HEADER TRANSPORT PROTEIN 31-DEC-69 6OO2 TITLE Vps4 with Cyclic Peptide Bound in the Central Pore COMPND MOL_ID: 1; COMPND 2 MOLECULE: Vacuolar protein sorting-associated protein 4; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 6OO2 D 101 437 UNP P52917 VPS4_YEAST 101 437 SEQRES 1 D 188 ASN LYS LYS LEU ARG GLY ALA LEU SER SER ALA ILE LEU SEQRES 2 D 188 SER GLU LYS PRO ASN VAL LYS TRP GLU ASP VAL ALA GLY SEQRES 3 D 188 LEU GLU GLY ALA LYS GLU ALA LEU LYS GLU ALA VAL ILE SEQRES 4 D 188 LEU PRO VAL LYS PHE PRO HIS LEU PHE LYS GLY ASN ARG SEQRES 5 D 188 LYS PRO THR SER GLY ILE LEU LEU TYR GLY PRO PRO GLY SEQRES 6 D 188 THR GLY LYS SER TYR LEU ALA LYS ALA VAL ALA THR GLU SEQRES 7 D 188 ALA ASN SER THR PHE PHE SER VAL SER SER SER ASP LEU SEQRES 8 D 188 VAL SER LYS TRP MET GLY GLU SER GLU LYS LEU VAL LYS SEQRES 9 D 188 GLN LEU PHE ALA MET ALA ARG GLU ASN LYS PRO SER ILE SEQRES 10 D 188 ILE PHE ILE ASP GLU VAL ASP ALA LEU THR GLY THR ARG SEQRES 11 D 188 GLY GLU GLY GLU SER GLU ALA SER ARG ARG ILE LYS THR SEQRES 12 D 188 GLU LEU LEU VAL GLN MET ASN GLY VAL GLY ASN ASP SER SEQRES 13 D 188 GLN GLY VAL LEU VAL LEU GLY ALA THR ASN ILE PRO TRP SEQRES 14 D 188 GLN LEU ASP SER ALA ILE ARG ARG ARG PHE GLU ARG ARG SEQRES 15 D 188 ILE TYR ILE PRO LEU PRO SEQRES 1 D 24 ARG PRO THR VAL ASN GLU ASP ASP LEU LEU LYS GLN GLU SEQRES 2 D 24 GLN PHE THR ARG ASP PHE GLY GLN GLU GLY ASN ATOM 1 N ARG D 414 145.547 153.141 101.711 1.00113.12 ATOM 2 CA ARG D 414 146.609 152.228 102.100 1.00113.12 ATOM 3 C ARG D 414 146.030 150.883 102.529 1.00113.12 ATOM 4 O ARG D 414 144.887 150.808 102.990 1.00113.12 ATOM 5 CB ARG D 414 147.422 152.841 103.240 1.00113.12 ATOM 6 CG ARG D 414 147.693 154.326 103.060 1.00113.12 ATOM 7 CD ARG D 414 149.176 154.611 102.903 1.00113.12 ATOM 8 NE ARG D 414 149.430 156.024 102.639 1.00113.12 ATOM 9 CZ ARG D 414 150.642 156.557 102.519 1.00113.12 ATOM 10 NH1 ARG D 414 151.718 155.791 102.640 1.00113.12 ATOM 11 NH2 ARG D 414 150.779 157.853 102.279 1.00113.12 ATOM 12 N PRO D 415 146.786 149.794 102.377 1.00104.35 ATOM 13 CA PRO D 415 146.305 148.490 102.852 1.00104.35 ATOM 14 C PRO D 415 146.287 148.410 104.371 1.00104.35 ATOM 15 O PRO D 415 146.908 149.208 105.076 1.00104.35 ATOM 16 CB PRO D 415 147.312 147.495 102.261 1.00104.35 ATOM 17 CG PRO D 415 147.979 148.227 101.150 1.00104.35 ATOM 18 CD PRO D 415 148.018 149.657 101.579 1.00104.35 ATOM 19 N THR D 416 145.555 147.412 104.873 1.00 96.67 ATOM 20 CA THR D 416 145.354 147.243 106.305 1.00 96.67 ATOM 21 C THR D 416 145.969 