HEADER IMMUNE SYSTEM 31-DEC-69 6PE9 TITLE Crystal Structure of CD40 complexed to FAB516 COMPND MOL_ID: 3; COMPND 2 MOLECULE: Tumor necrosis factor receptor superfamily member 5; COMPND 3 CHAIN: G, I, J, U, V; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.13 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU V 33 REMARK 465 PHE V 34 REMARK 465 THR V 35 DBREF 6PE9 V 21 193 UNP P25942 TNR5_HUMAN 21 193 SEQRES 1 V 36 CYS GLN PRO GLY GLN LYS LEU VAL SER ASP CYS THR GLU SEQRES 2 V 36 PHE THR GLU THR GLU CYS LEU PRO CYS GLY GLU SER GLU SEQRES 3 V 36 PHE LEU ASP THR TRP ASN ARG GLU THR HIS ATOM 1 N CYS V 41 213.117 -13.528 152.988 1.00 85.88 ATOM 2 CA CYS V 41 214.473 -13.102 153.311 1.00 88.28 ATOM 3 C CYS V 41 214.611 -11.597 153.109 1.00 86.35 ATOM 4 O CYS V 41 213.803 -10.993 152.401 1.00 86.45 ATOM 5 CB CYS V 41 215.505 -13.829 152.441 1.00 91.11 ATOM 6 SG CYS V 41 215.573 -15.627 152.578 1.00 97.67 ATOM 7 N GLN V 42 215.654 -11.005 153.711 1.00 85.31 ATOM 8 CA GLN V 42 215.933 -9.585 153.538 1.00 82.03 ATOM 9 C GLN V 42 216.140 -9.266 152.053 1.00 80.45 ATOM 10 O GLN V 42 216.485 -10.149 151.259 1.00 79.92 ATOM 11 CB GLN V 42 217.165 -9.186 154.363 1.00 78.09 ATOM 12 N PRO V 43 215.898 -8.020 151.638 1.00 75.07 ATOM 13 CA PRO V 43 216.229 -7.645 150.258 1.00 71.69 ATOM 14 C PRO V 43 217.742 -7.648 150.088 1.00 71.75 ATOM 15 O PRO V 43 218.468 -6.969 150.819 1.00 72.47 ATOM 16 CB PRO V 43 215.629 -6.242 150.112 1.00 67.41 ATOM 17 CG PRO V 43 214.685 -6.110 151.236 1.00 72.06 ATOM 18 CD PRO V 43 215.266 -6.906 152.353 1.00 74.30 ATOM 19 N GLY V 44 218.216 -8.442 149.140 1.00 68.38 ATOM 20 CA GLY V 44 219.624 -8.712 148.975 1.00 68.29 ATOM 21 C GLY V 44 220.028 -10.098 149.411 1.00 73.24 ATOM 22 O GLY V 44 221.130 -10.545 149.071 1.00 71.64 ATOM 23 N GLN V 45 219.167 -10.786 150.154 1.00 76.39 ATOM 24 CA GLN V 45 219.392 -12.153 150.586 1.00 78.69 ATOM 25 C GLN V 45 218.581 -13.096 149.716 1.00 79.83 ATOM 26 O GLN V 45 217.465 -12.769 149.314 1.00 81.12 ATOM 27 CB GLN V 45 218.987 -12.319 152.047 1.00 83.57 ATOM 28 CG GLN V 45 219.780 -11.464 153.013 1.00 86.16 ATOM 29 CD GLN V 45 220.605 -12.303 153.971 1.00 94.22 ATOM 30 OE1 GLN V 45 220.057 -13.069 154.774 1.00100.12 ATOM 31 NE2 GLN V 45 221.927 -12.180 153.883 1.00 91.87 ATOM 32 N LYS V 46 219.137 -14.262 149.423 1.00 81.04 ATOM 33 CA LYS V 46 218.405 -15.285 148.696 1.00 87.14 ATOM 34 