HEADER TRANSCRIPTION 31-DEC-69 6OUL TITLE Cryo-EM structure of Escherichia coli RNAP polymerase bound to rpsTP2 TITLE 2 promoter DNA COMPND MOL_ID: 5; COMPND 2 MOLECULE: RNA polymerase sigma factor RpoD; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 6OUL L 1 613 UNP Q0P6L9 Q0P6L9_ECOL 1 613 SEQRES 1 L 32 ARG THR ILE ARG ILE PRO VAL HIS MET ILE GLU THR ILE SEQRES 2 L 32 ASN LYS LEU ASN ARG ILE SER ARG GLN MET LEU GLN GLU SEQRES 3 L 32 MET GLY ARG GLU PRO THR ATOM 1 N ARG L 448 160.048 153.335 133.505 1.00 17.80 ATOM 2 CA ARG L 448 160.245 152.718 134.801 1.00 17.80 ATOM 3 C ARG L 448 161.731 152.612 135.104 1.00 17.80 ATOM 4 O ARG L 448 162.555 152.455 134.205 1.00 17.80 ATOM 5 CB ARG L 448 159.633 151.324 134.824 1.00 17.80 ATOM 6 CG ARG L 448 158.171 151.246 134.467 1.00 17.80 ATOM 7 CD ARG L 448 157.385 152.012 135.473 1.00 17.80 ATOM 8 NE ARG L 448 155.959 151.812 135.317 1.00 17.80 ATOM 9 CZ ARG L 448 155.296 150.879 135.977 1.00 17.80 ATOM 10 NH1 ARG L 448 155.952 150.099 136.812 1.00 17.80 ATOM 11 NH2 ARG L 448 153.993 150.734 135.813 1.00 17.80 ATOM 12 N THR L 449 162.080 152.674 136.385 1.00 16.99 ATOM 13 CA THR L 449 163.461 152.389 136.752 1.00 16.99 ATOM 14 C THR L 449 163.758 150.914 136.612 1.00 16.99 ATOM 15 O THR L 449 164.839 150.528 136.155 1.00 16.99 ATOM 16 CB THR L 449 163.753 152.843 138.172 1.00 16.99 ATOM 17 OG1 THR L 449 163.653 154.266 138.258 1.00 16.99 ATOM 18 CG2 THR L 449 165.141 152.424 138.560 1.00 16.99 ATOM 19 N ILE L 450 162.822 150.077 137.040 1.00 16.67 ATOM 20 CA ILE L 450 162.913 148.647 136.816 1.00 16.67 ATOM 21 C ILE L 450 162.043 148.340 135.613 1.00 16.67 ATOM 22 O ILE L 450 160.831 148.191 135.736 1.00 16.67 ATOM 23 CB ILE L 450 162.509 147.859 138.062 1.00 16.67 ATOM 24 CG1 ILE L 450 161.110 148.202 138.527 1.00 16.67 ATOM 25 CG2 ILE L 450 163.385 148.214 139.200 1.00 16.67 ATOM 26 CD1 ILE L 450 160.655 147.300 139.616 1.00 16.67 ATOM 27 N ARG L 451 162.655 148.318 134.436 1.00 18.56 ATOM 28 CA ARG L 451 161.884 148.238 133.210 1.00 18.56 ATOM 29 C ARG L 451 161.078 146.962 133.185 1.00 18.56 ATOM 30 O ARG L 451 161.545 145.913 133.625 1.00 18.56 ATOM 31 CB ARG L 451 162.787 148.277 131.996 1.00 18.56 ATOM 32 CG ARG L 451 162.024 148.161 130.704 1.00 18.56 ATOM 33 CD ARG L 451 162.942 148.188 129.502 1.00 18.56 ATOM 34 NE ARG L 451 163.817 147.029 129.458 1.00 18.56 ATOM 35 CZ ARG L 451 163.466 145.867 128.938 1.00 18.56 ATOM 36 NH1 ARG L 451 162.268 145.723 128.420 1.00 18.56 ATOM 37 NH2 ARG L 451 164.306 144.853 128.940 1.00 18.56 ATOM 38 N ILE L 452 159.853 147.063 132.702 1.00 18.24 ATOM 