HEADER LIGASE 31-DEC-69 6Q89 TITLE Neisseria gonorrhoeae Leucyl-tRNA Synthetase in Complex with the TITLE 2 Intermediate Analog 5'-O-(N-(L-Leucyl)-Sulfamoyl)Adenosine COMPND MOL_ID: 1; COMPND 2 MOLECULE: Leucine--tRNA ligase; COMPND 3 CHAIN: A; COMPND 4 MUTATION: YES; COMPND 5 EC: 6.1.1.4; COMPND 6 FRAGMENT: Leucyl-tRNA ; COMPND 7 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.21 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 591 REMARK 465 GLU A 592 REMARK 465 ASN A 593 REMARK 465 ASP A 594 REMARK 465 LYS A 595 REMARK 465 GLY A 596 REMARK 465 GLY A 597 REMARK 465 LYS A 598 REMARK 465 THR A 609 REMARK 465 PHE A 610 REMARK 465 ASP A 611 REMARK 465 ASP A 612 REMARK 465 LYS A 613 REMARK 465 GLY A 614 REMARK 465 ARG A 615 REMARK 465 PRO A 616 REMARK 465 VAL A 617 REMARK 465 SER A 618 REMARK 465 ALA A 619 REMARK 465 VAL A 620 REMARK 465 LEU A 621 REMARK 465 LYS A 622 REMARK 465 ALA A 623 DBREF 6Q89 A 1 876 UNP A0A1D3HN A0A1D3HNX6_ 3 878 SEQRES 1 A 51 VAL VAL CYS GLU THR TYR TYR ARG GLU ASN ASP LYS GLY SEQRES 2 A 51 GLY LYS ASP TRP ILE ASN PRO ALA ASP VAL GLU LEU THR SEQRES 3 A 51 PHE ASP ASP LYS GLY ARG PRO VAL SER ALA VAL LEU LYS SEQRES 4 A 51 ALA ASP GLY LEU PRO VAL VAL ILE SER GLY THR GLU ATOM 1 N VAL A 583 -16.182 -8.819 -27.782 1.00 32.80 ATOM 2 CA VAL A 583 -16.795 -10.054 -27.310 1.00 39.98 ATOM 3 C VAL A 583 -16.925 -9.958 -25.798 1.00 42.01 ATOM 4 O VAL A 583 -15.960 -9.615 -25.105 1.00 43.18 ATOM 5 CB VAL A 583 -15.972 -11.281 -27.733 1.00 40.78 ATOM 6 CG1 VAL A 583 -16.632 -12.545 -27.236 1.00 37.45 ATOM 7 CG2 VAL A 583 -15.824 -11.331 -29.256 1.00 37.47 ATOM 8 N VAL A 584 -18.128 -10.219 -25.283 1.00 44.14 ATOM 9 CA VAL A 584 -18.395 -10.163 -23.851 1.00 42.02 ATOM 10 C VAL A 584 -18.794 -11.555 -23.369 1.00 50.85 ATOM 11 O VAL A 584 -19.279 -12.384 -24.139 1.00 43.49 ATOM 12 CB VAL A 584 -19.486 -9.128 -23.508 1.00 41.36 ATOM 13 CG1 VAL A 584 -19.093 -7.737 -24.059 1.00 37.91 ATOM 14 CG2 VAL A 584 -20.829 -9.558 -24.079 1.00 40.44 ATOM 15 N CYS A 585 -18.603 -11.795 -22.068 1.00 47.79 ATOM 16 CA CYS A 585 -18.839 -13.106 -21.483 1.00 51.00 ATOM 17 C CYS A 585 -19.173 -12.972 -19.999 1.00 54.59 ATOM 18 O CYS A 585 -18.661 -12.085 -19.307 1.00 51.15 ATOM 19 CB CYS A 585 -17.611 -14.011 -21.660 1.00 52.79 ATOM 