HEADER ISOMERASE 31-DEC-69 6RKW TITLE CryoEM structure of the complete E. coli DNA Gyrase complex bound to TITLE 2 a 130 bp DNA duplex COMPND MOL_ID: 2; COMPND 2 MOLECULE: DNA gyrase subunit B; COMPND 3 CHAIN: B, D; COMPND 4 EC: 5.6.2.3; COMPND 5 ENGINEERED: YES; COMPND 6 GyrB subunit; EXPDTA ELECTRON MICROSCOPY DBREF 6RKW D 1 804 UNP P0AES6 GYRB_ECOLI 1 804 SEQRES 1 D 30 PRO LEU TYR LYS VAL LYS LYS GLY LYS GLN GLU GLN TYR SEQRES 2 D 30 ILE LYS ASP ASP GLU ALA MET ASP GLN TYR GLN ILE SER SEQRES 3 D 30 ILE ALA LEU ASP ATOM 1 N PRO D 533 136.438 177.214 141.639 1.00218.57 ATOM 2 CA PRO D 533 136.177 177.028 140.207 1.00218.57 ATOM 3 C PRO D 533 136.578 175.634 139.749 1.00218.57 ATOM 4 O PRO D 533 137.275 174.888 140.439 1.00218.57 ATOM 5 CB PRO D 533 137.045 178.104 139.545 1.00218.57 ATOM 6 CG PRO D 533 137.245 179.134 140.610 1.00218.57 ATOM 7 CD PRO D 533 137.332 178.357 141.892 1.00218.57 ATOM 8 N LEU D 534 136.123 175.287 138.554 1.00208.61 ATOM 9 CA LEU D 534 136.399 173.969 137.994 1.00208.61 ATOM 10 C LEU D 534 137.033 174.026 136.613 1.00208.61 ATOM 11 O LEU D 534 137.885 173.190 136.300 1.00208.61 ATOM 12 CB LEU D 534 135.103 173.143 137.941 1.00208.61 ATOM 13 CG LEU D 534 135.224 171.701 137.446 1.00208.61 ATOM 14 CD1 LEU D 534 136.119 170.891 138.370 1.00208.61 ATOM 15 CD2 LEU D 534 133.850 171.061 137.333 1.00208.61 ATOM 16 N TYR D 535 136.648 174.990 135.781 1.00205.78 ATOM 17 CA TYR D 535 137.180 175.122 134.434 1.00205.78 ATOM 18 C TYR D 535 137.812 176.494 134.251 1.00205.78 ATOM 19 O TYR D 535 137.336 177.495 134.796 1.00205.78 ATOM 20 CB TYR D 535 136.088 174.914 133.378 1.00205.78 ATOM 21 CG TYR D 535 135.542 173.507 133.324 1.00205.78 ATOM 22 CD1 TYR D 535 136.229 172.500 132.659 1.00205.78 ATOM 23 CD2 TYR D 535 134.335 173.186 133.931 1.00205.78 ATOM 24 CE1 TYR D 535 135.732 171.211 132.605 1.00205.78 ATOM 25 CE2 TYR D 535 133.830 171.901 133.881 1.00205.78 ATOM 26 CZ TYR D 535 134.533 170.917 133.217 1.00205.78 ATOM 27 OH TYR D 535 134.034 169.636 133.166 1.00205.78 ATOM 28 N LYS D 536 138.893 176.528 133.475 1.00194.19 ATOM 29 CA LYS D 536 139.584 177.768 133.124 1.00194.19 ATOM 30 C LYS D 536 139.721 177.795 131.605 1.00194.19 ATOM 31 O LYS D 536 140.576 177.107 131.040 1.00194.19 ATOM 32 CB LYS D 536 140.942 177.862 133.816 1.00194.19 ATOM 33 CG LYS D 536 141.684 179.170 133.579 1.00194.19 ATOM 34 CD LYS D 536 142.740 179.030 132.492 1.00194.19 ATOM 35 CE LYS D 536 143.500 180.330 132.289 1.00194.19 ATOM 36 NZ LYS D 536 144.297 180.698 133.492 1.00194.19 ATOM 37 N VAL D 537 138.875 178.583 130.948 1.00219.24 ATOM 38 CA VAL D 537 138.866 178.696 129.495 1.00219.24 ATOM 39 C VAL D 537 139.565 179.990 129.107 1.00219.24 ATOM 40 O VAL D 537 139.231 181.065 129.621 1.00219.24 ATOM 41 CB VAL D 537 137.432 178.657 128.941 1.00219.24 ATOM 42 CG1 VAL D 537 137.438 178.877 127.437 1.00219.24 ATOM 43 CG2 VAL D 537 136.766 177.335 129.290 1.00219.24 ATOM 44 N LYS D 538 140.536 179.889 128.201 1.00251.09 ATOM 45 CA LYS D 538 141.317 181.036 127.749 1.00251.09 ATOM 46 C LYS D 538 141.406 180.997 126.230 1.00251.09 ATOM 47 O LYS D 538 142.064 180.116 125.666 1.00251.09 ATOM 48 CB LYS D 538 142.710 181.036 128.377 1.00251.09 ATOM 49 CG LYS D 538 143.564 182.233 127.993 1.00251.09 ATOM 50 CD LYS D 538 144.888 182.227 128.739 1.00251.09 ATOM 51 CE LYS D 538 145.803 183.335 128.246 1.00251.09 ATOM 52 NZ LYS D 538 145.258 184.685 128.561 1.00251.09 ATOM 53 N LYS D 539 140.747 181.945 125.572 1.00281.68 ATOM 54 CA LYS D 539 140.806 182.102 124.120 1.00281.68 ATOM 55 C LYS D 539 141.633 183.353 123.837 1.00281.68 ATOM 56 O LYS D 539 