39 CA ILE L 452 158.969 145.917 132.544 1.00 18.24 ATOM 40 C ILE L 452 158.588 145.857 131.075 1.00 18.24 ATOM 41 O ILE L 452 158.426 146.908 130.453 1.00 18.24 ATOM 42 CB ILE L 452 157.727 146.028 133.437 1.00 18.24 ATOM 43 CG1 ILE L 452 156.761 147.020 132.886 1.00 18.24 ATOM 44 CG2 ILE L 452 158.087 146.623 134.767 1.00 18.24 ATOM 45 CD1 ILE L 452 155.557 147.027 133.714 1.00 18.24 ATOM 46 N PRO L 453 158.479 144.689 130.491 1.00 21.96 ATOM 47 CA PRO L 453 158.386 144.583 129.031 1.00 21.96 ATOM 48 C PRO L 453 157.179 145.300 128.465 1.00 21.96 ATOM 49 O PRO L 453 156.354 145.802 129.218 1.00 21.96 ATOM 50 CB PRO L 453 158.279 143.073 128.806 1.00 21.96 ATOM 51 CG PRO L 453 158.811 142.486 130.029 1.00 21.96 ATOM 52 CD PRO L 453 158.465 143.368 131.133 1.00 21.96 ATOM 53 N VAL L 454 157.063 145.363 127.144 1.00 22.62 ATOM 54 CA VAL L 454 155.967 146.115 126.546 1.00 22.62 ATOM 55 C VAL L 454 154.638 145.424 126.788 1.00 22.62 ATOM 56 O VAL L 454 153.642 146.076 127.128 1.00 22.62 ATOM 57 CB VAL L 454 156.209 146.326 125.048 1.00 22.62 ATOM 58 CG1 VAL L 454 155.033 147.040 124.436 1.00 22.62 ATOM 59 CG2 VAL L 454 157.486 147.096 124.846 1.00 22.62 ATOM 60 N HIS L 455 154.590 144.103 126.620 1.00 26.45 ATOM 61 CA HIS L 455 153.320 143.401 126.776 1.00 26.45 ATOM 62 C HIS L 455 152.788 143.543 128.193 1.00 26.45 ATOM 63 O HIS L 455 151.574 143.642 128.410 1.00 26.45 ATOM 64 CB HIS L 455 153.481 141.928 126.421 1.00 26.45 ATOM 65 CG HIS L 455 154.314 141.167 127.397 1.00 26.45 ATOM 66 ND1 HIS L 455 153.788 140.631 128.551 1.00 26.45 ATOM 67 CD2 HIS L 455 155.630 140.867 127.407 1.00 26.45 ATOM 68 CE1 HIS L 455 154.747 140.034 129.231 1.00 26.45 ATOM 69 NE2 HIS L 455 155.875 140.162 128.559 1.00 26.45 ATOM 70 N MET L 456 153.684 143.594 129.170 1.00 21.05 ATOM 71 CA MET L 456 153.246 143.684 130.550 1.00 21.05 ATOM 72 C MET L 456 152.680 145.058 130.842 1.00 21.05 ATOM 73 O MET L 456 151.726 145.191 131.611 1.00 21.05 ATOM 74 CB MET L 456 154.394 143.382 131.488 1.00 21.05 ATOM 75 CG MET L 456 153.944 143.042 132.850 1.00 21.05 ATOM 76 SD MET L 456 153.255 141.404 132.798 1.00 21.05 ATOM 77 CE MET L 456 152.318 141.431 134.302 1.00 21.05 ATOM 78 N ILE L 457 153.246 146.101 130.238 1.00 21.42 ATOM 79 CA ILE L 457 152.674 147.421 130.453 1.00 21.42 ATOM 80 C ILE L 457 151.346 147.548 129.750 1.00 21.42 ATOM 81 O ILE L 457 150.446 148.245 130.225 1.00 21.42 ATOM 82 CB ILE L 457 153.638 148.531 130.032 1.00 21.42 ATOM 83 CG1 ILE L 457 154.659 148.738 131.132 1.00 21.42 ATOM 84 CG2 ILE L 457 152.901 149.803 129.819 1.00 21.42 ATOM 85 CD1 ILE L 457 155.660 