HEADER transcription/dna 31-DEC-69 6PSV TITLE Escherichia coli RNA polymerase promoter unwinding intermediate TITLE 2 (TpreRPo) with TraR and rpsT P2 promoter COMPND MOL_ID: 6; COMPND 2 MOLECULE: RNA polymerase sigma factor RpoD; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 6PSV L 1 613 UNP Q0P6L9 Q0P6L9_ECOL 1 613 SEQRES 1 L 32 ARG THR ILE ARG ILE PRO VAL HIS MET ILE GLU THR ILE SEQRES 2 L 32 ASN LYS LEU ASN ARG ILE SER ARG GLN MET LEU GLN GLU SEQRES 3 L 32 MET GLY ARG GLU PRO THR ATOM 1 N ARG L 448 149.783 191.596 185.117 1.00 31.98 ATOM 2 CA ARG L 448 151.177 191.188 185.109 1.00 31.98 ATOM 3 C ARG L 448 151.392 190.062 186.107 1.00 31.98 ATOM 4 O ARG L 448 150.691 189.971 187.116 1.00 31.98 ATOM 5 CB ARG L 448 152.093 192.363 185.458 1.00 31.98 ATOM 6 CG ARG L 448 151.790 193.654 184.728 1.00 31.98 ATOM 7 CD ARG L 448 152.454 193.683 183.374 1.00 31.98 ATOM 8 NE ARG L 448 153.900 193.838 183.479 1.00 31.98 ATOM 9 CZ ARG L 448 154.528 195.005 183.414 1.00 31.98 ATOM 10 NH1 ARG L 448 153.833 196.120 183.246 1.00 31.98 ATOM 11 NH2 ARG L 448 155.846 195.060 183.517 1.00 31.98 ATOM 12 N THR L 449 152.370 189.207 185.825 1.00 24.46 ATOM 13 CA THR L 449 152.749 188.187 186.794 1.00 24.46 ATOM 14 C THR L 449 153.507 188.807 187.957 1.00 24.46 ATOM 15 O THR L 449 153.218 188.531 189.124 1.00 24.46 ATOM 16 CB THR L 449 153.587 187.110 186.117 1.00 24.46 ATOM 17 OG1 THR L 449 154.969 187.444 186.250 1.00 24.46 ATOM 18 CG2 THR L 449 153.250 187.036 184.650 1.00 24.46 ATOM 19 N ILE L 450 154.494 189.642 187.655 1.00 28.91 ATOM 20 CA ILE L 450 155.126 190.487 188.661 1.00 28.91 ATOM 21 C ILE L 450 154.329 191.777 188.759 1.00 28.91 ATOM 22 O ILE L 450 154.339 192.593 187.834 1.00 28.91 ATOM 23 CB ILE L 450 156.586 190.782 188.302 1.00 28.91 ATOM 24 CG1 ILE L 450 156.679 191.140 186.816 1.00 28.91 ATOM 25 CG2 ILE L 450 157.452 189.602 188.611 1.00 28.91 ATOM 26 CD1 ILE L 450 158.045 191.622 186.363 1.00 28.91 ATOM 27 N ARG L 451 153.640 191.970 189.875 1.00 37.85 ATOM 28 CA ARG L 451 152.782 193.137 190.004 1.00 37.85 ATOM 29 C ARG L 451 153.607 194.388 190.253 1.00 37.85 ATOM 30 O ARG L 451 154.588 194.367 190.997 1.00 37.85 ATOM 31 CB ARG L 451 151.782 192.942 191.139 1.00 37.85 ATOM 32 CG ARG L 451 150.534 193.772 190.997 1.00 37.85 ATOM 33 CD ARG L 451 149.726 193.735 192.270 1.00 37.85 ATOM 34 NE ARG L 451 150.595 193.901 193.424 1.00 37.85 ATOM 35 CZ ARG L 451 150.970 195.073 193.922 1.00 37.85 ATOM 36 NH1 ARG L 451 150.549 196.199 193.373 1.00 37.85 ATOM 37 NH2 ARG L 451 151.772 195.119 194.975 1.00 37.85 ATOM 38 N ILE L 452 153.201 195.482 