HEADER ISOMERASE 31-DEC-69 6RKW TITLE CryoEM structure of the complete E. coli DNA Gyrase complex bound to TITLE 2 a 130 bp DNA duplex COMPND MOL_ID: 2; COMPND 2 MOLECULE: DNA gyrase subunit B; COMPND 3 CHAIN: B, D; COMPND 4 EC: 5.6.2.3; COMPND 5 ENGINEERED: YES; COMPND 6 GyrB subunit; EXPDTA ELECTRON MICROSCOPY DBREF 6RKW B 1 804 UNP P0AES6 GYRB_ECOLI 1 804 SEQRES 1 B 30 PRO LEU TYR LYS VAL LYS LYS GLY LYS GLN GLU GLN TYR SEQRES 2 B 30 ILE LYS ASP ASP GLU ALA MET ASP GLN TYR GLN ILE SER SEQRES 3 B 30 ILE ALA LEU ASP ATOM 1 N PRO B 533 179.876 138.844 142.647 1.00239.42 ATOM 2 CA PRO B 533 180.232 139.063 141.240 1.00239.42 ATOM 3 C PRO B 533 179.864 140.469 140.790 1.00239.42 ATOM 4 O PRO B 533 179.125 141.201 141.449 1.00239.42 ATOM 5 CB PRO B 533 179.409 138.006 140.496 1.00239.42 ATOM 6 CG PRO B 533 179.137 136.951 141.520 1.00239.42 ATOM 7 CD PRO B 533 178.966 137.698 142.811 1.00239.42 ATOM 8 N LEU B 534 180.397 140.842 139.635 1.00256.74 ATOM 9 CA LEU B 534 180.163 142.174 139.090 1.00256.74 ATOM 10 C LEU B 534 179.622 142.151 137.669 1.00256.74 ATOM 11 O LEU B 534 178.802 143.004 137.317 1.00256.74 ATOM 12 CB LEU B 534 181.463 142.994 139.143 1.00256.74 ATOM 13 CG LEU B 534 181.383 144.449 138.678 1.00256.74 ATOM 14 CD1 LEU B 534 180.432 145.240 139.561 1.00256.74 ATOM 15 CD2 LEU B 534 182.764 145.083 138.678 1.00256.74 ATOM 16 N TYR B 535 180.050 141.198 136.846 1.00266.36 ATOM 17 CA TYR B 535 179.607 141.097 135.465 1.00266.36 ATOM 18 C TYR B 535 179.008 139.723 135.204 1.00266.36 ATOM 19 O TYR B 535 179.456 138.715 135.759 1.00266.36 ATOM 20 CB TYR B 535 180.761 141.348 134.486 1.00266.36 ATOM 21 CG TYR B 535 181.292 142.762 134.505 1.00266.36 ATOM 22 CD1 TYR B 535 180.634 143.780 133.827 1.00266.36 ATOM 23 CD2 TYR B 535 182.455 143.079 135.194 1.00266.36 ATOM 24 CE1 TYR B 535 181.117 145.075 133.838 1.00266.36 ATOM 25 CE2 TYR B 535 182.946 144.370 135.210 1.00266.36 ATOM 26 CZ TYR B 535 182.273 145.364 134.532 1.00266.36 ATOM 27 OH TYR B 535 182.759 146.651 134.546 1.00266.36 ATOM 28 N LYS B 536 177.987 139.694 134.350 1.00232.48 ATOM 29 CA LYS B 536 177.343 138.454 133.920 1.00232.48 ATOM 30 C LYS B 536 177.317 138.461 132.395 1.00232.48 ATOM 31 O LYS B 536 176.512 139.169 131.784 1.00232.48 ATOM 32 CB LYS B 536 175.939 138.326 134.508 1.00232.48 ATOM 33 CG LYS B 536 175.236 137.014 134.184 1.00232.48 ATOM 34 CD LYS B 536 174.262 137.168 133.025 1.00232.48 ATOM 35 CE LYS B 536 173.538 135.863 132.736 1.00232.48 ATOM 36 NZ LYS B 536 172.660 135.454 133.866 1.00232.48 ATOM 37 N VAL B 537 178.200 137.676 131.784 1.00231.80 ATOM 38 CA VAL B 537 178.310 137.588 130.333 1.00231.80 ATOM 39 C VAL B 537 177.640 136.301 129.875 1.00231.80 ATOM 40 O VAL B 537 177.942 135.217 130.390 1.00231.80 ATOM 41 CB VAL B 537 179.779 137.637 129.880 1.00231.80 ATOM 42 CG1 VAL B 537 179.876 137.443 128.375 1.00231.80 ATOM 43 CG2 VAL B 537 180.417 138.953 130.297 1.00231.80 