HEADER VIRAL PROTEIN/DNA 31-DEC-69 6PUT TITLE Structure of HIV cleaved synaptic complex (CSC) intasome bound with TITLE 2 calcium COMPND MOL_ID: 1; COMPND 2 MOLECULE: Chimeric Sso7d and HIV-1 integrase; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 322 REMARK 465 ARG A 323 REMARK 465 ASP A 324 REMARK 465 SER A 325 REMARK 465 ARG A 326 REMARK 465 ASP A 327 REMARK 465 PRO A 328 REMARK 465 VAL A 329 REMARK 465 TRP A 330 REMARK 465 LYS A 331 REMARK 465 GLY A 332 REMARK 465 PRO A 333 REMARK 465 ALA A 334 REMARK 465 ASP A 348 REMARK 465 ASN A 349 REMARK 465 SER A 350 REMARK 465 ASP A 351 DBREF 6PUT A -74 -11 UNP P39476 DN7D_SACS2 1 64 DBREF 6PUT A 1 288 UNP Q76353 Q76353_9HIV 1 288 SEQRES 1 A 48 GLN LYS GLN ILE THR LYS ILE GLN ASN PHE ARG VAL TYR SEQRES 2 A 48 TYR ARG ASP SER ARG ASP PRO VAL TRP LYS GLY PRO ALA SEQRES 3 A 48 LYS LEU LEU TRP LYS GLY GLU GLY ALA VAL VAL ILE GLN SEQRES 4 A 48 ASP ASN SER ASP ILE LYS VAL VAL PRO ATOM 1 N GLN A 214 131.686 184.244 150.169 1.00 39.71 ATOM 2 CA GLN A 214 130.571 183.385 149.795 1.00 38.93 ATOM 3 C GLN A 214 129.233 184.042 150.100 1.00 41.29 ATOM 4 O GLN A 214 128.244 183.765 149.414 1.00 49.09 ATOM 5 CB GLN A 214 130.687 182.040 150.508 1.00 43.36 ATOM 6 CG GLN A 214 129.838 180.934 149.907 1.00 49.77 ATOM 7 CD GLN A 214 130.101 180.723 148.432 1.00 53.68 ATOM 8 OE1 GLN A 214 131.150 180.217 148.043 1.00 58.35 ATOM 9 NE2 GLN A 214 129.140 181.097 147.602 1.00 45.36 ATOM 10 N LYS A 215 129.180 184.919 151.108 1.00 42.41 ATOM 11 CA LYS A 215 127.958 185.677 151.354 1.00 49.27 ATOM 12 C LYS A 215 127.686 186.668 150.232 1.00 48.22 ATOM 13 O LYS A 215 126.528 186.893 149.864 1.00 50.27 ATOM 14 CB LYS A 215 128.048 186.406 152.692 1.00 48.10 ATOM 15 CG LYS A 215 126.701 186.692 153.320 1.00 30.51 ATOM 16 CD LYS A 215 126.828 187.616 154.515 1.00 35.09 ATOM 17 CE LYS A 215 126.703 189.070 154.098 1.00 42.93 ATOM 18 NZ LYS A 215 126.453 189.960 155.265 1.00 29.61 ATOM 19 N GLN A 216 128.738 187.272 149.676 1.00 44.79 ATOM 20 CA GLN A 216 128.544 188.169 148.543 1.00 47.54 ATOM 21 C GLN A 216 128.293 187.419 147.242 1.00 44.32 ATOM 22 O GLN A 216 127.637 187.962 146.349 1.00 48.41 ATOM 23 CB GLN A 216 129.747 189.096 148.381 1.00 49.59 ATOM 24 CG GLN A 216 129.926 190.079 149.518 1.00 53.62 ATOM 25 CD GLN A 216 128.741 191.010 149.675 1.00 55.16 ATOM 26 OE1 GLN A 216 127.987 190.915 150.643 1.00 58.81 ATOM 27 NE2 GLN A 216 128.568 191.914 148.717 1.00 48.92 ATOM 28 N ILE A 217 128.801 186.194 147.108 1.00 40.13 ATOM 29 CA ILE A 217 128.550 185.413 145.900 1.00 37.54 ATOM 30 C ILE A 