189.626 1.00 39.44 ATOM 39 CA ILE L 452 153.814 196.784 189.845 1.00 39.44 ATOM 40 C ILE L 452 152.715 197.733 190.295 1.00 39.44 ATOM 41 O ILE L 452 151.567 197.602 189.850 1.00 39.44 ATOM 42 CB ILE L 452 154.513 197.301 188.582 1.00 39.44 ATOM 43 CG1 ILE L 452 153.483 197.620 187.517 1.00 39.44 ATOM 44 CG2 ILE L 452 155.451 196.266 188.031 1.00 39.44 ATOM 45 CD1 ILE L 452 154.063 197.630 186.142 1.00 39.44 ATOM 46 N PRO L 453 153.011 198.686 191.172 1.00 54.11 ATOM 47 CA PRO L 453 151.969 199.565 191.700 1.00 54.11 ATOM 48 C PRO L 453 151.358 200.414 190.604 1.00 54.11 ATOM 49 O PRO L 453 151.892 200.548 189.506 1.00 54.11 ATOM 50 CB PRO L 453 152.717 200.425 192.716 1.00 54.11 ATOM 51 CG PRO L 453 153.934 199.653 193.041 1.00 54.11 ATOM 52 CD PRO L 453 154.307 198.953 191.793 1.00 54.11 ATOM 53 N VAL L 454 150.213 201.009 190.922 1.00 45.18 ATOM 54 CA VAL L 454 149.439 201.677 189.887 1.00 45.18 ATOM 55 C VAL L 454 150.138 202.942 189.422 1.00 45.18 ATOM 56 O VAL L 454 149.972 203.373 188.276 1.00 45.18 ATOM 57 CB VAL L 454 148.025 201.970 190.395 1.00 45.18 ATOM 58 CG1 VAL L 454 148.112 202.753 191.681 1.00 45.18 ATOM 59 CG2 VAL L 454 147.263 202.742 189.350 1.00 45.18 ATOM 60 N HIS L 455 150.933 203.559 190.288 1.00 54.27 ATOM 61 CA HIS L 455 151.667 204.733 189.844 1.00 54.27 ATOM 62 C HIS L 455 152.821 204.347 188.932 1.00 54.27 ATOM 63 O HIS L 455 153.096 205.045 187.949 1.00 54.27 ATOM 64 CB HIS L 455 152.160 205.535 191.041 1.00 54.27 ATOM 65 CG HIS L 455 153.178 204.823 191.865 1.00 54.27 ATOM 66 ND1 HIS L 455 154.517 204.820 191.548 1.00 54.27 ATOM 67 CD2 HIS L 455 153.056 204.086 192.992 1.00 54.27 ATOM 68 CE1 HIS L 455 155.178 204.116 192.446 1.00 54.27 ATOM 69 NE2 HIS L 455 154.315 203.660 193.334 1.00 54.27 ATOM 70 N MET L 456 153.494 203.235 189.214 1.00 43.15 ATOM 71 CA MET L 456 154.509 202.770 188.283 1.00 43.15 ATOM 72 C MET L 456 153.890 202.443 186.938 1.00 43.15 ATOM 73 O MET L 456 154.473 202.740 185.897 1.00 43.15 ATOM 74 CB MET L 456 155.233 201.553 188.834 1.00 43.15 ATOM 75 CG MET L 456 156.605 201.374 188.255 1.00 43.15 ATOM 76 SD MET L 456 157.588 202.876 188.350 1.00 43.15 ATOM 77 CE MET L 456 157.368 203.334 190.058 1.00 43.15 ATOM 78 N ILE L 457 152.702 201.839 186.934 1.00 39.32 ATOM 79 CA ILE L 457 152.040 201.568 185.669 1.00 39.32 ATOM 80 C ILE L 457 151.673 202.848 184.945 1.00 39.32 ATOM 81 O ILE L 457 151.808 202.919 183.721 1.00 39.32 ATOM 82 CB ILE L 457 150.787 200.710 185.867 1.00 39.32 ATOM 83 CG1 ILE L 457 151.174 199.251 185.945 1.00 39.32 ATOM 84 CG2 ILE L 457 149.847 200.896 184.714 1.00 39.32 ATOM 85 