C LYS V 46 218.073 -16.436 149.637 1.00 95.11 ATOM 35 O LYS V 46 218.830 -16.730 150.562 1.00 96.99 ATOM 36 CB LYS V 46 219.201 -15.795 147.489 1.00 83.33 ATOM 37 CG LYS V 46 220.339 -16.735 147.834 1.00 87.06 ATOM 38 CD LYS V 46 220.966 -17.346 146.590 1.00 88.06 ATOM 39 CE LYS V 46 222.257 -16.625 146.196 1.00 85.44 ATOM 40 NZ LYS V 46 222.956 -17.283 145.050 1.00 85.22 ATOM 41 N LEU V 47 216.929 -17.079 149.392 1.00 98.45 ATOM 42 CA LEU V 47 216.468 -18.199 150.206 1.00102.26 ATOM 43 C LEU V 47 217.257 -19.471 149.901 1.00104.76 ATOM 44 O LEU V 47 217.509 -19.798 148.737 1.00101.56 ATOM 45 CB LEU V 47 214.972 -18.432 149.969 1.00102.77 ATOM 46 CG LEU V 47 214.239 -19.539 150.739 1.00109.79 ATOM 47 CD1 LEU V 47 212.785 -19.164 150.996 1.00104.97 ATOM 48 CD2 LEU V 47 214.299 -20.868 150.004 1.00112.35 ATOM 49 N VAL V 48 217.632 -20.205 150.958 1.00109.88 ATOM 50 CA VAL V 48 218.341 -21.476 150.830 1.00114.62 ATOM 51 C VAL V 48 217.567 -22.626 151.473 1.00119.64 ATOM 52 O VAL V 48 217.441 -23.706 150.887 1.00120.31 ATOM 53 CB VAL V 48 219.771 -21.391 151.408 1.00110.98 ATOM 54 CG1 VAL V 48 220.555 -22.643 151.054 1.00109.26 ATOM 55 CG2 VAL V 48 220.478 -20.178 150.873 1.00108.16 ATOM 56 N SER V 49 217.063 -22.423 152.690 1.00122.02 ATOM 57 CA SER V 49 216.281 -23.427 153.407 1.00125.04 ATOM 58 C SER V 49 214.849 -22.924 153.596 1.00128.86 ATOM 59 O SER V 49 214.483 -21.842 153.128 1.00129.37 ATOM 60 CB SER V 49 216.940 -23.763 154.748 1.00125.56 ATOM 61 OG SER V 49 218.276 -24.206 154.566 1.00123.32 ATOM 62 N ASP V 50 214.027 -23.715 154.287 1.00130.85 ATOM 63 CA ASP V 50 212.630 -23.363 154.516 1.00132.10 ATOM 64 C ASP V 50 212.354 -23.231 156.013 1.00134.32 ATOM 65 O ASP V 50 213.155 -23.646 156.853 1.00138.17 ATOM 66 CB ASP V 50 211.693 -24.382 153.853 1.00130.48 ATOM 67 CG ASP V 50 211.381 -24.023 152.405 1.00129.73 ATOM 68 OD1 ASP V 50 210.753 -22.966 152.170 1.00127.26 ATOM 69 OD2 ASP V 50 211.780 -24.785 151.500 1.00127.75 ATOM 70 N CYS V 51 211.187 -22.652 156.330 1.00133.24 ATOM 71 CA CYS V 51 210.954 -21.993 157.619 1.00133.70 ATOM 72 C CYS V 51 211.276 -22.885 158.818 1.00137.36 ATOM 73 O CYS V 51 212.179 -22.579 159.605 1.00137.66 ATOM 74 CB CYS V 51 209.502 -21.505 157.690 1.00133.02 ATOM 75 SG CYS V 51 209.092 -20.511 159.151 1.00127.45 ATOM 76 N THR V 52 210.544 -23.990 158.973 1.00138.50 ATOM 77 CA THR V 52 210.626 -24.862 160.162 