217 127.125 184.867 145.896 1.00 43.83 ATOM 31 O ILE A 217 126.429 184.934 144.876 1.00 46.25 ATOM 32 CB ILE A 217 129.598 184.289 145.776 1.00 37.32 ATOM 33 CG1 ILE A 217 130.929 184.846 145.287 1.00 44.44 ATOM 34 CG2 ILE A 217 129.150 183.200 144.819 1.00 39.26 ATOM 35 CD1 ILE A 217 132.048 183.838 145.328 1.00 48.71 ATOM 36 N THR A 218 126.667 184.357 147.046 1.00 45.32 ATOM 37 CA THR A 218 125.383 183.666 147.145 1.00 48.20 ATOM 38 C THR A 218 124.208 184.599 146.867 1.00 53.00 ATOM 39 O THR A 218 123.226 184.189 146.236 1.00 69.84 ATOM 40 CB THR A 218 125.266 183.035 148.537 1.00 47.39 ATOM 41 OG1 THR A 218 126.350 182.119 148.730 1.00 50.66 ATOM 42 CG2 THR A 218 123.964 182.270 148.709 1.00 43.66 ATOM 43 N LYS A 219 124.321 185.872 147.248 1.00 50.28 ATOM 44 CA LYS A 219 123.242 186.825 147.013 1.00 59.06 ATOM 45 C LYS A 219 123.161 187.297 145.566 1.00 57.60 ATOM 46 O LYS A 219 122.271 188.092 145.247 1.00 58.47 ATOM 47 CB LYS A 219 123.392 188.033 147.938 1.00 54.68 ATOM 48 CG LYS A 219 124.586 188.912 147.629 1.00 55.12 ATOM 49 CD LYS A 219 124.724 190.019 148.658 1.00 55.31 ATOM 50 CE LYS A 219 123.622 191.052 148.506 1.00 68.25 ATOM 51 NZ LYS A 219 123.797 192.197 149.440 1.00 79.53 ATOM 52 N ILE A 220 124.060 186.849 144.693 1.00 57.53 ATOM 53 CA ILE A 220 123.979 187.168 143.276 1.00 59.54 ATOM 54 C ILE A 220 123.516 185.984 142.433 1.00 64.83 ATOM 55 O ILE A 220 122.565 186.140 141.651 1.00 73.46 ATOM 56 CB ILE A 220 125.327 187.701 142.750 1.00 58.15 ATOM 57 CG1 ILE A 220 125.767 188.918 143.561 1.00 59.06 ATOM 58 CG2 ILE A 220 125.226 188.063 141.282 1.00 53.21 ATOM 59 CD1 ILE A 220 124.800 190.071 143.496 1.00 50.35 ATOM 60 N GLN A 221 124.133 184.813 142.574 1.00 60.37 ATOM 61 CA GLN A 221 123.768 183.622 141.809 1.00 66.82 ATOM 62 C GLN A 221 122.504 183.029 142.421 1.00 71.94 ATOM 63 O GLN A 221 122.542 182.460 143.514 1.00 69.74 ATOM 64 CB GLN A 221 124.907 182.611 141.814 1.00 65.58 ATOM 65 CG GLN A 221 126.179 183.115 141.176 1.00 70.08 ATOM 66 CD GLN A 221 127.146 181.998 140.853 1.00 80.02 ATOM 67 OE1 GLN A 221 127.339 181.079 141.647 1.00 78.23 ATOM 68 NE2 GLN A 221 127.768 182.075 139.683 1.00 82.86 ATOM 69 N ASN A 222 121.383 183.158 141.716 1.00 74.33 ATOM 70 CA ASN A 222 120.088 182.677 142.198 1.00 74.11 ATOM 71 C ASN A 222 119.421 181.797 141.144 1.00 87.54 ATOM 72 O ASN A 222 118.246 181.960 140.814 1.00 86.78 ATOM 73 CB ASN A 222 119.173 183.838 142.589 1.00 62.57 ATOM 74 CG ASN A 222 119.827 184.808 143.556 1.00 61.00 ATOM 75 OD1 ASN A 222 120.586 184.412 144.439 1.00 61.16 ATOM 76 ND2 