CD1 ILE L 457 150.015 198.339 185.780 1.00 39.32 ATOM 86 N GLU L 458 151.188 203.857 185.668 1.00 46.09 ATOM 87 CA GLU L 458 150.972 205.160 185.054 1.00 46.09 ATOM 88 C GLU L 458 152.244 205.671 184.396 1.00 46.09 ATOM 89 O GLU L 458 152.201 206.235 183.297 1.00 46.09 ATOM 90 CB GLU L 458 150.493 206.155 186.105 1.00 46.09 ATOM 91 CG GLU L 458 149.080 205.932 186.603 1.00 46.09 ATOM 92 CD GLU L 458 148.034 206.446 185.638 1.00 46.09 ATOM 93 OE1 GLU L 458 148.378 206.699 184.466 1.00 46.09 ATOM 94 OE2 GLU L 458 146.871 206.609 186.058 1.00 46.09 ATOM 95 N THR L 459 153.389 205.483 185.049 1.00 35.96 ATOM 96 CA THR L 459 154.623 206.005 184.477 1.00 35.96 ATOM 97 C THR L 459 155.063 205.200 183.267 1.00 35.96 ATOM 98 O THR L 459 155.602 205.765 182.316 1.00 35.96 ATOM 99 CB THR L 459 155.735 206.039 185.503 1.00 35.96 ATOM 100 OG1 THR L 459 155.374 206.945 186.546 1.00 35.96 ATOM 101 CG2 THR L 459 156.999 206.523 184.838 1.00 35.96 ATOM 102 N ILE L 460 154.863 203.882 183.286 1.00 36.77 ATOM 103 CA ILE L 460 155.123 203.086 182.087 1.00 36.77 ATOM 104 C ILE L 460 154.262 203.578 180.941 1.00 36.77 ATOM 105 O ILE L 460 154.722 203.692 179.803 1.00 36.77 ATOM 106 CB ILE L 460 154.885 201.590 182.342 1.00 36.77 ATOM 107 CG1 ILE L 460 156.133 200.941 182.911 1.00 36.77 ATOM 108 CG2 ILE L 460 154.559 200.897 181.055 1.00 36.77 ATOM 109 CD1 ILE L 460 156.358 201.208 184.347 1.00 36.77 ATOM 110 N ASN L 461 152.999 203.880 181.225 1.00 41.15 ATOM 111 CA ASN L 461 152.109 204.323 180.166 1.00 41.15 ATOM 112 C ASN L 461 152.529 205.680 179.633 1.00 41.15 ATOM 113 O ASN L 461 152.497 205.916 178.423 1.00 41.15 ATOM 114 CB ASN L 461 150.675 204.362 180.666 1.00 41.15 ATOM 115 CG ASN L 461 150.060 203.003 180.732 1.00 41.15 ATOM 116 OD1 ASN L 461 150.759 201.996 180.728 1.00 41.15 ATOM 117 ND2 ASN L 461 148.740 202.956 180.788 1.00 41.15 ATOM 118 N LYS L 462 152.942 206.589 180.513 1.00 37.66 ATOM 119 CA LYS L 462 153.346 207.894 180.010 1.00 37.66 ATOM 120 C LYS L 462 154.684 207.797 179.295 1.00 37.66 ATOM 121 O LYS L 462 154.949 208.561 178.366 1.00 37.66 ATOM 122 CB LYS L 462 153.385 208.933 181.128 1.00 37.66 ATOM 123 CG LYS L 462 154.706 209.080 181.810 1.00 37.66 ATOM 124 CD LYS L 462 154.832 210.448 182.446 1.00 37.66 ATOM 125 CE LYS L 462 154.204 211.513 181.586 1.00 37.66 ATOM 126 NZ LYS L 462 154.510 212.877 182.100 1.00 37.66 ATOM 127 N LEU L 463 155.514 206.823 179.661 1.00 33.98 ATOM 128 CA LEU L 463 156.743 206.604 178.913 1.00 33.98 ATOM 129 C LEU L 463 156.442 206.101 177.515 1.00 33.98 ATOM 130 O LEU L 463 157.019 206.584 176.538 1.00 33.98 ATOM 