1.00139.17 ATOM 78 C THR V 52 210.619 -24.083 161.482 1.00137.98 ATOM 79 O THR V 52 209.940 -24.461 162.440 1.00134.72 ATOM 80 CB THR V 52 211.883 -25.764 160.129 1.00138.22 ATOM 81 OG1 THR V 52 211.821 -26.631 158.991 1.00135.61 ATOM 82 CG2 THR V 52 211.978 -26.610 161.398 1.00136.39 ATOM 83 N GLU V 56 215.192 -18.120 162.476 1.00122.60 ATOM 84 CA GLU V 56 214.109 -18.332 161.521 1.00129.14 ATOM 85 C GLU V 56 214.569 -19.221 160.356 1.00130.06 ATOM 86 O GLU V 56 214.940 -20.380 160.558 1.00127.76 ATOM 87 CB GLU V 56 213.580 -16.984 160.996 1.00130.85 ATOM 88 CG GLU V 56 212.144 -17.029 160.438 1.00134.94 ATOM 89 CD GLU V 56 211.848 -15.931 159.414 1.00136.65 ATOM 90 OE1 GLU V 56 211.989 -14.736 159.755 1.00137.07 ATOM 91 OE2 GLU V 56 211.469 -16.268 158.266 1.00133.50 ATOM 92 N THR V 57 214.538 -18.664 159.145 1.00131.18 ATOM 93 CA THR V 57 214.905 -19.363 157.921 1.00126.75 ATOM 94 C THR V 57 216.403 -19.238 157.672 1.00123.33 ATOM 95 O THR V 57 217.038 -18.263 158.079 1.00123.16 ATOM 96 CB THR V 57 214.143 -18.788 156.726 1.00124.56 ATOM 97 OG1 THR V 57 212.835 -18.372 157.139 1.00122.11 ATOM 98 CG2 THR V 57 214.012 -19.832 155.638 1.00124.95 ATOM 99 N GLU V 58 216.966 -20.229 156.990 1.00123.06 ATOM 100 CA GLU V 58 218.399 -20.252 156.701 1.00122.82 ATOM 101 C GLU V 58 218.611 -19.811 155.256 1.00118.88 ATOM 102 O GLU V 58 218.491 -20.613 154.327 1.00117.16 ATOM 103 CB GLU V 58 218.982 -21.638 156.957 1.00124.50 ATOM 104 CG GLU V 58 219.731 -21.762 158.282 1.00128.55 ATOM 105 CD GLU V 58 221.142 -21.189 158.231 1.00129.87 ATOM 106 OE1 GLU V 58 221.519 -20.621 157.186 1.00125.93 ATOM 107 OE2 GLU V 58 221.878 -21.306 159.237 1.00131.71 ATOM 108 N CYS V 59 218.941 -18.532 155.065 1.00116.93 ATOM 109 CA CYS V 59 219.143 -18.015 153.719 1.00109.74 ATOM 110 C CYS V 59 220.250 -16.960 153.705 1.00104.98 ATOM 111 O CYS V 59 220.326 -16.114 154.603 1.00102.28 ATOM 112 CB CYS V 59 217.836 -17.452 153.159 1.00106.85 ATOM 113 SG CYS V 59 217.035 -16.039 153.947 1.00107.64 ATOM 114 N LEU V 60 221.091 -17.014 152.667 1.00100.89 ATOM 115 CA LEU V 60 222.364 -16.314 152.547 1.00 97.19 ATOM 116 C LEU V 60 222.332 -15.310 151.390 1.00 90.99 ATOM 117 O LEU V 60 221.459 -15.394 150.517 1.00 90.04 ATOM 118 CB LEU V 60 223.495 -17.344 152.360 1.00 93.36 ATOM 119 CG LEU V 60 223.794 -17.956 150.989 1.00 93.11 ATOM 120 CD1 LEU V 60 224.886 -17.184 150.248 1.00 