20 SG CYS A 585 -17.869 -15.706 -21.139 1.00 57.18 ATOM 21 N GLU A 586 -20.015 -13.885 -19.514 1.00 53.13 ATOM 22 CA GLU A 586 -20.357 -13.932 -18.097 1.00 62.02 ATOM 23 C GLU A 586 -19.132 -14.267 -17.246 1.00 64.06 ATOM 24 O GLU A 586 -18.262 -15.039 -17.654 1.00 67.01 ATOM 25 CB GLU A 586 -21.461 -14.961 -17.850 1.00 69.70 ATOM 26 CG GLU A 586 -22.183 -14.741 -16.541 1.00 80.84 ATOM 27 CD GLU A 586 -23.233 -15.785 -16.277 1.00 96.37 ATOM 28 OE1 GLU A 586 -23.457 -16.114 -15.092 1.00102.70 ATOM 29 OE2 GLU A 586 -23.838 -16.277 -17.253 1.00102.95 ATOM 30 N THR A 587 -19.065 -13.660 -16.057 1.00 64.62 ATOM 31 CA THR A 587 -17.975 -13.825 -15.101 1.00 64.64 ATOM 32 C THR A 587 -18.455 -14.599 -13.877 1.00 72.17 ATOM 33 O THR A 587 -19.655 -14.805 -13.678 1.00 69.40 ATOM 34 CB THR A 587 -17.414 -12.468 -14.660 1.00 65.23 ATOM 35 OG1 THR A 587 -18.425 -11.755 -13.937 1.00 67.76 ATOM 36 CG2 THR A 587 -16.947 -11.638 -15.860 1.00 56.22 ATOM 37 N TYR A 588 -17.493 -15.029 -13.050 1.00 79.30 ATOM 38 CA TYR A 588 -17.757 -15.899 -11.907 1.00 80.50 ATOM 39 C TYR A 588 -16.648 -15.756 -10.867 1.00 88.62 ATOM 40 O TYR A 588 -15.477 -15.615 -11.223 1.00 89.21 ATOM 41 CB TYR A 588 -17.843 -17.380 -12.317 1.00 74.49 ATOM 42 CG TYR A 588 -18.628 -17.700 -13.574 1.00 74.40 ATOM 43 CD1 TYR A 588 -19.942 -18.143 -13.497 1.00 73.75 ATOM 44 CD2 TYR A 588 -18.045 -17.593 -14.837 1.00 75.63 ATOM 45 CE1 TYR A 588 -20.661 -18.452 -14.636 1.00 71.46 ATOM 46 CE2 TYR A 588 -18.760 -17.893 -15.983 1.00 75.31 ATOM 47 CZ TYR A 588 -20.069 -18.328 -15.873 1.00 75.28 ATOM 48 OH TYR A 588 -20.797 -18.636 -17.005 1.00 77.03 ATOM 49 N TYR A 589 -17.014 -15.843 -9.588 1.00 97.51 ATOM 50 CA TYR A 589 -16.016 -15.925 -8.515 1.00100.04 ATOM 51 C TYR A 589 -16.378 -16.972 -7.458 1.00 98.67 ATOM 52 O TYR A 589 -15.893 -16.912 -6.326 1.00 98.92 ATOM 53 CB TYR A 589 -15.818 -14.560 -7.849 1.00101.10 ATOM 54 CG TYR A 589 -17.076 -13.937 -7.314 1.00102.34 ATOM 55 CD1 TYR A 589 -17.709 -14.457 -6.195 1.00100.63 ATOM 56 CD2 TYR A 589 -17.629 -12.820 -7.922 1.00102.70 ATOM 57 CE1 TYR A 589 -18.855 -13.891 -5.703 1.00100.90 ATOM 58 CE2 TYR A 589 -18.783 -12.245 -7.434 1.00103.51 ATOM 59 CZ TYR A 589 -19.394 -12.791 -6.325 1.00101.89 ATOM 60 OH TYR A 589 -20.543 -12.235 -5.825 