ATOM 44 N LYS B 538 176.731 136.418 128.909 1.00285.92 ATOM 45 CA LYS B 538 175.986 135.279 128.384 1.00285.92 ATOM 46 C LYS B 538 175.989 135.352 126.864 1.00285.92 ATOM 47 O LYS B 538 175.331 136.219 126.279 1.00285.92 ATOM 48 CB LYS B 538 174.556 135.258 128.926 1.00285.92 ATOM 49 CG LYS B 538 173.734 134.067 128.464 1.00285.92 ATOM 50 CD LYS B 538 172.367 134.050 129.127 1.00285.92 ATOM 51 CE LYS B 538 171.489 132.950 128.555 1.00285.92 ATOM 52 NZ LYS B 538 172.020 131.595 128.870 1.00285.92 ATOM 53 N LYS B 539 176.725 134.447 126.227 1.00286.55 ATOM 54 CA LYS B 539 176.759 134.323 124.772 1.00286.55 ATOM 55 C LYS B 539 175.961 133.073 124.410 1.00286.55 ATOM 56 O LYS B 539 176.517 131.984 124.260 1.00286.55 ATOM 57 CB LYS B 539 178.193 134.242 124.253 1.00286.55 ATOM 58 CG LYS B 539 179.007 135.509 124.450 1.00286.55 ATOM 59 CD LYS B 539 180.412 135.342 123.893 1.00286.55 ATOM 60 CE LYS B 539 181.206 136.633 123.994 1.00286.55 ATOM 61 NZ LYS B 539 181.478 137.012 125.407 1.00286.55 ATOM 62 N GLY B 540 174.648 133.240 124.267 1.00304.80 ATOM 63 CA GLY B 540 173.773 132.118 123.996 1.00304.80 ATOM 64 C GLY B 540 173.765 131.109 125.126 1.00304.80 ATOM 65 O GLY B 540 173.225 131.376 126.204 1.00304.80 ATOM 66 N LYS B 541 174.366 129.942 124.889 1.00330.80 ATOM 67 CA LYS B 541 174.460 128.926 125.931 1.00330.80 ATOM 68 C LYS B 541 175.645 129.169 126.858 1.00330.80 ATOM 69 O LYS B 541 175.571 128.847 128.049 1.00330.80 ATOM 70 CB LYS B 541 174.561 127.537 125.297 1.00330.80 ATOM 71 CG LYS B 541 174.603 126.390 126.295 1.00330.80 ATOM 72 CD LYS B 541 174.592 125.044 125.588 1.00330.80 ATOM 73 CE LYS B 541 174.787 123.902 126.572 1.00330.80 ATOM 74 NZ LYS B 541 173.642 123.780 127.516 1.00330.80 ATOM 75 N GLN B 542 176.730 129.740 126.340 1.00297.70 ATOM 76 CA GLN B 542 177.934 129.968 127.133 1.00297.70 ATOM 77 C GLN B 542 177.700 131.116 128.108 1.00297.70 ATOM 78 O GLN B 542 177.484 132.260 127.694 1.00297.70 ATOM 79 CB GLN B 542 179.118 130.265 126.217 1.00297.70 ATOM 80 CG GLN B 542 180.440 130.434 126.948 1.00297.70 ATOM 81 CD GLN B 542 181.601 130.674 126.004 1.00297.70 ATOM 82 OE1 GLN B 542 181.422 130.751 124.788 1.00297.70 ATOM 83 NE2 GLN B 542 182.801 130.792 126.560 1.00297.70 ATOM 84 N GLU B 543 177.741 130.813 129.401 1.00256.43 ATOM 85 CA GLU B 543 177.615 131.808 130.454 1.00256.43 ATOM 86 C GLU B 543 178.953 131.987 131.161 1.00256.43 ATOM 87 O GLU B 543 179.843 131.136 131.080 1.00256.43 ATOM 88 CB GLU B 543 176.535 131.406 131.465 1.00256.43 ATOM 89 CG GLU B 543 176.860 130.148 132.253 1.00256.43 ATOM 90 CD GLU B 543 175.742 129.745 133.193 1.00256.43 ATOM 91 OE1 GLU B 543 174.702 130.437 133.213 1.00256.43 ATOM 92 OE2 GLU B 543 175.903 128.736 133.912 1.00256.43 ATOM 93 N GLN B 544 179.085 133.111 131.862 1.00200.84 ATOM 94 CA GLN B 544 180.327 133.426 132.554 1.00200.84 ATOM 95 C GLN B 544 180.050 134.460 133.635 1.00200.84 ATOM 96 O GLN B 