 128 110.993 124.648 102.782 1.00329.44 ATOM 180 CA LYS N 128 110.402 123.318 102.691 1.00329.44 ATOM 181 C LYS N 128 111.368 122.248 103.181 1.00329.44 ATOM 182 O LYS N 128 110.936 121.212 103.694 1.00329.44 ATOM 183 CB LYS N 128 109.967 123.033 101.254 1.00329.44 ATOM 184 N LEU N 129 112.676 122.496 103.065 1.00333.75 ATOM 185 CA LEU N 129 113.665 121.564 103.595 1.00333.75 ATOM 186 C LEU N 129 113.633 121.535 105.120 1.00333.75 ATOM 187 O LEU N 129 113.670 120.459 105.734 1.00333.75 ATOM 188 CB LEU N 129 115.051 121.949 103.081 1.00333.75 ATOM 189 CG LEU N 129 116.270 121.501 103.885 1.00333.75 ATOM 190 CD1 LEU N 129 116.546 120.018 103.685 1.00333.75 ATOM 191 CD2 LEU N 129 117.474 122.337 103.496 1.00333.75 ATOM 192 N GLY N 130 113.550 122.712 105.747 1.00336.51 ATOM 193 CA GLY N 130 113.386 122.763 107.192 1.00336.51 ATOM 194 C GLY N 130 112.061 122.181 107.644 1.00336.51 ATOM 195 O GLY N 130 111.985 121.522 108.687 1.00336.51 ATOM 196 N GLU N 131 111.011 122.375 106.837 1.00340.10 ATOM 197 CA GLU N 131 109.699 121.812 107.143 1.00340.10 ATOM 198 C GLU N 131 109.721 120.289 107.092 1.00340.10 ATOM 199 O GLU N 131 109.177 119.620 107.976 1.00340.10 ATOM 200 CB GLU N 131 108.657 122.366 106.172 1.00340.10 ATOM 201 N MET N 132 110.379 119.719 106.082 1.00341.82 ATOM 202 CA MET N 132 110.402 118.265 105.983 1.00341.82 ATOM 203 C MET N 132 111.374 117.644 106.982 1.00341.82 ATOM 204 O MET N 132 111.155 116.506 107.418 1.00341.82 ATOM 205 CB MET N 132 110.710 117.827 104.545 1.00341.82 ATOM 206 CG MET N 132 112.096 118.154 104.004 1.00341.82 ATOM 207 SD MET N 132 112.049 118.467 102.221 1.00341.82 ATOM 208 CE MET N 132 113.770 118.278 101.763 1.00341.82 ATOM 209 N TRP N 133 112.422 118.370 107.398 1.00336.48 ATOM 210 CA TRP N 133 113.254 117.833 108.472 1.00336.48 ATOM 211 C TRP N 133 112.528 117.883 109.811 1.00336.48 ATOM 212 O TRP N 133 112.677 116.973 110.635 1.00336.48 ATOM 213 CB TRP N 133 114.591 118.562 108.581 1.00336.48 ATOM 214 CG TRP N 133 115.410 117.977 109.711 1.00336.48 ATOM 215 CD1 TRP N 133 116.021 116.755 109.732 1.00336.48 ATOM 216 CD2 TRP N 133 115.632 118.553 111.003 1.00336.48 ATOM 217 NE1 TRP N 133 116.639 116.551 110.940 1.00336.48 ATOM 218 CE2 TRP N 133 116.414 117.639 111.740 1.00336.48 ATOM 219 CE3 TRP N 133 115.259 119.759 111.602 1.00336.48 ATOM 220 CZ2 TRP N 133 116.829 117.897 113.045 1.00336.48 ATOM 221 CZ3 TRP N 133 115.673 120.012 112.891 1.00336.48 ATOM 222 CH2 TRP N 133 116.450 119.087 113.601 1.00336.48 ATOM 223 N ASN N 134 111.732 118.930 110.049 1.00342.77 ATOM 224 CA ASN N 134 110.907 118.939 111.253 1.00342.77 ATOM 225 C ASN N 134 109.795 117.899 111.174 1.00342.77 ATOM 226 O ASN N 134 109.319 117.424 112.211 1.00342.77 ATOM 227 CB ASN N 134 110.324 120.332 111.490 1.00342.77 ATOM 228 CG ASN N 134 111.253 121.220 112.299 1.00342.77 ATOM 229 OD1 ASN N 134 112.447 121.312 112.014 1.00342.77 ATOM 230 ND2 ASN N 134 110.707 121.876 113.317 1.00342.77 ATOM 231 N ASN N 135 109.377 117.532 109.959 1.00338.14 ATOM 232 CA ASN N 135 108.444 116.423 109.793 1.00338.14 ATOM 233 C ASN N 135 109.108 115.095 110.136 1.00338.14 ATOM 234 O ASN N 135 108.477 114.206 110.719 1.00338.14 ATOM 235 CB ASN N 135 107.904 116.402 108.364 1.00338.14 ATOM 236 N THR N 136 110.379 114.940 109.781 1.00335.34 ATOM 237 CA THR N 136 111.112 113.730 110.140 1.00335.34 ATOM 238 C THR N 136 112.087 113.983 111.287 1.00335.34 ATOM 239 O THR N 136 111.766 114.684 112.247 1.00335.34 ATOM 240 CB THR N 136 111.888 113.160 108.941 1.00335.34 ATOM 241 OG1 THR N 136 113.082 113.925 108.733 1.00335.34 ATOM 242 CG2 THR N 136 111.033 113.198 107.686 1.00335.34 TER