145.973 106.874 1.00 96.67 ATOM 22 O THR D 416 146.114 145.875 108.096 1.00 96.67 ATOM 23 CB THR D 416 143.855 147.245 106.639 1.00 96.67 ATOM 24 OG1 THR D 416 143.215 146.147 105.977 1.00 96.67 ATOM 25 CG2 THR D 416 143.207 148.546 106.191 1.00 96.67 ATOM 26 N VAL D 417 146.329 145.012 106.037 1.00 88.05 ATOM 27 CA VAL D 417 146.848 143.728 106.497 1.00 88.05 ATOM 28 C VAL D 417 148.362 143.821 106.642 1.00 88.05 ATOM 29 O VAL D 417 149.064 144.322 105.758 1.00 88.05 ATOM 30 CB VAL D 417 146.436 142.600 105.528 1.00 88.05 ATOM 31 CG1 VAL D 417 146.866 141.241 106.057 1.00 88.05 ATOM 32 CG2 VAL D 417 144.936 142.632 105.287 1.00 88.05 ATOM 33 N ASN D 418 148.872 143.335 107.772 1.00 90.03 ATOM 34 CA ASN D 418 150.300 143.292 108.039 1.00 90.03 ATOM 35 C ASN D 418 150.892 142.002 107.470 1.00 90.03 ATOM 36 O ASN D 418 150.244 141.274 106.712 1.00 90.03 ATOM 37 CB ASN D 418 150.557 143.440 109.541 1.00 90.03 ATOM 38 CG ASN D 418 149.765 142.450 110.369 1.00 90.03 ATOM 39 OD1 ASN D 418 148.589 142.664 110.655 1.00 90.03 ATOM 40 ND2 ASN D 418 150.411 141.359 110.761 1.00 90.03 ATOM 41 N GLU D 419 152.142 141.706 107.837 1.00 92.23 ATOM 42 CA GLU D 419 152.884 140.623 107.207 1.00 92.23 ATOM 43 C GLU D 419 153.362 139.534 108.161 1.00 92.23 ATOM 44 O GLU D 419 154.056 138.613 107.715 1.00 92.23 ATOM 45 CB GLU D 419 154.094 141.188 106.446 1.00 92.23 ATOM 46 CG GLU D 419 153.723 142.061 105.254 1.00 92.23 ATOM 47 CD GLU D 419 153.670 143.539 105.596 1.00 92.23 ATOM 48 OE1 GLU D 419 153.797 144.367 104.669 1.00 92.23 ATOM 49 OE2 GLU D 419 153.503 143.875 106.787 1.00 92.23 ATOM 50 N ASP D 420 153.024 139.605 109.446 1.00 87.83 ATOM 51 CA ASP D 420 153.362 138.555 110.403 1.00 87.83 ATOM 52 C ASP D 420 152.164 137.709 110.803 1.00 87.83 ATOM 53 O ASP D 420 152.309 136.499 111.039 1.00 87.83 ATOM 54 CB ASP D 420 153.991 139.165 111.660 1.00 87.83 ATOM 55 CG ASP D 420 155.504 139.078 111.654 1.00 87.83 ATOM 56 OD1 ASP D 420 156.063 138.502 110.696 1.00 87.83 ATOM 57 OD2 ASP D 420 156.134 139.586 112.605 1.00 87.83 ATOM 58 N ASP D 421 150.977 138.320 110.869 1.00 82.56 ATOM 59 CA ASP D 421 149.764 137.551 111.110 1.00 82.56 ATOM 60 C ASP D 421 149.448 136.639 109.934 1.00 82.56 ATOM 61 O ASP D 421 148.833 135.588 110.121 1.00 82.56 ATOM 62 CB ASP D 421 148.588 138.487 111.409 1.00 82.56 ATOM 63 CG ASP D 421 148.034 139.157 110.164 1.00 82.56 ATOM 64 OD1 ASP D 421 148.834 139.631 109.329 1.00 82.56 ATOM 65 OD2 ASP D 421 146.795 139.208 110.022 1.00 82.56 ATOM 66 N LEU D 422 149.886 