ASN A 222 119.531 186.092 143.392 1.00 56.54 ATOM 77 N PHE A 223 120.173 180.839 140.609 1.00 93.66 ATOM 78 CA PHE A 223 119.692 179.943 139.566 1.00 93.17 ATOM 79 C PHE A 223 119.223 178.635 140.188 1.00 90.52 ATOM 80 O PHE A 223 119.734 178.222 141.233 1.00 88.73 ATOM 81 CB PHE A 223 120.788 179.678 138.533 1.00 85.79 ATOM 82 CG PHE A 223 121.371 180.925 137.936 1.00 84.16 ATOM 83 CD1 PHE A 223 120.722 181.580 136.901 1.00 83.74 ATOM 84 CD2 PHE A 223 122.568 181.443 138.405 1.00 87.37 ATOM 85 CE1 PHE A 223 121.255 182.732 136.345 1.00 86.30 ATOM 86 CE2 PHE A 223 123.108 182.593 137.854 1.00 85.76 ATOM 87 CZ PHE A 223 122.450 183.238 136.823 1.00 81.39 ATOM 88 N ARG A 224 118.247 177.990 139.548 1.00 82.92 ATOM 89 CA ARG A 224 117.711 176.701 139.984 1.00 78.68 ATOM 90 C ARG A 224 118.067 175.664 138.925 1.00 82.90 ATOM 91 O ARG A 224 117.451 175.620 137.857 1.00 87.64 ATOM 92 CB ARG A 224 116.201 176.776 140.200 1.00 76.00 ATOM 93 CG ARG A 224 115.670 175.825 141.271 1.00 81.20 ATOM 94 CD ARG A 224 115.258 174.470 140.697 1.00 83.70 ATOM 95 NE ARG A 224 114.581 173.634 141.687 1.00 79.58 ATOM 96 CZ ARG A 224 114.360 172.332 141.540 1.00 70.99 ATOM 97 NH1 ARG A 224 114.768 171.709 140.446 1.00 71.09 ATOM 98 NH2 ARG A 224 113.736 171.651 142.489 1.00 55.77 ATOM 99 N VAL A 225 119.059 174.825 139.223 1.00 75.46 ATOM 100 CA VAL A 225 119.520 173.843 138.251 1.00 74.46 ATOM 101 C VAL A 225 118.747 172.539 138.407 1.00 74.99 ATOM 102 O VAL A 225 118.650 171.971 139.501 1.00 72.12 ATOM 103 CB VAL A 225 121.034 173.615 138.408 1.00 71.82 ATOM 104 CG1 VAL A 225 121.521 172.535 137.458 1.00 69.47 ATOM 105 CG2 VAL A 225 121.785 174.912 138.171 1.00 81.16 ATOM 106 N TYR A 226 118.197 172.055 137.298 1.00 78.00 ATOM 107 CA TYR A 226 117.489 170.780 137.281 1.00 76.22 ATOM 108 C TYR A 226 118.443 169.642 136.922 1.00 69.43 ATOM 109 O TYR A 226 118.202 168.480 137.254 1.00 46.84 ATOM 110 CB TYR A 226 116.325 170.823 136.291 1.00 71.55 ATOM 111 CG TYR A 226 115.109 171.567 136.791 1.00 71.93 ATOM 112 CD1 TYR A 226 113.991 170.879 137.243 1.00 74.07 ATOM 113 CD2 TYR A 226 115.073 172.957 136.799 1.00 70.74 ATOM 114 CE1 TYR A 226 112.872 171.554 137.699 1.00 76.66 ATOM 115 CE2 TYR A 226 113.961 173.642 137.254 1.00 71.70 ATOM 116 CZ TYR A 226 112.863 172.934 137.702 1.00 76.68 ATOM 117 OH TYR A 226 111.751 173.606 138.154 1.00 75.26 ATOM 118 N LYS A 240 119.157 174.250 143.792 1.00 67.31 ATOM 119 CA LYS A 240 119.880 175.496 144.025 1.00 65.82 ATOM 120 C LYS A 240 121.322 175.393 143.550 1.00 64.09 ATOM 121 O LYS A 240 122.051 174.489 