544 179.315 135.423 133.408 1.00200.84 ATOM 97 CB GLN B 544 181.390 133.948 131.579 1.00200.84 ATOM 98 CG GLN B 544 182.738 134.228 132.222 1.00200.84 ATOM 99 CD GLN B 544 183.415 132.968 132.725 1.00200.84 ATOM 100 OE1 GLN B 544 183.391 131.931 132.063 1.00200.84 ATOM 101 NE2 GLN B 544 184.022 133.052 133.903 1.00200.84 ATOM 102 N TYR B 545 180.645 134.249 134.807 1.00205.81 ATOM 103 CA TYR B 545 180.544 135.171 135.930 1.00205.81 ATOM 104 C TYR B 545 181.895 135.844 136.130 1.00205.81 ATOM 105 O TYR B 545 182.892 135.171 136.409 1.00205.81 ATOM 106 CB TYR B 545 180.110 134.443 137.202 1.00205.81 ATOM 107 CG TYR B 545 178.699 133.903 137.148 1.00205.81 ATOM 108 CD1 TYR B 545 177.609 134.731 137.384 1.00205.81 ATOM 109 CD2 TYR B 545 178.457 132.566 136.861 1.00205.81 ATOM 110 CE1 TYR B 545 176.318 134.242 137.335 1.00205.81 ATOM 111 CE2 TYR B 545 177.169 132.068 136.810 1.00205.81 ATOM 112 CZ TYR B 545 176.104 132.910 137.048 1.00205.81 ATOM 113 OH TYR B 545 174.820 132.419 136.998 1.00205.81 ATOM 114 N ILE B 546 181.924 137.167 135.986 1.00250.38 ATOM 115 CA ILE B 546 183.145 137.954 136.105 1.00250.38 ATOM 116 C ILE B 546 182.945 138.980 137.211 1.00250.38 ATOM 117 O ILE B 546 181.906 139.649 137.264 1.00250.38 ATOM 118 CB ILE B 546 183.508 138.636 134.773 1.00250.38 ATOM 119 CG1 ILE B 546 183.797 137.577 133.706 1.00250.38 ATOM 120 CG2 ILE B 546 184.704 139.559 134.948 1.00250.38 ATOM 121 CD1 ILE B 546 183.909 138.129 132.305 1.00250.38 ATOM 122 N LYS B 547 183.939 139.101 138.095 1.00279.89 ATOM 123 CA LYS B 547 183.840 139.972 139.256 1.00279.89 ATOM 124 C LYS B 547 184.743 141.195 139.197 1.00279.89 ATOM 125 O LYS B 547 184.500 142.153 139.937 1.00279.89 ATOM 126 CB LYS B 547 184.169 139.191 140.537 1.00279.89 ATOM 127 CG LYS B 547 185.613 138.718 140.607 1.00279.89 ATOM 128 CD LYS B 547 185.885 137.928 141.875 1.00279.89 ATOM 129 CE LYS B 547 187.339 137.486 141.940 1.00279.89 ATOM 130 NZ LYS B 547 187.634 136.712 143.175 1.00279.89 ATOM 131 N ASP B 548 185.768 141.192 138.349 1.00293.71 ATOM 132 CA ASP B 548 186.756 142.258 138.325 1.00293.71 ATOM 133 C ASP B 548 186.854 142.867 136.932 1.00293.71 ATOM 134 O ASP B 548 186.395 142.292 135.941 1.00293.71 ATOM 135 CB ASP B 548 188.133 141.744 138.766 1.00293.71 ATOM 136 CG ASP B 548 188.172 141.374 140.236 1.00293.71 ATOM 137 OD1 ASP B 548 187.415 141.979 141.023 1.00293.71 ATOM 138 OD2 ASP B 548 188.959 140.477 140.603 1.00293.71 ATOM 139 N ASP B 549 187.465 144.052 136.874 1.00256.14 ATOM 140 CA ASP B 549 187.650 144.731 135.596 1.00256.14 ATOM 141 C ASP B 549 188.770 144.082 134.790 1.00256.14 ATOM 142 O ASP B 549 188.650 143.918 133.570 1.00256.14 ATOM 143 CB ASP B 549 187.940 146.215 135.834 1.00256.14 ATOM 144 CG ASP B 549 187.880 147.042 134.560 1.00256.14 ATOM 145 OD1 ASP B 549 187.630 146.476 133.476 1.00256.14 ATOM 146 OD2 ASP B 549 188.082 148.272 134.647 1.00256.14 ATOM 147 N GLU B 550 189.865 