137.006 108.725 1.00 75.27 ATOM 67 CA LEU D 422 149.801 136.095 107.589 1.00 75.27 ATOM 68 C LEU D 422 150.684 134.870 107.788 1.00 75.27 ATOM 69 O LEU D 422 150.286 133.758 107.421 1.00 75.27 ATOM 70 CB LEU D 422 150.190 136.821 106.303 1.00 75.27 ATOM 71 CG LEU D 422 149.276 137.946 105.815 1.00 75.27 ATOM 72 CD1 LEU D 422 149.597 138.290 104.371 1.00 75.27 ATOM 73 CD2 LEU D 422 147.812 137.568 105.960 1.00 75.27 ATOM 74 N LEU D 423 151.863 135.049 108.390 1.00 69.34 ATOM 75 CA LEU D 423 152.723 133.912 108.702 1.00 69.34 ATOM 76 C LEU D 423 152.105 133.037 109.787 1.00 69.34 ATOM 77 O LEU D 423 152.202 131.804 109.728 1.00 69.34 ATOM 78 CB LEU D 423 154.108 134.402 109.125 1.00 69.34 ATOM 79 CG LEU D 423 155.146 133.341 109.499 1.00 69.34 ATOM 80 CD1 LEU D 423 155.370 132.378 108.345 1.00 69.34 ATOM 81 CD2 LEU D 423 156.453 133.993 109.921 1.00 69.34 ATOM 82 N LYS D 424 151.438 133.655 110.768 1.00 62.10 ATOM 83 CA LYS D 424 150.754 132.871 111.797 1.00 62.10 ATOM 84 C LYS D 424 149.559 132.111 111.223 1.00 62.10 ATOM 85 O LYS D 424 149.298 130.964 111.610 1.00 62.10 ATOM 86 CB LYS D 424 150.315 133.781 112.943 1.00 62.10 ATOM 87 CG LYS D 424 149.868 133.034 114.187 1.00 62.10 ATOM 88 CD LYS D 424 151.008 132.237 114.795 1.00 62.10 ATOM 89 CE LYS D 424 152.050 133.156 115.407 1.00 62.10 ATOM 90 NZ LYS D 424 151.518 133.868 116.601 1.00 62.10 ATOM 91 N GLN D 425 148.837 132.729 110.281 1.00 55.47 ATOM 92 CA GLN D 425 147.727 132.055 109.615 1.00 55.47 ATOM 93 C GLN D 425 148.217 130.906 108.744 1.00 55.47 ATOM 94 O GLN D 425 147.573 129.854 108.677 1.00 55.47 ATOM 95 CB GLN D 425 146.931 133.056 108.774 1.00 55.47 ATOM 96 CG GLN D 425 146.065 134.015 109.575 1.00 55.47 ATOM 97 CD GLN D 425 144.717 133.437 109.918 1.00 55.47 ATOM 98 OE1 GLN D 425 144.301 132.432 109.348 1.00 55.47 ATOM 99 NE2 GLN D 425 144.021 134.071 110.853 1.00 55.47 ATOM 100 N GLU D 426 149.366 131.083 108.081 1.00 61.74 ATOM 101 CA GLU D 426 149.956 129.996 107.306 1.00 61.74 ATOM 102 C GLU D 426 150.441 128.864 108.201 1.00 61.74 ATOM 103 O GLU D 426 150.339 127.691 107.822 1.00 61.74 ATOM 104 CB GLU D 426 151.108 130.524 106.452 1.00 61.74 ATOM 105 CG GLU D 426 150.668 131.293 105.218 1.00 61.74 ATOM 106 CD GLU D 426 151.686 132.329 104.787 1.00 61.74 ATOM 107 OE1 GLU D 426 152.759 132.410 105.422 1.00 61.74 ATOM 108 OE2 GLU D 426 151.416 133.064 103.813 1.00 61.74 ATOM 109 N GLN D 427 150.951 129.195 109.392 1.00 59.43 ATOM 110 CA GLN D 427 151.359 128.169 110.349 1.00 59.43 ATOM 111 C GLN D 427 