143.948 1.00 56.95 ATOM 122 CB LYS A 240 119.843 175.871 145.505 1.00 57.71 ATOM 123 CG LYS A 240 120.392 177.250 145.800 1.00 52.81 ATOM 124 CD LYS A 240 120.103 177.665 147.230 1.00 53.70 ATOM 125 CE LYS A 240 120.574 179.083 147.493 1.00 67.07 ATOM 126 NZ LYS A 240 120.292 179.511 148.889 1.00 65.58 ATOM 127 N LEU A 241 121.726 176.329 142.696 1.00 67.80 ATOM 128 CA LEU A 241 123.062 176.315 142.120 1.00 62.04 ATOM 129 C LEU A 241 124.097 176.726 143.156 1.00 61.33 ATOM 130 O LEU A 241 124.014 177.814 143.733 1.00 65.88 ATOM 131 CB LEU A 241 123.140 177.253 140.919 1.00 69.50 ATOM 132 CG LEU A 241 124.567 177.508 140.434 1.00 65.93 ATOM 133 CD1 LEU A 241 125.008 176.387 139.535 1.00 57.69 ATOM 134 CD2 LEU A 241 124.695 178.840 139.725 1.00 75.08 ATOM 135 N LEU A 242 125.078 175.856 143.383 1.00 56.50 ATOM 136 CA LEU A 242 126.190 176.177 144.265 1.00 49.09 ATOM 137 C LEU A 242 127.403 176.644 143.474 1.00 56.56 ATOM 138 O LEU A 242 127.980 177.691 143.781 1.00 61.50 ATOM 139 CB LEU A 242 126.552 174.965 145.125 1.00 44.53 ATOM 140 CG LEU A 242 126.057 174.888 146.564 1.00 53.01 ATOM 141 CD1 LEU A 242 124.577 175.185 146.670 1.00 65.36 ATOM 142 CD2 LEU A 242 126.356 173.511 147.105 1.00 54.93 ATOM 143 N TRP A 243 127.795 175.893 142.448 1.00 61.18 ATOM 144 CA TRP A 243 128.986 176.259 141.682 1.00 57.62 ATOM 145 C TRP A 243 128.858 175.728 140.267 1.00 61.39 ATOM 146 O TRP A 243 128.777 174.515 140.068 1.00 63.84 ATOM 147 CB TRP A 243 130.248 175.714 142.342 1.00 48.52 ATOM 148 CG TRP A 243 131.510 176.121 141.648 1.00 47.92 ATOM 149 CD1 TRP A 243 132.186 177.293 141.801 1.00 58.65 ATOM 150 CD2 TRP A 243 132.251 175.353 140.695 1.00 52.22 ATOM 151 NE1 TRP A 243 133.301 177.305 141.001 1.00 61.23 ATOM 152 CE2 TRP A 243 133.363 176.124 140.312 1.00 57.83 ATOM 153 CE3 TRP A 243 132.081 174.089 140.128 1.00 59.30 ATOM 154 CZ2 TRP A 243 134.298 175.675 139.388 1.00 65.16 ATOM 155 CZ3 TRP A 243 133.009 173.645 139.213 1.00 62.00 ATOM 156 CH2 TRP A 243 134.105 174.435 138.853 1.00 64.22 ATOM 157 N LYS A 244 128.869 176.620 139.288 1.00 60.40 ATOM 158 CA LYS A 244 128.796 176.217 137.894 1.00 64.69 ATOM 159 C LYS A 244 130.178 176.247 137.257 1.00 68.13 ATOM 160 O LYS A 244 130.893 177.250 137.308 1.00 65.80 ATOM 161 CB LYS A 244 127.842 177.122 137.112 1.00 63.82 ATOM 162 CG LYS A 244 127.677 176.721 135.655 1.00 60.14 ATOM 163 CD LYS A 244 126.665 177.601 134.947 1.00 55.22 ATOM 164 CE LYS A 244 127.238 178.978 134.668 1.00 52.81 ATOM 165 NZ LYS A 244 126.296 179.817 133.883 1.00 53.01 ATOM 166 N GLY A 245 130.543 175.134 