149.792 130.837 1.00 21.42 ATOM 86 N GLU L 458 151.186 146.888 128.611 1.00 25.52 ATOM 87 CA GLU L 458 149.864 146.917 128.010 1.00 25.52 ATOM 88 C GLU L 458 148.851 146.222 128.902 1.00 25.52 ATOM 89 O GLU L 458 147.729 146.710 129.076 1.00 25.52 ATOM 90 CB GLU L 458 149.879 146.296 126.627 1.00 25.52 ATOM 91 CG GLU L 458 148.520 146.364 126.042 1.00 25.52 ATOM 92 CD GLU L 458 148.018 147.782 126.029 1.00 25.52 ATOM 93 OE1 GLU L 458 148.858 148.700 125.932 1.00 25.52 ATOM 94 OE2 GLU L 458 146.794 147.986 126.151 1.00 25.52 ATOM 95 N THR L 459 149.238 145.097 129.503 1.00 20.21 ATOM 96 CA THR L 459 148.345 144.440 130.449 1.00 20.21 ATOM 97 C THR L 459 148.014 145.343 131.622 1.00 20.21 ATOM 98 O THR L 459 146.874 145.355 132.095 1.00 20.21 ATOM 99 CB THR L 459 148.965 143.158 130.966 1.00 20.21 ATOM 100 OG1 THR L 459 149.156 142.254 129.879 1.00 20.21 ATOM 101 CG2 THR L 459 148.064 142.551 131.991 1.00 20.21 ATOM 102 N ILE L 460 148.993 146.094 132.126 1.00 16.83 ATOM 103 CA ILE L 460 148.713 146.942 133.280 1.00 16.83 ATOM 104 C ILE L 460 147.788 148.080 132.898 1.00 16.83 ATOM 105 O ILE L 460 146.929 148.487 133.686 1.00 16.83 ATOM 106 CB ILE L 460 149.997 147.489 133.911 1.00 16.83 ATOM 107 CG1 ILE L 460 150.808 146.381 134.541 1.00 16.83 ATOM 108 CG2 ILE L 460 149.635 148.459 134.976 1.00 16.83 ATOM 109 CD1 ILE L 460 152.121 146.850 135.071 1.00 16.83 ATOM 110 N ASN L 461 147.964 148.644 131.709 1.00 16.90 ATOM 111 CA ASN L 461 147.048 149.696 131.295 1.00 16.90 ATOM 112 C ASN L 461 145.653 149.137 131.109 1.00 16.90 ATOM 113 O ASN L 461 144.664 149.820 131.379 1.00 16.90 ATOM 114 CB ASN L 461 147.548 150.368 130.025 1.00 16.90 ATOM 115 CG ASN L 461 148.803 151.158 130.262 1.00 16.90 ATOM 116 OD1 ASN L 461 148.900 151.911 131.225 1.00 16.90 ATOM 117 ND2 ASN L 461 149.791 150.963 129.413 1.00 16.90 ATOM 118 N LYS L 462 145.551 147.879 130.689 1.00 19.15 ATOM 119 CA LYS L 462 144.236 147.258 130.600 1.00 19.15 ATOM 120 C LYS L 462 143.609 147.110 131.976 1.00 19.15 ATOM 121 O LYS L 462 142.424 147.403 132.156 1.00 19.15 ATOM 122 CB LYS L 462 144.326 145.907 129.907 1.00 19.15 ATOM 123 CG LYS L 462 142.983 145.322 129.576 1.00 19.15 ATOM 124 CD LYS L 462 143.132 143.957 128.927 1.00 19.15 ATOM 125 CE LYS L 462 143.682 144.081 127.524 1.00 19.15 ATOM 126 NZ LYS L 462 143.700 142.773 126.824 1.00 19.15 ATOM 127 N LEU L 463 144.390 146.675 132.965 1.00 19.14 ATOM 128 CA LEU L 463 143.855 146.572 134.319 1.00 19.14 ATOM 129 C LEU L 463 143.398 147.918 134.837 1.00 19.14 ATOM 130 O LEU L 463 142.319 148.029 135.414 1.00 19.14 ATOM 131 CB LEU L 