150.159 127.371 110.847 1.00 59.43 ATOM 112 O GLN D 427 150.209 126.138 110.928 1.00 59.43 ATOM 113 CB GLN D 427 152.103 128.814 111.518 1.00 59.43 ATOM 114 CG GLN D 427 152.551 127.835 112.588 1.00 59.43 ATOM 115 CD GLN D 427 153.580 126.846 112.080 1.00 59.43 ATOM 116 OE1 GLN D 427 153.333 125.642 112.039 1.00 59.43 ATOM 117 NE2 GLN D 427 154.743 127.353 111.691 1.00 59.43 ATOM 118 N PHE D 428 149.057 128.062 111.163 1.00 49.31 ATOM 119 CA PHE D 428 147.844 127.363 111.585 1.00 49.31 ATOM 120 C PHE D 428 147.231 126.550 110.449 1.00 49.31 ATOM 121 O PHE D 428 146.651 125.487 110.700 1.00 49.31 ATOM 122 CB PHE D 428 146.813 128.350 112.134 1.00 49.31 ATOM 123 CG PHE D 428 145.592 127.686 112.715 1.00 49.31 ATOM 124 CD1 PHE D 428 145.627 127.141 113.988 1.00 49.31 ATOM 125 CD2 PHE D 428 144.413 127.604 111.988 1.00 49.31 ATOM 126 CE1 PHE D 428 144.509 126.526 114.525 1.00 49.31 ATOM 127 CE2 PHE D 428 143.295 126.987 112.518 1.00 49.31 ATOM 128 CZ PHE D 428 143.343 126.452 113.788 1.00 49.31 ATOM 129 N THR D 429 147.348 127.031 109.208 1.00 51.05 ATOM 130 CA THR D 429 146.860 126.272 108.061 1.00 51.05 ATOM 131 C THR D 429 147.667 124.999 107.855 1.00 51.05 ATOM 132 O THR D 429 147.093 123.919 107.677 1.00 51.05 ATOM 133 CB THR D 429 146.901 127.137 106.802 1.00 51.05 ATOM 134 OG1 THR D 429 146.361 128.432 107.091 1.00 51.05 ATOM 135 CG2 THR D 429 146.102 126.490 105.686 1.00 51.05 ATOM 136 N ARG D 430 148.999 125.107 107.915 1.00 56.21 ATOM 137 CA ARG D 430 149.864 123.939 107.791 1.00 56.21 ATOM 138 C ARG D 430 149.693 122.977 108.961 1.00 56.21 ATOM 139 O ARG D 430 149.912 121.771 108.804 1.00 56.21 ATOM 140 CB ARG D 430 151.320 124.392 107.679 1.00 56.21 ATOM 141 CG ARG D 430 152.281 123.348 107.135 1.00 56.21 ATOM 142 CD ARG D 430 153.563 123.990 106.622 1.00 56.21 ATOM 143 NE ARG D 430 154.258 124.752 107.657 1.00 56.21 ATOM 144 CZ ARG D 430 154.394 126.076 107.649 1.00 56.21 ATOM 145 NH1 ARG D 430 153.877 126.790 106.660 1.00 56.21 ATOM 146 NH2 ARG D 430 155.042 126.684 108.633 1.00 56.21 ATOM 147 N ASP D 431 149.294 123.480 110.130 1.00 54.58 ATOM 148 CA ASP D 431 149.053 122.594 111.263 1.00 54.58 ATOM 149 C ASP D 431 147.714 121.869 111.138 1.00 54.58 ATOM 150 O ASP D 431 147.673 120.640 111.018 1.00 54.58 ATOM 151 CB ASP D 431 149.114 123.386 112.571 1.00 54.58 ATOM 152 CG ASP D 431 150.531 123.554 113.084 1.00 54.58 ATOM 153 OD1 ASP D 431 151.464 123.031 112.439 1.00 54.58 ATOM 154 OD2 ASP D 431 150.712 124.208 114.133 1.00 54.58 ATOM 155 N PHE D 432 146.601 