131 CB LEU L 463 157.646 205.614 179.637 1.00 33.98 ATOM 132 CG LEU L 463 158.785 206.294 180.382 1.00 33.98 ATOM 133 CD1 LEU L 463 159.912 205.328 180.618 1.00 33.98 ATOM 134 CD2 LEU L 463 159.261 207.459 179.568 1.00 33.98 ATOM 135 N ASN L 464 155.550 205.118 177.401 1.00 35.02 ATOM 136 CA ASN L 464 155.148 204.633 176.088 1.00 35.02 ATOM 137 C ASN L 464 154.472 205.711 175.265 1.00 35.02 ATOM 138 O ASN L 464 154.642 205.734 174.044 1.00 35.02 ATOM 139 CB ASN L 464 154.210 203.441 176.220 1.00 35.02 ATOM 140 CG ASN L 464 154.854 202.281 176.912 1.00 35.02 ATOM 141 OD1 ASN L 464 154.189 201.492 177.577 1.00 35.02 ATOM 142 ND2 ASN L 464 156.162 202.178 176.783 1.00 35.02 ATOM 143 N ARG L 465 153.720 206.605 175.895 1.00 41.77 ATOM 144 CA ARG L 465 153.006 207.649 175.179 1.00 41.77 ATOM 145 C ARG L 465 153.866 208.872 174.901 1.00 41.77 ATOM 146 O ARG L 465 153.470 209.715 174.097 1.00 41.77 ATOM 147 CB ARG L 465 151.757 208.053 175.961 1.00 41.77 ATOM 148 CG ARG L 465 150.738 208.825 175.162 1.00 41.77 ATOM 149 CD ARG L 465 149.766 209.545 176.070 1.00 41.77 ATOM 150 NE ARG L 465 150.465 210.282 177.113 1.00 41.77 ATOM 151 CZ ARG L 465 150.300 210.065 178.410 1.00 41.77 ATOM 152 NH1 ARG L 465 149.453 209.138 178.824 1.00 41.77 ATOM 153 NH2 ARG L 465 150.976 210.778 179.294 1.00 41.77 ATOM 154 N ILE L 466 155.024 208.991 175.543 1.00 40.96 ATOM 155 CA ILE L 466 155.951 210.074 175.252 1.00 40.96 ATOM 156 C ILE L 466 156.962 209.603 174.225 1.00 40.96 ATOM 157 O ILE L 466 157.399 210.386 173.379 1.00 40.96 ATOM 158 CB ILE L 466 156.669 210.570 176.516 1.00 40.96 ATOM 159 CG1 ILE L 466 156.008 211.837 177.051 1.00 40.96 ATOM 160 CG2 ILE L 466 158.127 210.816 176.223 1.00 40.96 ATOM 161 CD1 ILE L 466 154.512 211.753 177.118 1.00 40.96 ATOM 162 N SER L 467 157.359 208.337 174.300 1.00 48.27 ATOM 163 CA SER L 467 158.410 207.839 173.428 1.00 48.27 ATOM 164 C SER L 467 157.948 207.877 171.978 1.00 48.27 ATOM 165 O SER L 467 158.735 208.197 171.085 1.00 48.27 ATOM 166 CB SER L 467 158.823 206.422 173.830 1.00 48.27 ATOM 167 OG SER L 467 158.159 205.451 173.044 1.00 48.27 ATOM 168 N ARG L 468 156.673 207.567 171.736 1.00 51.16 ATOM 169 CA ARG L 468 156.145 207.641 170.380 1.00 51.16 ATOM 170 C ARG L 468 156.176 209.061 169.841 1.00 51.16 ATOM 171 O ARG L 468 156.482 209.268 168.662 1.00 51.16 ATOM 172 CB ARG L 468 154.724 207.091 170.340 1.00 51.16 ATOM 173 CG ARG L 468 154.648 205.620 170.662 1.00 51.16 ATOM 174 CD ARG L 468 153.279 205.046 170.356 1.00 51.16 ATOM 175 NE ARG L 468 152.341 205.221 171.460 1.00 51.16 ATOM 176 CZ ARG L 468 151.037 205.411 