463 144.876 146.007 135.293 1.00 19.14 ATOM 132 CG LEU L 463 145.273 144.549 135.346 1.00 19.14 ATOM 133 CD1 LEU L 463 146.353 144.454 136.357 1.00 19.14 ATOM 134 CD2 LEU L 463 144.123 143.739 135.812 1.00 19.14 ATOM 135 N ASN L 464 144.220 148.948 134.673 1.00 20.45 ATOM 136 CA ASN L 464 143.843 150.252 135.201 1.00 20.45 ATOM 137 C ASN L 464 142.616 150.802 134.499 1.00 20.45 ATOM 138 O ASN L 464 141.741 151.380 135.145 1.00 20.45 ATOM 139 CB ASN L 464 144.999 151.231 135.093 1.00 20.45 ATOM 140 CG ASN L 464 146.127 150.875 136.004 1.00 20.45 ATOM 141 OD1 ASN L 464 147.244 150.627 135.560 1.00 20.45 ATOM 142 ND2 ASN L 464 145.843 150.823 137.296 1.00 20.45 ATOM 143 N ARG L 465 142.513 150.624 133.185 1.00 22.10 ATOM 144 CA ARG L 465 141.345 151.149 132.492 1.00 22.10 ATOM 145 C ARG L 465 140.077 150.411 132.897 1.00 22.10 ATOM 146 O ARG L 465 139.032 151.035 133.136 1.00 22.10 ATOM 147 CB ARG L 465 141.553 151.077 130.990 1.00 22.10 ATOM 148 CG ARG L 465 140.393 151.618 130.204 1.00 22.10 ATOM 149 CD ARG L 465 140.678 151.515 128.733 1.00 22.10 ATOM 150 NE ARG L 465 140.964 150.139 128.365 1.00 22.10 ATOM 151 CZ ARG L 465 140.035 149.221 128.154 1.00 22.10 ATOM 152 NH1 ARG L 465 138.758 149.535 128.276 1.00 22.10 ATOM 153 NH2 ARG L 465 140.383 147.986 127.827 1.00 22.10 ATOM 154 N ILE L 466 140.142 149.086 133.008 1.00 24.24 ATOM 155 CA ILE L 466 138.953 148.367 133.442 1.00 24.24 ATOM 156 C ILE L 466 138.632 148.651 134.895 1.00 24.24 ATOM 157 O ILE L 466 137.464 148.636 135.287 1.00 24.24 ATOM 158 CB ILE L 466 139.093 146.867 133.191 1.00 24.24 ATOM 159 CG1 ILE L 466 139.052 146.613 131.700 1.00 24.24 ATOM 160 CG2 ILE L 466 137.989 146.127 133.872 1.00 24.24 ATOM 161 CD1 ILE L 466 139.296 145.208 131.337 1.00 24.24 ATOM 162 N SER L 467 139.631 148.945 135.718 1.00 26.57 ATOM 163 CA SER L 467 139.340 149.287 137.101 1.00 26.57 ATOM 164 C SER L 467 138.693 150.649 137.194 1.00 26.57 ATOM 165 O SER L 467 137.789 150.857 138.002 1.00 26.57 ATOM 166 CB SER L 467 140.611 149.259 137.930 1.00 26.57 ATOM 167 OG SER L 467 140.325 149.595 139.270 1.00 26.57 ATOM 168 N ARG L 468 139.140 151.593 136.375 1.00 33.37 ATOM 169 CA ARG L 468 138.480 152.888 136.333 1.00 33.37 ATOM 170 C ARG L 468 137.026 152.740 135.931 1.00 33.37 ATOM 171 O ARG L 468 136.142 153.364 136.530 1.00 33.37 ATOM 172 CB ARG L 468 139.194 153.816 135.363 1.00 33.37 ATOM 173 CG ARG L 468 138.592 155.182 135.341 1.00 33.37 ATOM 174 CD ARG L 468 139.372 156.125 134.460 1.00 33.37 ATOM 175 NE ARG L 468 139.265 155.820 133.038 1.00 33.37 ATOM 176 CZ ARG L 468 138.252 156.205 132.266 1.00 