122.616 111.160 1.00 46.08 ATOM 156 CA PHE D 432 145.275 122.010 111.224 1.00 46.08 ATOM 157 C PHE D 432 144.292 122.628 110.233 1.00 46.08 ATOM 158 O PHE D 432 143.131 122.845 110.591 1.00 46.08 ATOM 159 CB PHE D 432 144.677 122.123 112.634 1.00 46.08 ATOM 160 CG PHE D 432 145.677 121.989 113.749 1.00 46.08 ATOM 161 CD1 PHE D 432 146.263 120.766 114.036 1.00 46.08 ATOM 162 CD2 PHE D 432 146.019 123.089 114.521 1.00 46.08 ATOM 163 CE1 PHE D 432 147.178 120.644 115.068 1.00 46.08 ATOM 164 CE2 PHE D 432 146.934 122.975 115.552 1.00 46.08 ATOM 165 CZ PHE D 432 147.513 121.751 115.826 1.00 46.08 ATOM 166 N GLY D 433 144.704 122.916 109.002 1.00 47.64 ATOM 167 CA GLY D 433 143.874 123.660 108.075 1.00 47.64 ATOM 168 C GLY D 433 143.767 123.023 106.703 1.00 47.64 ATOM 169 O GLY D 433 144.662 122.301 106.261 1.00 47.64 ATOM 170 N GLN D 434 142.653 123.304 106.031 1.00 48.84 ATOM 171 CA GLN D 434 142.439 122.917 104.646 1.00 48.84 ATOM 172 C GLN D 434 142.869 124.064 103.731 1.00 48.84 ATOM 173 O GLN D 434 143.500 125.030 104.164 1.00 48.84 ATOM 174 CB GLN D 434 140.979 122.533 104.419 1.00 48.84 ATOM 175 CG GLN D 434 140.596 121.174 104.969 1.00 48.84 ATOM 176 CD GLN D 434 139.245 120.708 104.467 1.00 48.84 ATOM 177 OE1 GLN D 434 138.645 121.334 103.594 1.00 48.84 ATOM 178 NE2 GLN D 434 138.757 119.604 105.020 1.00 48.84 ATOM 179 N GLU D 435 142.524 123.969 102.448 1.00 56.35 ATOM 180 CA GLU D 435 142.843 125.002 101.469 1.00 56.35 ATOM 181 C GLU D 435 141.564 125.419 100.761 1.00 56.35 ATOM 182 O GLU D 435 140.863 124.575 100.194 1.00 56.35 ATOM 183 CB GLU D 435 143.881 124.507 100.458 1.00 56.35 ATOM 184 CG GLU D 435 145.255 124.254 101.053 1.00 56.35 ATOM 185 CD GLU D 435 145.939 125.528 101.508 1.00 56.35 ATOM 186 OE1 GLU D 435 145.724 126.584 100.876 1.00 56.35 ATOM 187 OE2 GLU D 435 146.693 125.474 102.502 1.00 56.35 ATOM 188 N GLY D 436 141.265 126.715 100.790 1.00 56.83 ATOM 189 CA GLY D 436 140.068 127.228 100.155 1.00 56.83 ATOM 190 C GLY D 436 140.287 127.655 98.718 1.00 56.83 ATOM 191 O GLY D 436 139.382 127.515 97.887 1.00 56.83 ATOM 192 N ASN D 437 141.488 128.169 98.435 1.00 62.58 ATOM 193 CA ASN D 437 141.923 128.650 97.115 1.00 62.58 ATOM 194 C ASN D 437 140.988 129.700 96.511 1.00 62.58 ATOM 195 O ASN D 437 141.380 130.848 96.301 1.00 62.58 ATOM 196 CB ASN D 437 142.088 127.479 96.137 1.00 62.58 ATOM 197 CG ASN D 437 143.306 126.632 96.444 1.00 62.58 ATOM 198 OD1 ASN D 437 144.321 127.135 96.926 1.00 62.58 ATOM 199 ND2 ASN D 437 143.212 125.337 96.166 1.00 62.58 TER