1.00100.29 ATOM 61 N ASP A 598 -11.145 -13.375 -6.045 1.00 68.39 ATOM 62 CA ASP A 598 -10.940 -14.730 -6.550 1.00 76.43 ATOM 63 C ASP A 598 -11.850 -15.011 -7.751 1.00 87.30 ATOM 64 O ASP A 598 -12.973 -15.480 -7.582 1.00 90.89 ATOM 65 CB ASP A 598 -11.188 -15.764 -5.445 1.00 81.06 ATOM 66 N TRP A 599 -11.342 -14.746 -8.961 1.00 86.31 ATOM 67 CA TRP A 599 -12.128 -14.758 -10.195 1.00 80.60 ATOM 68 C TRP A 599 -11.929 -16.074 -10.948 1.00 73.14 ATOM 69 O TRP A 599 -10.799 -16.409 -11.317 1.00 72.28 ATOM 70 CB TRP A 599 -11.712 -13.586 -11.082 1.00 82.21 ATOM 71 CG TRP A 599 -12.391 -12.274 -10.800 1.00 84.17 ATOM 72 CD1 TRP A 599 -11.783 -11.094 -10.478 1.00 85.99 ATOM 73 CD2 TRP A 599 -13.798 -11.994 -10.865 1.00 84.70 ATOM 74 NE1 TRP A 599 -12.725 -10.101 -10.325 1.00 87.20 ATOM 75 CE2 TRP A 599 -13.969 -10.629 -10.555 1.00 85.08 ATOM 76 CE3 TRP A 599 -14.928 -12.765 -11.152 1.00 87.25 ATOM 77 CZ2 TRP A 599 -15.224 -10.021 -10.521 1.00 78.27 ATOM 78 CZ3 TRP A 599 -16.176 -12.162 -11.113 1.00 84.92 ATOM 79 CH2 TRP A 599 -16.312 -10.802 -10.801 1.00 78.25 ATOM 80 N ILE A 600 -13.031 -16.797 -11.218 1.00 65.17 ATOM 81 CA ILE A 600 -12.978 -18.136 -11.811 1.00 68.40 ATOM 82 C ILE A 600 -13.287 -18.062 -13.301 1.00 71.81 ATOM 83 O ILE A 600 -14.149 -17.289 -13.740 1.00 75.21 ATOM 84 CB ILE A 600 -13.944 -19.113 -11.101 1.00 62.36 ATOM 85 N ASN A 601 -12.594 -18.893 -14.082 1.00 73.28 ATOM 86 CA ASN A 601 -12.751 -18.927 -15.532 1.00 73.21 ATOM 87 C ASN A 601 -13.982 -19.748 -15.922 1.00 80.15 ATOM 88 O ASN A 601 -14.274 -20.766 -15.288 1.00 82.17 ATOM 89 CB ASN A 601 -11.503 -19.516 -16.196 1.00 63.05 ATOM 90 CG ASN A 601 -11.569 -19.461 -17.710 1.00 65.39 ATOM 91 OD1 ASN A 601 -12.175 -20.325 -18.349 1.00 69.33 ATOM 92 ND2 ASN A 601 -10.954 -18.433 -18.295 1.00 58.29 ATOM 93 N PRO A 602 -14.715 -19.325 -16.961 1.00 80.59 ATOM 94 CA PRO A 602 -15.914 -20.076 -17.378 1.00 83.05 ATOM 95 C PRO A 602 -15.651 -21.525 -17.776 1.00 81.75 ATOM 96 O PRO A 602 -16.525 -22.374 -17.562 1.00 84.87 ATOM 97 CB PRO A 602 -16.440 -19.257 -18.567 1.00 72.81 ATOM 98 CG PRO A 602 -15.949 -17.881 -18.320 1.00 71.17 ATOM 99 CD PRO A 602 -14.607 -18.029 -17.656 1.00 75.26 ATOM 100 N ALA A 603 -14.487 -21.837 -18.357 1.00 76.78 ATOM 101 CA ALA A 603 -14.205 -23.202 -18.792 1.00 71.33 ATOM 102 C ALA A 603 -14.005 -24.164 -17.629 1.00 76.99 ATOM 103 O ALA A 603 -13.951 -25.379 -17.855 1.00 83.99 ATOM 104 CB ALA A 603 -12.967 -23.227 -19.692 1.00 59.98 ATOM 105 N ASP A 604 -13.899 -23.657 -16.402 1.00 74.41 ATOM 106 CA ASP A 604 -13.694 -24.483 -15.220 1.00 77.40 ATOM 107 C ASP A 604 -14.903 -24.489 -14.288 1.00 79.20 ATOM 108 O ASP A 604 -14.785 -24.936 -13.143 1.00 79.69 ATOM 109 CB ASP A 604 -12.444 -24.014 -14.463 1.00 72.60 ATOM 110 CG ASP A 604 -11.182 -24.059 -15.319 1.00 71.44 ATOM 111 OD1 ASP A 604 -10.474 -23.035 -15.397 1.00 72.81 ATOM 112 OD2 ASP A 604 -10.887 -25.121 -15.907 1.00 72.17 ATOM 113 N VAL A 605 -16.060 -24.005 -14.743 1.00 81.89 ATOM 114 CA VAL A 605 -17.257 -23.944 -13.913 1.00 82.88 ATOM 115 C VAL A 605 -18.374 -24.735 -14.587 1.00 83.94 ATOM 116 O VAL A 605 -18.325 -25.027 -15.785 1.00 86.08 ATOM 117 CB VAL A 605 -17.706 -22.491 -13.643 1.00 72.14 ATOM 118 CG1 VAL A 605 -16.536 -21.640 -13.160 1.00 71.42 ATOM 119 CG2 VAL A 605 -18.320 -21.890 -14.890 1.00 64.26 ATOM 120 N GLU A 606 -19.391 -25.088 -13.795 1.00 82.07 ATOM 121 CA GLU A 606 -20.571 -25.769 -14.318 1.00 83.24 ATOM 122 C GLU A 606 -21.821 -25.295 -13.579 1.00 86.16 ATOM 123 O GLU A 606 -21.783 -25.053 -12.366 1.00 79.77 ATOM 124 CB GLU A 606 -20.434 -27.292 -14.204 1.00 82.50 ATOM 125 N LEU A 607 -22.922 -25.161 -14.323 1.00 91.91 ATOM 126 CA LEU A 607 -24.228 -24.807 -13.752 1.00 95.85 ATOM 127 C LEU A 607 -25.355 -25.585 -14.431 1.00 99.25 ATOM 128 O LEU A 607 -26.389 -25.872 -13.819 1.00105.20 ATOM 129 CB LEU A 607 -24.492 -23.305 -13.872 1.00 93.37 ATOM 130 N ASP A 623 -13.749 -28.043 -7.812 1.00 91.36 ATOM 131 CA ASP A 623 -13.829 -28.410 -6.402 1.00 94.03 ATOM 132 C ASP A 623 -15.147 -29.100 -6.110 1.00102.19 ATOM 133 O ASP A 623 -15.367 -29.589 -5.004 1.00100.55 ATOM 134 CB ASP A 623 -13.681 -27.179 -5.503 1.00 83.53 ATOM 135 N GLY A 624 -16.031 -29.133 -7.108 1.00105.67 ATOM 136 CA GLY A 624 -17.382 -29.614 -6.918 1.00107.11 ATOM 137 C GLY A 624 -18.309 -28.650 -6.208 1.00101.93 ATOM 138 O GLY A 624 -19.533 -28.819 -6.283 1.00 94.12 ATOM 139 N LEU A 625 -17.764 -27.640 -5.517 1.00103.77 ATOM 140 CA LEU A 625 -18.547 -26.611 -4.854 1.00107.45 ATOM 141 C LEU A 625 -18.985 -25.535 -5.855 1.00121.96 ATOM 142 O LEU A 625 -18.297 -25.281 -6.852 1.00124.95 ATOM 143 CB LEU A 625 -17.734 -25.977 -3.729 1.00 95.46 ATOM 144 N PRO A 626 -20.128 -24.894 -5.615 1.00122.20 ATOM 145 CA PRO A 626 -20.621 -23.884 -6.556 1.00119.05 ATOM 146 C PRO A 626 -19.783 -22.616 -6.503 1.00109.62 ATOM 147 O PRO A 626 -18.947 -22.415 -5.619 1.00110.58 ATOM 148 CB PRO A 626 -22.051 -23.626 -6.078 1.00120.02 ATOM 149 CG PRO A 626 -22.008 -23.937 -4.618 1.00119.31 ATOM 150 CD PRO A 626 -21.049 -25.084 -4.480 1.00122.59 ATOM 151 N VAL A 627 -20.022 -21.749 -7.485 1.00100.92 ATOM 152 CA VAL A 627 -19.449 -20.405 -7.492 1.00 95.40 ATOM 153 C VAL A 627 -20.606 -19.422 -7.587 1.00 95.31 ATOM 154 O VAL A 627 -21.772 -19.832 -7.687 1.00104.14 ATOM 155 CB VAL A 627 -18.453 -20.202 -8.649 1.00 84.67 ATOM 156 N VAL A 628 -20.311 -18.126 -7.543 1.00 89.60 ATOM 157 CA VAL A 628 -21.337 -17.094 -7.626 1.00 88.43 ATOM 158 C VAL A 628 -21.246 -16.437 -9.000 1.00 85.89 ATOM 159 O VAL A 628 -20.205 -15.874 -9.362 1.00 78.96 ATOM 160 CB VAL A 628 -21.193 -16.059 -6.505 1.00 85.35 ATOM 161 N ILE A 629 -22.343 -16.500 -9.754 1.00 87.06 ATOM 162 CA ILE A 629 -22.381 -16.048 -11.143 1.00 82.71 ATOM 163 C ILE A 629 -22.637 -14.543 -11.165 1.00 78.29 ATOM 164 O ILE A 629 -23.707 -14.079 -10.766 1.00 77.41 ATOM 165 CB ILE A 629 -23.447 -16.804 -11.944 1.00 83.81 ATOM 166 N SER A 630 -21.660 -13.784 -11.653 1.00 74.44 ATOM 167 CA SER A 630 -21.689 -12.331 -11.666 1.00 69.68 ATOM 168 C SER A 630 -22.042 -11.815 -13.071 1.00 69.68 ATOM 169 O SER A 630 -22.666 -12.527 -13.873 1.00 71.73 ATOM 170 CB SER A 630 -20.341 -11.806 -11.153 1.00 70.54 ATOM 171 OG SER A 630 -20.211 -10.417 -11.371 1.00 73.40 ATOM 172 N GLY A 631 -21.635 -10.565 -13.383 1.00 62.11 ATOM 173 CA GLY A 631 -22.116 -9.883 -14.570 1.00 53.12 ATOM 174 C GLY A 631 -21.375 -10.253 -15.838 1.00 61.42 ATOM 175 O GLY A 631 -20.311 -10.868 -15.819 1.00 71.51 ATOM 176 N THR A 632 -21.961 -9.848 -16.965 1.00 58.79 ATOM 177 CA THR A 632 -21.419 -10.107 -18.295 1.00 58.15 ATOM 178 C THR A 632 -20.628 -8.886 -18.770 1.00 55.59 ATOM 179 O THR A 632 -21.190 -7.795 -18.893 1.00 58.25 ATOM 180 CB THR A 632 -22.555 -10.435 -19.268 1.00 59.37 ATOM 181 OG1 THR A 632 -23.210 -11.639 -18.852 1.00 69.17 ATOM 182 CG2 THR