33.37 ATOM 177 NH1 ARG L 468 137.247 156.902 132.783 1.00 33.37 ATOM 178 NH2 ARG L 468 138.240 155.890 130.977 1.00 33.37 ATOM 179 N GLN L 469 136.755 151.916 134.923 1.00 34.17 ATOM 180 CA GLN L 469 135.367 151.695 134.535 1.00 34.17 ATOM 181 C GLN L 469 134.574 151.063 135.668 1.00 34.17 ATOM 182 O GLN L 469 133.479 151.520 136.006 1.00 34.17 ATOM 183 CB GLN L 469 135.295 150.825 133.285 1.00 34.17 ATOM 184 CG GLN L 469 133.887 150.651 132.816 1.00 34.17 ATOM 185 CD GLN L 469 133.238 151.979 132.521 1.00 34.17 ATOM 186 OE1 GLN L 469 132.457 152.491 133.321 1.00 34.17 ATOM 187 NE2 GLN L 469 133.556 152.549 131.367 1.00 34.17 ATOM 188 N MET L 470 135.127 150.025 136.287 1.00 35.40 ATOM 189 CA MET L 470 134.425 149.324 137.354 1.00 35.40 ATOM 190 C MET L 470 134.183 150.237 138.545 1.00 35.40 ATOM 191 O MET L 470 133.262 150.018 139.336 1.00 35.40 ATOM 192 CB MET L 470 135.236 148.106 137.771 1.00 35.40 ATOM 193 CG MET L 470 135.313 147.053 136.715 1.00 35.40 ATOM 194 SD MET L 470 133.696 146.348 136.586 1.00 35.40 ATOM 195 CE MET L 470 133.666 145.551 138.185 1.00 35.40 ATOM 196 N LEU L 471 135.039 151.239 138.717 1.00 32.28 ATOM 197 CA LEU L 471 134.884 152.159 139.835 1.00 32.28 ATOM 198 C LEU L 471 133.816 153.204 139.542 1.00 32.28 ATOM 199 O LEU L 471 133.017 153.543 140.417 1.00 32.28 ATOM 200 CB LEU L 471 136.228 152.801 140.153 1.00 32.28 ATOM 201 CG LEU L 471 136.367 153.704 141.354 1.00 32.28 ATOM 202 CD1 LEU L 471 137.747 153.527 141.897 1.00 32.28 ATOM 203 CD2 LEU L 471 136.193 155.111 140.873 1.00 32.28 ATOM 204 N GLN L 472 133.776 153.723 138.311 1.00 34.42 ATOM 205 CA GLN L 472 132.683 154.627 137.951 1.00 34.42 ATOM 206 C GLN L 472 131.347 153.912 137.922 1.00 34.42 ATOM 207 O GLN L 472 130.303 154.550 138.064 1.00 34.42 ATOM 208 CB GLN L 472 132.913 155.274 136.591 1.00 34.42 ATOM 209 CG GLN L 472 134.028 156.265 136.549 1.00 34.42 ATOM 210 CD GLN L 472 133.737 157.453 137.409 1.00 34.42 ATOM 211 OE1 GLN L 472 132.589 157.854 137.544 1.00 34.42 ATOM 212 NE2 GLN L 472 134.772 158.043 137.982 1.00 34.42 ATOM 213 N GLU L 473 131.355 152.598 137.711 1.00 40.42 ATOM 214 CA GLU L 473 130.106 151.866 137.529 1.00 40.42 ATOM 215 C GLU L 473 129.619 151.255 138.831 1.00 40.42 ATOM 216 O GLU L 473 128.532 151.587 139.308 1.00 40.42 ATOM 217 CB GLU L 473 130.292 150.785 136.471 1.00 40.42 ATOM 218 CG GLU L 473 129.070 149.983 136.163 1.00 40.42 ATOM 219 CD GLU L 473 129.339 148.962 135.090 1.00 40.42 ATOM 220 OE1 GLU L 473 130.482 148.916 134.598 1.00 40.42 ATOM 221 OE2 GLU L 473 128.415 148.198 134.743 1.00 40.42 ATOM 222 N MET L 474 