93.76 ATOM 121 CD2 LEU V 60 224.154 -19.434 151.116 1.00 97.07 ATOM 122 N PRO V 61 223.261 -14.341 151.354 1.00 86.05 ATOM 123 CA PRO V 61 223.122 -13.185 150.455 1.00 81.97 ATOM 124 C PRO V 61 223.457 -13.475 148.990 1.00 78.00 ATOM 125 O PRO V 61 223.907 -14.552 148.607 1.00 78.17 ATOM 126 CB PRO V 61 224.105 -12.174 151.047 1.00 80.98 ATOM 127 CG PRO V 61 225.132 -12.995 151.674 1.00 84.81 ATOM 128 CD PRO V 61 224.388 -14.145 152.281 1.00 87.84 ATOM 129 N CYS V 62 223.231 -12.452 148.168 1.00 73.16 ATOM 130 CA CYS V 62 223.290 -12.567 146.721 1.00 65.63 ATOM 131 C CYS V 62 224.715 -12.442 146.217 1.00 61.70 ATOM 132 O CYS V 62 225.554 -11.786 146.833 1.00 61.67 ATOM 133 CB CYS V 62 222.434 -11.482 146.056 1.00 62.81 ATOM 134 SG CYS V 62 220.668 -11.837 145.886 1.00 67.36 ATOM 135 N GLY V 63 224.970 -13.048 145.065 1.00 57.30 ATOM 136 CA GLY V 63 226.279 -12.967 144.452 1.00 55.33 ATOM 137 C GLY V 63 226.697 -11.535 144.163 1.00 53.75 ATOM 138 O GLY V 63 225.916 -10.590 144.230 1.00 55.40 ATOM 139 N GLU V 64 227.981 -11.386 143.827 1.00 49.08 ATOM 140 CA GLU V 64 228.545 -10.078 143.534 1.00 44.60 ATOM 141 C GLU V 64 227.902 -9.412 142.326 1.00 47.00 ATOM 142 O GLU V 64 227.961 -8.182 142.213 1.00 48.12 ATOM 143 CB GLU V 64 230.044 -10.206 143.308 1.00 43.76 ATOM 144 CG GLU V 64 230.760 -8.895 143.005 1.00 45.49 ATOM 145 CD GLU V 64 230.871 -8.582 141.504 1.00 47.36 ATOM 146 OE1 GLU V 64 230.460 -9.435 140.683 1.00 47.51 ATOM 147 OE2 GLU V 64 231.369 -7.481 141.150 1.00 46.16 ATOM 148 N SER V 65 227.299 -10.169 141.410 1.00 46.18 ATOM 149 CA SER V 65 226.663 -9.549 140.251 1.00 47.29 ATOM 150 C SER V 65 225.172 -9.809 140.201 1.00 45.92 ATOM 151 O SER V 65 224.587 -9.849 139.128 1.00 45.60 ATOM 152 CB SER V 65 227.308 -10.007 138.954 1.00 48.87 ATOM 153 OG SER V 65 228.305 -9.069 138.604 1.00 53.91 ATOM 154 N GLU V 66 224.550 -9.960 141.354 1.00 46.58 ATOM 155 CA GLU V 66 223.180 -10.403 141.433 1.00 47.01 ATOM 156 C GLU V 66 222.435 -9.451 142.333 1.00 47.24 ATOM 157 O GLU V 66 223.045 -8.634 143.015 1.00 47.78 ATOM 158 CB GLU V 66 223.108 -11.837 141.953 1.00 51.70 ATOM 159 CG GLU V 66 223.599 -12.847 140.936 1.00 54.48 ATOM 160 CD GLU V 66 223.796 -14.237 141.498 1.00 61.10 ATOM 161 OE1 GLU V 66 223.833 -14.401 142.745 1.00 59.71 ATOM 162 OE2 GLU V 66 223.917 -15.165 140.665 1.00 64.23 ATOM 163 N PHE V 67 221.107 -9.546 142.313 1.00 48.66 ATOM 