A 632 -22.033 -10.597 -20.688 1.00 60.41 ATOM 183 N GLU A 633 -19.335 -9.076 -19.051 1.00 50.02 ATOM 184 CA GLU A 633 -18.414 -7.990 -19.380 1.00 56.77 ATOM 185 C GLU A 633 -17.506 -8.399 -20.532 1.00 53.36 ATOM 186 O GLU A 633 -17.420 -9.574 -20.901 1.00 55.51 ATOM 187 CB GLU A 633 -17.494 -7.615 -18.209 1.00 60.69 ATOM 188 CG GLU A 633 -18.135 -7.027 -16.987 1.00 76.26 ATOM 189 CD GLU A 633 -17.092 -6.673 -15.943 1.00 85.98 ATOM 190 OE1 GLU A 633 -15.890 -6.875 -16.229 1.00 87.09 ATOM 191 OE2 GLU A 633 -17.467 -6.197 -14.849 1.00 94.96 ATOM 192 C1 LSS A 901 -3.157 -4.211 -28.059 1.00 31.19 ATOM 193 N1 LSS A 901 -13.333 -8.355 -27.892 1.00 35.94 ATOM 194 O1 LSS A 901 -4.195 -3.688 -27.675 1.00 33.88 ATOM 195 S1 LSS A 901 -4.232 -6.515 -27.215 1.00 37.16 ATOM 196 C2 LSS A 901 -12.920 -7.960 -29.100 1.00 43.90 ATOM 197 N2 LSS A 901 -3.077 -5.633 -27.875 1.00 36.53 ATOM 198 O2 LSS A 901 -9.292 -4.323 -29.376 1.00 36.05 ATOM 199 N3 LSS A 901 -11.695 -7.600 -29.493 1.00 46.06 ATOM 200 O3 LSS A 901 -7.586 -4.601 -31.416 1.00 42.06 ATOM 201 C4 LSS A 901 -10.827 -7.668 -28.475 1.00 39.98 ATOM 202 N4 LSS A 901 -0.843 -4.416 -28.631 1.00 33.86 ATOM 203 O4 LSS A 901 -7.602 -7.426 -29.865 1.00 31.28 ATOM 204 C5 LSS A 901 -11.103 -8.072 -27.176 1.00 40.04 ATOM 205 O5 LSS A 901 -5.503 -6.533 -28.178 1.00 42.05 ATOM 206 C6 LSS A 901 -12.432 -8.427 -26.891 1.00 38.67 ATOM 207 N6 LSS A 901 -12.855 -8.811 -25.679 1.00 41.91 ATOM 208 C7 LSS A 901 -1.317 -1.902 -30.562 1.00 32.09 ATOM 209 N7 LSS A 901 -9.956 -8.015 -26.404 1.00 40.05 ATOM 210 C8 LSS A 901 -9.034 -7.589 -27.224 1.00 39.77 ATOM 211 C9 LSS A 901 -2.285 -2.991 -30.091 1.00 32.22 ATOM 212 N9 LSS A 901 -9.494 -7.333 -28.499 1.00 34.79 ATOM 213 CA LSS A 901 -1.981 -3.482 -28.671 1.00 33.32 ATOM 214 C10 LSS A 901 -1.498 -1.583 -32.045 1.00 29.23 ATOM 215 C11 LSS A 901 -1.452 -0.641 -29.704 1.00 32.66 ATOM 216 O1A LSS A 901 -4.714 -5.943 -26.009 1.00 30.51 ATOM 217 C21 LSS A 901 -8.765 -6.679 -29.573 1.00 32.92 ATOM 218 C22 LSS A 901 -8.264 -5.284 -29.197 1.00 32.65 ATOM 219 C23 LSS A 901 -7.104 -5.102 -30.173 1.00 32.27 ATOM 220 C24 LSS A 901 -6.559 -6.533 -30.333 1.00 37.74 ATOM 221 C25 LSS A 901 -5.271 -6.829 -29.600 1.00 35.18 ATOM 222 O2A LSS A 901 -3.711 -7.838 -27.250 1.00 38.94 TER