143.705 135.454 1.00244.22 ATOM 148 CA GLU B 550 190.953 143.027 134.756 1.00244.22 ATOM 149 C GLU B 550 190.504 141.669 134.230 1.00244.22 ATOM 150 O GLU B 550 190.895 141.261 133.130 1.00244.22 ATOM 151 CB GLU B 550 192.159 142.874 135.682 1.00244.22 ATOM 152 CG GLU B 550 193.374 142.247 135.018 1.00244.22 ATOM 153 CD GLU B 550 194.566 142.154 135.950 1.00244.22 ATOM 154 OE1 GLU B 550 194.437 142.562 137.124 1.00244.22 ATOM 155 OE2 GLU B 550 195.631 141.672 135.510 1.00244.22 ATOM 156 N ALA B 551 189.679 140.957 135.001 1.00250.48 ATOM 157 CA ALA B 551 189.129 139.694 134.522 1.00250.48 ATOM 158 C ALA B 551 188.238 139.911 133.306 1.00250.48 ATOM 159 O ALA B 551 188.275 139.127 132.351 1.00250.48 ATOM 160 CB ALA B 551 188.355 138.998 135.641 1.00250.48 ATOM 161 N MET B 552 187.435 140.979 133.322 1.00262.72 ATOM 162 CA MET B 552 186.603 141.298 132.167 1.00262.72 ATOM 163 C MET B 552 187.455 141.604 130.943 1.00262.72 ATOM 164 O MET B 552 187.141 141.164 129.831 1.00262.72 ATOM 165 CB MET B 552 185.688 142.479 132.491 1.00262.72 ATOM 166 CG MET B 552 184.675 142.797 131.405 1.00262.72 ATOM 167 SD MET B 552 183.456 141.488 131.188 1.00262.72 ATOM 168 CE MET B 552 182.941 141.778 129.499 1.00262.72 ATOM 169 N ASP B 553 188.544 142.353 131.129 1.00262.18 ATOM 170 CA ASP B 553 189.424 142.672 130.010 1.00262.18 ATOM 171 C ASP B 553 190.095 141.419 129.460 1.00262.18 ATOM 172 O ASP B 553 190.202 141.251 128.239 1.00262.18 ATOM 173 CB ASP B 553 190.471 143.697 130.443 1.00262.18 ATOM 174 CG ASP B 553 189.870 145.059 130.727 1.00262.18 ATOM 175 OD1 ASP B 553 188.840 145.396 130.106 1.00262.18 ATOM 176 OD2 ASP B 553 190.426 145.793 131.571 1.00262.18 ATOM 177 N GLN B 554 190.550 140.529 130.344 1.00261.42 ATOM 178 CA GLN B 554 191.163 139.285 129.890 1.00261.42 ATOM 179 C GLN B 554 190.157 138.416 129.147 1.00261.42 ATOM 180 O GLN B 554 190.495 137.786 128.139 1.00261.42 ATOM 181 CB GLN B 554 191.757 138.527 131.077 1.00261.42 ATOM 182 CG GLN B 554 192.946 139.219 131.722 1.00261.42 ATOM 183 CD GLN B 554 193.494 138.450 132.908 1.00261.42 ATOM 184 OE1 GLN B 554 192.947 137.420 133.301 1.00261.42 ATOM 185 NE2 GLN B 554 194.582 138.949 133.485 1.00261.42 ATOM 186 N TYR B 555 188.910 138.378 129.623 1.00281.06 ATOM 187 CA TYR B 555 187.879 137.614 128.928 1.00281.06 ATOM 188 C TYR B 555 187.584 138.208 127.556 1.00281.06 ATOM 189 O TYR B 555 187.394 137.470 126.581 1.00281.06 ATOM 190 CB TYR B 555 186.609 137.556 129.776 1.00281.06 ATOM 191 CG TYR B 555 185.496 136.742 129.159 1.00281.06 ATOM 192 CD1 TYR B 555 185.539 135.354 129.166 1.00281.06 ATOM 193 CD2 TYR B 555 184.400 137.360 128.572 1.00281.06 ATOM 194 CE1 TYR B 555 184.523 134.604 128.604 1.00281.06 ATOM 195 CE2 TYR B 555 183.380 136.619 128.007 1.00281.06 ATOM 196 CZ TYR B 555 183.446 135.242 128.026 1.00281.06 ATOM 197 OH TYR B 555 182.431 134.501 127.465 1.00281.06 ATOM 198 N GLN B 556 187.539 139.540 127.460 