171.307 1.00 51.16 ATOM 177 NH1 ARG L 468 150.511 205.449 170.094 1.00 51.16 ATOM 178 NH2 ARG L 468 150.258 205.555 172.365 1.00 51.16 ATOM 179 N GLN L 469 155.858 210.046 170.676 1.00 46.50 ATOM 180 CA GLN L 469 155.950 211.434 170.246 1.00 46.50 ATOM 181 C GLN L 469 157.366 211.769 169.808 1.00 46.50 ATOM 182 O GLN L 469 157.586 212.254 168.695 1.00 46.50 ATOM 183 CB GLN L 469 155.516 212.367 171.372 1.00 46.50 ATOM 184 CG GLN L 469 154.143 212.101 171.915 1.00 46.50 ATOM 185 CD GLN L 469 153.819 213.007 173.078 1.00 46.50 ATOM 186 OE1 GLN L 469 154.144 214.192 173.063 1.00 46.50 ATOM 187 NE2 GLN L 469 153.201 212.449 174.109 1.00 46.50 ATOM 188 N MET L 470 158.345 211.497 170.670 1.00 48.66 ATOM 189 CA MET L 470 159.725 211.828 170.347 1.00 48.66 ATOM 190 C MET L 470 160.216 211.037 169.145 1.00 48.66 ATOM 191 O MET L 470 161.106 211.490 168.417 1.00 48.66 ATOM 192 CB MET L 470 160.613 211.567 171.555 1.00 48.66 ATOM 193 CG MET L 470 160.074 212.127 172.842 1.00 48.66 ATOM 194 SD MET L 470 161.303 212.047 174.147 1.00 48.66 ATOM 195 CE MET L 470 162.641 212.950 173.379 1.00 48.66 ATOM 196 N LEU L 471 159.652 209.853 168.923 1.00 42.66 ATOM 197 CA LEU L 471 160.091 209.029 167.806 1.00 42.66 ATOM 198 C LEU L 471 159.567 209.571 166.489 1.00 42.66 ATOM 199 O LEU L 471 160.320 209.687 165.519 1.00 42.66 ATOM 200 CB LEU L 471 159.649 207.588 168.025 1.00 42.66 ATOM 201 CG LEU L 471 159.774 206.569 166.908 1.00 42.66 ATOM 202 CD1 LEU L 471 160.088 205.221 167.510 1.00 42.66 ATOM 203 CD2 LEU L 471 158.475 206.506 166.160 1.00 42.66 ATOM 204 N GLN L 472 158.288 209.927 166.433 1.00 42.68 ATOM 205 CA GLN L 472 157.767 210.532 165.214 1.00 42.68 ATOM 206 C GLN L 472 158.050 212.023 165.123 1.00 42.68 ATOM 207 O GLN L 472 157.622 212.658 164.156 1.00 42.68 ATOM 208 CB GLN L 472 156.269 210.281 165.088 1.00 42.68 ATOM 209 CG GLN L 472 155.964 209.050 164.282 1.00 42.68 ATOM 210 CD GLN L 472 154.488 208.855 164.056 1.00 42.68 ATOM 211 OE1 GLN L 472 153.668 209.296 164.859 1.00 42.68 ATOM 212 NE2 GLN L 472 154.137 208.167 162.974 1.00 42.68 ATOM 213 N GLU L 473 158.749 212.593 166.102 1.00 47.20 ATOM 214 CA GLU L 473 159.184 213.982 166.037 1.00 47.20 ATOM 215 C GLU L 473 160.667 214.071 165.698 1.00 47.20 ATOM 216 O GLU L 473 161.076 214.915 164.898 1.00 47.20 ATOM 217 CB GLU L 473 158.880 214.687 167.359 1.00 47.20 ATOM 218 CG GLU L 473 157.403 214.979 167.557 1.00 47.20 ATOM 219 CD GLU L 473 157.096 215.588 168.910 1.00 47.20 ATOM 220 OE1 GLU L 473 158.051 215.891 169.657 1.00 47.20 ATOM 221 OE2 GLU L 473 155.899 215.758 169.223 1.00 47.20 ATOM 222 N MET L 