130.424 150.393 139.440 1.00 43.31 ATOM 223 CA MET L 474 130.088 149.739 140.699 1.00 43.31 ATOM 224 C MET L 474 129.985 150.701 141.875 1.00 43.31 ATOM 225 O MET L 474 129.828 150.241 143.009 1.00 43.31 ATOM 226 CB MET L 474 131.138 148.679 141.041 1.00 43.31 ATOM 227 CG MET L 474 131.271 147.556 140.040 1.00 43.31 ATOM 228 SD MET L 474 129.796 146.547 139.872 1.00 43.31 ATOM 229 CE MET L 474 129.134 147.168 138.331 1.00 43.31 ATOM 230 N GLY L 475 130.097 152.001 141.650 1.00 35.96 ATOM 231 CA GLY L 475 130.085 152.986 142.716 1.00 35.96 ATOM 232 C GLY L 475 131.414 153.138 143.383 1.00 35.96 ATOM 233 O GLY L 475 131.964 154.240 143.425 1.00 35.96 ATOM 234 N ARG L 476 131.970 152.045 143.884 1.00 42.30 ATOM 235 CA ARG L 476 133.169 152.014 144.701 1.00 42.30 ATOM 236 C ARG L 476 134.345 151.448 143.911 1.00 42.30 ATOM 237 O ARG L 476 134.325 151.385 142.675 1.00 42.30 ATOM 238 CB ARG L 476 132.895 151.211 145.966 1.00 42.30 ATOM 239 CG ARG L 476 132.407 149.802 145.700 1.00 42.30 ATOM 240 CD ARG L 476 133.550 148.823 145.624 1.00 42.30 ATOM 241 NE ARG L 476 133.095 147.461 145.396 1.00 42.30 ATOM 242 CZ ARG L 476 132.897 146.578 146.363 1.00 42.30 ATOM 243 NH1 ARG L 476 133.124 146.913 147.623 1.00 42.30 ATOM 244 NH2 ARG L 476 132.486 145.357 146.067 1.00 42.30 ATOM 245 N GLU L 477 135.390 151.069 144.626 1.00 39.80 ATOM 246 CA GLU L 477 136.599 150.548 144.004 1.00 39.80 ATOM 247 C GLU L 477 136.538 149.025 143.898 1.00 39.80 ATOM 248 O GLU L 477 136.369 148.346 144.911 1.00 39.80 ATOM 249 CB GLU L 477 137.806 150.971 144.809 1.00 39.80 ATOM 250 CG GLU L 477 139.117 150.664 144.170 1.00 39.80 ATOM 251 CD GLU L 477 140.262 151.238 144.962 1.00 39.80 ATOM 252 OE1 GLU L 477 140.003 151.826 146.032 1.00 39.80 ATOM 253 OE2 GLU L 477 141.418 151.119 144.512 1.00 39.80 ATOM 254 N PRO L 478 136.703 148.457 142.708 1.00 39.82 ATOM 255 CA PRO L 478 136.542 147.013 142.545 1.00 39.82 ATOM 256 C PRO L 478 137.678 146.238 143.182 1.00 39.82 ATOM 257 O PRO L 478 138.822 146.685 143.236 1.00 39.82 ATOM 258 CB PRO L 478 136.551 146.833 141.030 1.00 39.82 ATOM 259 CG PRO L 478 137.393 147.943 140.555 1.00 39.82 ATOM 260 CD PRO L 478 137.105 149.101 141.452 1.00 39.82 ATOM 261 N THR L 479 137.336 145.045 143.648 1.00 41.11 ATOM 262 CA THR L 479 138.179 144.098 144.356 1.00 41.11 ATOM 263 C THR L 479 138.920 143.182 143.384 1.00 41.11 ATOM 264 O THR L 479 138.402 142.855 142.316 1.00 41.11 ATOM 265 CB THR L 479 137.328 143.265 145.299 1.00 41.11 ATOM 266 OG1 THR L 479 138.145 142.320 145.996 1.00 41.11 ATOM 267 CG2 THR L 479 136.252 142.547 144.525 1.00 41.11 TER