1.00294.69 ATOM 199 CA GLN B 556 187.329 140.181 126.166 1.00294.69 ATOM 200 C GLN B 556 188.472 139.874 125.207 1.00294.69 ATOM 201 O GLN B 556 188.245 139.616 124.020 1.00294.69 ATOM 202 CB GLN B 556 187.170 141.691 126.342 1.00294.69 ATOM 203 CG GLN B 556 185.902 142.109 127.067 1.00294.69 ATOM 204 CD GLN B 556 185.801 143.612 127.239 1.00294.69 ATOM 205 OE1 GLN B 556 186.716 144.352 126.876 1.00294.69 ATOM 206 NE2 GLN B 556 184.686 144.072 127.793 1.00294.69 ATOM 207 N ILE B 557 189.710 139.896 125.706 1.00351.26 ATOM 208 CA ILE B 557 190.856 139.575 124.860 1.00351.26 ATOM 209 C ILE B 557 190.802 138.118 124.413 1.00351.26 ATOM 210 O ILE B 557 191.132 137.793 123.266 1.00351.26 ATOM 211 CB ILE B 557 192.171 139.899 125.594 1.00351.26 ATOM 212 CG1 ILE B 557 192.275 141.402 125.863 1.00351.26 ATOM 213 CG2 ILE B 557 193.371 139.424 124.789 1.00351.26 ATOM 214 CD1 ILE B 557 193.401 141.778 126.801 1.00351.26 ATOM 215 N SER B 558 190.375 137.220 125.305 1.00310.57 ATOM 216 CA SER B 558 190.284 135.808 124.946 1.00310.57 ATOM 217 C SER B 558 189.207 135.571 123.895 1.00310.57 ATOM 218 O SER B 558 189.407 134.784 122.962 1.00310.57 ATOM 219 CB SER B 558 190.013 134.968 126.193 1.00310.57 ATOM 220 OG SER B 558 189.888 133.595 125.864 1.00310.57 ATOM 221 N ILE B 559 188.058 136.236 124.030 1.00320.11 ATOM 222 CA ILE B 559 186.995 136.084 123.040 1.00320.11 ATOM 223 C ILE B 559 187.414 136.693 121.706 1.00320.11 ATOM 224 O ILE B 559 187.117 136.144 120.638 1.00320.11 ATOM 225 CB ILE B 559 185.682 136.698 123.560 1.00320.11 ATOM 226 CG1 ILE B 559 185.236 135.995 124.843 1.00320.11 ATOM 227 CG2 ILE B 559 184.592 136.614 122.502 1.00320.11 ATOM 228 CD1 ILE B 559 184.961 134.518 124.666 1.00320.11 ATOM 229 N ALA B 560 188.116 137.827 121.742 1.00360.09 ATOM 230 CA ALA B 560 188.572 138.469 120.515 1.00360.09 ATOM 231 C ALA B 560 189.662 137.680 119.801 1.00360.09 ATOM 232 O ALA B 560 190.001 138.021 118.663 1.00360.09 ATOM 233 CB ALA B 560 189.073 139.882 120.818 1.00360.09 ATOM 234 N LEU B 561 190.214 136.644 120.432 1.00381.93 ATOM 235 CA LEU B 561 191.275 135.853 119.821 1.00381.93 ATOM 236 C LEU B 561 190.916 134.373 119.815 1.00381.93 ATOM 237 O LEU B 561 191.734 133.528 120.196 1.00381.93 ATOM 238 CB LEU B 561 192.599 136.076 120.556 1.00381.93 ATOM 239 CG LEU B 561 193.194 137.483 120.463 1.00381.93 ATOM 240 CD1 LEU B 561 194.424 137.606 121.349 1.00381.93 ATOM 241 CD2 LEU B 561 193.530 137.828 119.021 1.00381.93 ATOM 242 N ASP B 562 189.696 134.047 119.386 1.00358.47 ATOM 243 CA ASP B 562 189.231 132.661 119.336 1.00358.47 ATOM 244 C ASP B 562 189.853 131.956 118.129 1.00358.47 ATOM 245 O ASP B 562 189.229 131.748 117.086 1.00358.47 ATOM 246 CB ASP B 562 187.710 132.606 119.294 1.00358.47 ATOM 247 CG ASP B 562 187.074 133.039 120.599 1.00358.47 ATOM 248 OD1 ASP B 562 187.708 132.858 121.660 1.00358.47 ATOM 249 OD2 ASP B 562 185.937 133.555 120.566 1.00358.47 TER