136.650 1.00 71.09 ATOM 167 CA GLY A 245 131.772 175.036 135.883 1.00 77.20 ATOM 168 C GLY A 245 131.447 174.583 134.482 1.00 90.28 ATOM 169 O GLY A 245 130.276 174.417 134.125 1.00 89.73 ATOM 170 N GLU A 246 132.486 174.370 133.679 1.00 91.95 ATOM 171 CA GLU A 246 132.312 173.947 132.297 1.00 91.89 ATOM 172 C GLU A 246 132.259 172.439 132.127 1.00 90.90 ATOM 173 O GLU A 246 131.785 171.964 131.093 1.00 90.36 ATOM 174 CB GLU A 246 133.431 174.527 131.418 1.00 92.77 ATOM 175 CG GLU A 246 134.855 174.192 131.859 1.00 94.05 ATOM 176 CD GLU A 246 135.398 172.919 131.236 1.00 94.96 ATOM 177 OE1 GLU A 246 134.849 172.476 130.205 1.00 98.33 ATOM 178 OE2 GLU A 246 136.374 172.363 131.780 1.00 87.36 ATOM 179 N GLY A 247 132.732 171.680 133.110 1.00 85.70 ATOM 180 CA GLY A 247 132.677 170.236 133.037 1.00 87.21 ATOM 181 C GLY A 247 131.618 169.649 133.942 1.00 89.90 ATOM 182 O GLY A 247 131.067 168.582 133.658 1.00 92.28 ATOM 183 N ALA A 248 131.319 170.341 135.037 1.00 85.12 ATOM 184 CA ALA A 248 130.352 169.844 136.003 1.00 74.03 ATOM 185 C ALA A 248 129.629 171.027 136.625 1.00 64.45 ATOM 186 O ALA A 248 129.974 172.187 136.393 1.00 60.86 ATOM 187 CB ALA A 248 131.026 168.988 137.078 1.00 59.12 ATOM 188 N VAL A 249 128.610 170.713 137.416 1.00 58.50 ATOM 189 CA VAL A 249 127.836 171.712 138.140 1.00 52.39 ATOM 190 C VAL A 249 127.470 171.140 139.505 1.00 56.94 ATOM 191 O VAL A 249 126.947 170.026 139.606 1.00 65.26 ATOM 192 CB VAL A 249 126.600 172.174 137.331 1.00 49.04 ATOM 193 CG1 VAL A 249 125.780 171.005 136.804 1.00 53.28 ATOM 194 CG2 VAL A 249 125.722 173.059 138.167 1.00 47.77 ATOM 195 N VAL A 250 127.799 171.872 140.562 1.00 54.08 ATOM 196 CA VAL A 250 127.549 171.442 141.930 1.00 51.00 ATOM 197 C VAL A 250 126.295 172.148 142.411 1.00 51.52 ATOM 198 O VAL A 250 126.202 173.380 142.328 1.00 61.99 ATOM 199 CB VAL A 250 128.743 171.745 142.845 1.00 51.01 ATOM 200 CG1 VAL A 250 128.443 171.312 144.262 1.00 50.08 ATOM 201 CG2 VAL A 250 129.979 171.051 142.326 1.00 47.53 ATOM 202 N ILE A 251 125.331 171.364 142.897 1.00 44.09 ATOM 203 CA ILE A 251 124.048 171.850 143.377 1.00 49.35 ATOM 204 C ILE A 251 123.813 171.303 144.781 1.00 55.08 ATOM 205 O ILE A 251 124.597 170.510 145.299 1.00 57.51 ATOM 206 CB ILE A 251 122.883 171.445 142.451 1.00 46.01 ATOM 207 CG1 ILE A 251 122.759 169.925 142.403 1.00 45.64 ATOM 208 CG2 ILE A 251 123.078 171.996 141.059 1.00 58.62 ATOM 209 CD1 ILE A 251 121.504 169.442 141.737 1.00 57.05 ATOM 210 N GLN A 252 122.709 171.725 145.387 1.00 58.30 ATOM 211 CA GLN A 252 122.278 171.155 146.658 1.00 