474 161.482 213.210 166.301 1.00 47.92 ATOM 223 CA MET L 474 162.898 213.126 165.978 1.00 47.92 ATOM 224 C MET L 474 163.207 212.039 164.962 1.00 47.92 ATOM 225 O MET L 474 164.317 212.006 164.426 1.00 47.92 ATOM 226 CB MET L 474 163.722 212.902 167.245 1.00 47.92 ATOM 227 CG MET L 474 163.991 214.181 168.022 1.00 47.92 ATOM 228 SD MET L 474 164.769 215.461 167.015 1.00 47.92 ATOM 229 CE MET L 474 166.294 214.656 166.548 1.00 47.92 ATOM 230 N GLY L 475 162.259 211.155 164.680 1.00 41.67 ATOM 231 CA GLY L 475 162.436 210.203 163.605 1.00 41.67 ATOM 232 C GLY L 475 163.033 208.868 163.988 1.00 41.67 ATOM 233 O GLY L 475 162.367 207.841 163.864 1.00 41.67 ATOM 234 N ARG L 476 164.293 208.851 164.415 1.00 49.00 ATOM 235 CA ARG L 476 164.949 207.580 164.689 1.00 49.00 ATOM 236 C ARG L 476 164.331 206.820 165.860 1.00 49.00 ATOM 237 O ARG L 476 163.615 205.839 165.650 1.00 49.00 ATOM 238 CB ARG L 476 166.431 207.824 164.958 1.00 49.00 ATOM 239 CG ARG L 476 166.674 209.052 165.795 1.00 49.00 ATOM 240 CD ARG L 476 167.941 208.944 166.603 1.00 49.00 ATOM 241 NE ARG L 476 167.799 209.643 167.877 1.00 49.00 ATOM 242 CZ ARG L 476 167.625 210.953 168.005 1.00 49.00 ATOM 243 NH1 ARG L 476 167.599 211.734 166.935 1.00 49.00 ATOM 244 NH2 ARG L 476 167.496 211.486 169.211 1.00 49.00 ATOM 245 N GLU L 477 164.585 207.273 167.091 1.00 50.30 ATOM 246 CA GLU L 477 163.936 206.802 168.309 1.00 50.30 ATOM 247 C GLU L 477 164.535 207.536 169.505 1.00 50.30 ATOM 248 O GLU L 477 165.695 207.963 169.451 1.00 50.30 ATOM 249 CB GLU L 477 164.071 205.291 168.471 1.00 50.30 ATOM 250 CG GLU L 477 165.481 204.813 168.661 1.00 50.30 ATOM 251 CD GLU L 477 165.832 204.660 170.121 1.00 50.30 ATOM 252 OE1 GLU L 477 164.944 204.913 170.965 1.00 50.30 ATOM 253 OE2 GLU L 477 166.990 204.293 170.423 1.00 50.30 ATOM 254 N PRO L 478 163.800 207.672 170.611 1.00 50.50 ATOM 255 CA PRO L 478 164.251 208.523 171.721 1.00 50.50 ATOM 256 C PRO L 478 165.118 207.777 172.724 1.00 50.50 ATOM 257 O PRO L 478 164.860 206.618 173.059 1.00 50.50 ATOM 258 CB PRO L 478 162.932 208.997 172.345 1.00 50.50 ATOM 259 CG PRO L 478 161.957 207.931 172.017 1.00 50.50 ATOM 260 CD PRO L 478 162.394 207.260 170.756 1.00 50.50 ATOM 261 N THR L 479 166.159 208.448 173.202 1.00 47.83 ATOM 262 CA THR L 479 167.077 207.882 174.175 1.00 47.83 ATOM 263 C THR L 479 166.586 208.142 175.600 1.00 47.83 ATOM 264 O THR L 479 165.750 209.019 175.825 1.00 47.83 ATOM 265 CB THR L 479 168.459 208.497 173.983 1.00 47.83 ATOM 266 OG1 THR L 479 169.387 207.951 174.924 1.00 47.83 ATOM 267 CG2 THR L 479 168.387 209.997 174.171 1.00 47.83 TER