164 CA PHE V 67 220.295 -8.719 143.190 1.00 49.68 ATOM 165 C PHE V 67 218.936 -9.353 143.434 1.00 53.77 ATOM 166 O PHE V 67 218.444 -10.157 142.634 1.00 54.57 ATOM 167 CB PHE V 67 220.124 -7.315 142.625 1.00 46.27 ATOM 168 CG PHE V 67 219.129 -7.206 141.495 1.00 48.09 ATOM 169 CD1 PHE V 67 219.466 -7.601 140.208 1.00 46.42 ATOM 170 CD2 PHE V 67 217.878 -6.633 141.707 1.00 48.31 ATOM 171 CE1 PHE V 67 218.566 -7.459 139.164 1.00 45.79 ATOM 172 CE2 PHE V 67 216.975 -6.495 140.662 1.00 48.47 ATOM 173 CZ PHE V 67 217.318 -6.909 139.391 1.00 45.08 ATOM 174 N LEU V 68 218.350 -8.989 144.573 1.00 51.45 ATOM 175 CA LEU V 68 216.946 -9.250 144.859 1.00 57.06 ATOM 176 C LEU V 68 216.416 -8.021 145.571 1.00 59.96 ATOM 177 O LEU V 68 216.878 -7.711 146.670 1.00 60.36 ATOM 178 CB LEU V 68 216.757 -10.503 145.716 1.00 61.36 ATOM 179 CG LEU V 68 217.025 -11.859 145.059 1.00 61.83 ATOM 180 CD1 LEU V 68 217.161 -12.927 146.111 1.00 67.57 ATOM 181 CD2 LEU V 68 215.941 -12.227 144.080 1.00 62.46 ATOM 182 N ASP V 69 215.466 -7.317 144.946 1.00 62.67 ATOM 183 CA ASP V 69 215.066 -5.972 145.356 1.00 63.01 ATOM 184 C ASP V 69 213.898 -5.942 146.323 1.00 66.51 ATOM 185 O ASP V 69 213.444 -4.846 146.676 1.00 64.87 ATOM 186 CB ASP V 69 214.699 -5.118 144.135 1.00 67.39 ATOM 187 CG ASP V 69 213.379 -5.545 143.479 1.00 72.39 ATOM 188 OD1 ASP V 69 213.280 -6.712 143.027 1.00 72.47 ATOM 189 OD2 ASP V 69 212.446 -4.705 143.408 1.00 74.06 ATOM 190 N THR V 70 213.406 -7.107 146.745 1.00 69.66 ATOM 191 CA THR V 70 212.209 -7.238 147.566 1.00 71.96 ATOM 192 C THR V 70 212.471 -8.242 148.681 1.00 74.97 ATOM 193 O THR V 70 213.428 -9.018 148.632 1.00 76.11 ATOM 194 CB THR V 70 211.007 -7.724 146.740 1.00 73.55 ATOM 195 OG1 THR V 70 211.182 -9.111 146.413 1.00 75.33 ATOM 196 CG2 THR V 70 210.880 -6.936 145.437 1.00 70.17 ATOM 197 N TRP V 71 211.608 -8.233 149.692 1.00 76.20 ATOM 198 CA TRP V 71 211.563 -9.368 150.601 1.00 76.88 ATOM 199 C TRP V 71 211.094 -10.576 149.809 1.00 76.99 ATOM 200 O TRP V 71 210.141 -10.485 149.033 1.00 74.13 ATOM 201 CB TRP V 71 210.631 -9.088 151.772 1.00 75.35 ATOM 202 CG TRP V 71 211.120 -7.993 152.656 1.00 78.79 ATOM 203 CD1 TRP V 71 210.942 -6.642 152.480 1.00 81.39 ATOM 204 CD2 TRP V 71 211.870 -8.144 153.864 1.00 80.77 ATOM 205 NE1 TRP V 71 211.536 -5.947 153.510 1.00 80.30 ATOM 206 CE2 TRP V 71 212.112 -6.844 154.372 1.00 81.79 ATOM 207 CE3 TRP V 