63.87 ATOM 212 C GLN A 252 120.771 170.920 146.666 1.00 61.49 ATOM 213 O GLN A 252 120.046 171.447 145.824 1.00 54.56 ATOM 214 CB GLN A 252 122.669 172.055 147.829 1.00 58.22 ATOM 215 CG GLN A 252 121.700 173.187 148.110 1.00 61.16 ATOM 216 CD GLN A 252 122.020 173.906 149.403 1.00 57.11 ATOM 217 OE1 GLN A 252 122.956 173.539 150.111 1.00 55.43 ATOM 218 NE2 GLN A 252 121.240 174.931 149.722 1.00 55.28 ATOM 219 N ILE A 257 124.063 167.966 148.502 1.00 44.80 ATOM 220 CA ILE A 257 125.053 168.578 147.626 1.00 55.56 ATOM 221 C ILE A 257 125.607 167.541 146.658 1.00 58.70 ATOM 222 O ILE A 257 126.336 166.634 147.054 1.00 70.78 ATOM 223 CB ILE A 257 126.176 169.231 148.436 1.00 55.71 ATOM 224 CG1 ILE A 257 125.597 170.314 149.344 1.00 63.57 ATOM 225 CG2 ILE A 257 127.213 169.827 147.513 1.00 55.48 ATOM 226 CD1 ILE A 257 126.592 170.914 150.284 1.00 55.54 ATOM 227 N LYS A 258 125.255 167.686 145.385 1.00 56.77 ATOM 228 CA LYS A 258 125.599 166.717 144.357 1.00 58.87 ATOM 229 C LYS A 258 126.404 167.383 143.252 1.00 62.40 ATOM 230 O LYS A 258 126.276 168.589 143.013 1.00 66.65 ATOM 231 CB LYS A 258 124.342 166.076 143.770 1.00 53.30 ATOM 232 CG LYS A 258 123.571 165.227 144.761 1.00 44.97 ATOM 233 CD LYS A 258 122.350 164.600 144.124 1.00 35.43 ATOM 234 CE LYS A 258 121.636 163.692 145.106 1.00 28.80 ATOM 235 NZ LYS A 258 121.050 164.462 146.236 1.00 24.10 ATOM 236 N VAL A 259 127.234 166.590 142.583 1.00 53.69 ATOM 237 CA VAL A 259 128.069 167.068 141.484 1.00 54.48 ATOM 238 C VAL A 259 127.504 166.450 140.210 1.00 54.41 ATOM 239 O VAL A 259 127.870 165.345 139.807 1.00 55.01 ATOM 240 CB VAL A 259 129.540 166.720 141.695 1.00 49.40 ATOM 241 CG1 VAL A 259 130.396 167.356 140.616 1.00 50.29 ATOM 242 CG2 VAL A 259 129.994 167.168 143.072 1.00 51.68 ATOM 243 N VAL A 260 126.599 167.175 139.567 1.00 56.89 ATOM 244 CA VAL A 260 125.995 166.718 138.312 1.00 55.67 ATOM 245 C VAL A 260 126.985 166.941 137.176 1.00 57.36 ATOM 246 O VAL A 260 127.609 168.015 137.112 1.00 57.32 ATOM 247 CB VAL A 260 124.687 167.472 138.061 1.00 49.08 ATOM 248 CG1 VAL A 260 123.923 166.878 136.891 1.00 54.24 ATOM 249 CG2 VAL A 260 123.838 167.473 139.319 1.00 46.98 ATOM 250 N PRO A 261 127.184 165.971 136.268 1.00 56.28 ATOM 251 CA PRO A 261 128.079 166.164 135.120 1.00 57.47 ATOM 252 C PRO A 261 127.574 167.199 134.117 1.00 54.86 ATOM 253 O PRO A 261 126.418 167.610 134.188 1.00 51.01 ATOM 254 CB PRO A 261 128.126 164.776 134.474 1.00 58.76 ATOM 255 CG PRO A 261 127.744 163.835 135.555 1.00 53.25 ATOM 256 CD PRO A 261 126.745 164.570 136.388 1.00 56.32 TER