71 212.357 -9.251 154.572 1.00 80.14 ATOM 208 CZ2 TRP V 71 212.825 -6.626 155.553 1.00 81.75 ATOM 209 CZ3 TRP V 71 213.066 -9.032 155.742 1.00 79.95 ATOM 210 CH2 TRP V 71 213.294 -7.727 156.221 1.00 81.36 ATOM 211 N ASN V 72 211.776 -11.702 149.963 1.00 79.68 ATOM 212 CA ASN V 72 211.558 -12.762 148.998 1.00 81.49 ATOM 213 C ASN V 72 211.698 -14.128 149.635 1.00 84.24 ATOM 214 O ASN V 72 212.488 -14.332 150.560 1.00 82.37 ATOM 215 CB ASN V 72 212.546 -12.660 147.844 1.00 86.18 ATOM 216 CG ASN V 72 213.948 -13.041 148.263 1.00 87.05 ATOM 217 OD1 ASN V 72 214.437 -14.120 147.920 1.00 88.34 ATOM 218 ND2 ASN V 72 214.593 -12.170 149.043 1.00 82.88 ATOM 219 N ARG V 73 210.919 -15.062 149.097 1.00 88.89 ATOM 220 CA ARG V 73 211.091 -16.490 149.304 1.00 92.78 ATOM 221 C ARG V 73 211.675 -17.147 148.059 1.00 95.23 ATOM 222 O ARG V 73 211.425 -18.324 147.798 1.00 97.10 ATOM 223 CB ARG V 73 209.762 -17.145 149.679 1.00 89.46 ATOM 224 N GLU V 74 212.443 -16.389 147.277 1.00 94.53 ATOM 225 CA GLU V 74 212.978 -16.870 146.014 1.00 94.99 ATOM 226 C GLU V 74 214.373 -17.458 146.224 1.00 94.00 ATOM 227 O GLU V 74 215.107 -17.050 147.125 1.00 95.14 ATOM 228 CB GLU V 74 213.033 -15.737 144.989 1.00 92.70 ATOM 229 CG GLU V 74 212.161 -15.985 143.782 1.00 96.14 ATOM 230 CD GLU V 74 212.600 -17.197 142.980 1.00106.24 ATOM 231 OE1 GLU V 74 213.767 -17.634 143.105 1.00112.81 ATOM 232 OE2 GLU V 74 211.759 -17.733 142.230 1.00111.97 ATOM 233 N THR V 75 214.742 -18.422 145.378 1.00 91.72 ATOM 234 CA THR V 75 215.974 -19.180 145.571 1.00 93.59 ATOM 235 C THR V 75 217.126 -18.740 144.669 1.00 91.94 ATOM 236 O THR V 75 218.270 -19.139 144.919 1.00 89.30 ATOM 237 CB THR V 75 215.714 -20.674 145.347 1.00 95.26 ATOM 238 OG1 THR V 75 215.231 -20.875 144.014 1.00 93.73 ATOM 239 CG2 THR V 75 214.685 -21.192 146.330 1.00 95.43 ATOM 240 N HIS V 76 216.854 -17.952 143.629 1.00 89.02 ATOM 241 CA HIS V 76 217.861 -17.430 142.714 1.00 81.03 ATOM 242 C HIS V 76 217.823 -15.909 142.729 1.00 76.56 ATOM 243 O HIS V 76 216.743 -15.317 142.736 1.00 78.90 ATOM 244 CB HIS V 76 217.607 -17.914 141.289 1.00 81.43 ATOM 245 CG HIS V 76 217.891 -19.365 141.073 1.00 88.80 ATOM 246 ND1 HIS V 76 217.203 -20.365 141.725 1.00 95.18 ATOM 247 CD2 HIS V 76 218.768 -19.987 140.250 1.00 90.56 ATOM 248 CE1 HIS V 76 217.657 -21.541 141.329 1.00 95.25 ATOM 249 NE2 HIS V 76 218.606 -21.339 140.432 1.00 95.19 TER