141.094 184.449 123.677 1.00281.68 ATOM 57 CB LYS D 539 139.409 182.203 123.514 1.00281.68 ATOM 58 CG LYS D 539 138.578 180.937 123.632 1.00281.68 ATOM 59 CD LYS D 539 137.212 181.124 122.992 1.00281.68 ATOM 60 CE LYS D 539 136.408 179.835 123.014 1.00281.68 ATOM 61 NZ LYS D 539 136.047 179.428 124.398 1.00281.68 ATOM 62 N GLY D 540 142.951 183.179 123.770 1.00316.61 ATOM 63 CA GLY D 540 143.848 184.300 123.579 1.00316.61 ATOM 64 C GLY D 540 143.792 185.285 124.727 1.00316.61 ATOM 65 O GLY D 540 144.262 184.993 125.831 1.00316.61 ATOM 66 N LYS D 541 143.214 186.461 124.478 1.00322.80 ATOM 67 CA LYS D 541 143.054 187.453 125.534 1.00322.80 ATOM 68 C LYS D 541 141.811 187.192 126.376 1.00322.80 ATOM 69 O LYS D 541 141.805 187.495 127.575 1.00322.80 ATOM 70 CB LYS D 541 142.998 188.857 124.927 1.00322.80 ATOM 71 CG LYS D 541 142.898 189.981 125.946 1.00322.80 ATOM 72 CD LYS D 541 142.958 191.342 125.271 1.00322.80 ATOM 73 CE LYS D 541 142.708 192.464 126.266 1.00322.80 ATOM 74 NZ LYS D 541 143.792 192.558 127.281 1.00322.80 ATOM 75 N GLN D 542 140.765 186.628 125.777 1.00291.09 ATOM 76 CA GLN D 542 139.512 186.382 126.483 1.00291.09 ATOM 77 C GLN D 542 139.684 185.221 127.455 1.00291.09 ATOM 78 O GLN D 542 139.934 184.084 127.040 1.00291.09 ATOM 79 CB GLN D 542 138.395 186.095 125.485 1.00291.09 ATOM 80 CG GLN D 542 137.027 185.908 126.122 1.00291.09 ATOM 81 CD GLN D 542 135.934 185.679 125.097 1.00291.09 ATOM 82 OE1 GLN D 542 136.195 185.621 123.895 1.00291.09 ATOM 83 NE2 GLN D 542 134.699 185.546 125.568 1.00291.09 ATOM 84 N GLU D 543 139.553 185.503 128.747 1.00246.71 ATOM 85 CA GLU D 543 139.603 184.493 129.791 1.00246.71 ATOM 86 C GLU D 543 138.219 184.307 130.399 1.00246.71 ATOM 87 O GLU D 543 137.341 185.166 130.276 1.00246.71 ATOM 88 CB GLU D 543 140.611 184.877 130.880 1.00246.71 ATOM 89 CG GLU D 543 140.233 186.124 131.661 1.00246.71 ATOM 90 CD GLU D 543 141.283 186.511 132.683 1.00246.71 ATOM 91 OE1 GLU D 543 142.318 185.817 132.765 1.00246.71 ATOM 92 OE2 GLU D 543 141.074 187.509 133.404 1.00246.71 ATOM 93 N GLN D 544 138.032 183.170 131.065 1.00211.77 ATOM 94 CA GLN D 544 136.744 182.849 131.663 1.00211.77 ATOM 95 C GLN D 544 136.938 181.786 132.734 1.00211.77 ATOM 96 O GLN D 544 137.682 180.823 132.534 1.00211.77 ATOM 97 CB GLN D 544 135.746 182.361 130.605 1.00211.77 ATOM 98 CG GLN D 544 134.354 182.081 131.146 1.00211.77 ATOM 99 CD GLN D 544 133.654 183.336 131.628 1.00211.77 ATOM 100 OE1 GLN D 544 133.733 184.388 130.993 1.00211.77 ATOM 101 NE2 GLN D 544 132.965 183.232 132.758 1.00211.77 ATOM 102 N TYR D 545 136.265 181.972 133.866 1.00200.02 ATOM 103 CA TYR D 545 136.280 181.019 134.970 1.00200.02 ATOM 104 C TYR D 545 134.912 180.358 135.059 1.00200.02 ATOM 105 O TYR D 545 133.904 181.037 135.284 1.00200.02 ATOM 106 CB TYR D 545 136.633 181.710 136.287 1.00200.02 ATOM 107 CG TYR D 545 138.049 182.236 136.342 1.00200.02 ATOM 108 CD1 TYR D 545 139.113 181.391 136.628 1.00200.02 ATOM 109 CD2 TYR D 545 138.321 183.577 136.107 1.00200.02 ATOM 110 CE1 TYR D 545 140.409 181.868 136.680 1.00200.02 ATOM 111 CE2 TYR D 545 139.614 184.063 136.156 1.00200.02 ATOM 112 CZ TYR D 545 140.654 183.204 136.443 1.00200.02 ATOM 113 OH TYR D 545 141.943 183.683 136.494 1.00200.02 ATOM 114 N ILE D 546 134.879 179.039 134.884 1.00213.24 ATOM 115 CA ILE D 546 133.644 178.264 134.899 1.00213.24 ATOM 116 C ILE D 546 133.752 177.216 135.997 1.00213.24 ATOM 117 O ILE D 546 134.784 176.548 136.126 1.00213.24 ATOM 118 CB ILE D 546 133.373 177.612 133.531 1.00213.24 ATOM 119 CG1 ILE D 546 133.174 178.693 132.466 1.00213.24 ATOM 120 CG2 ILE D 546 132.157 176.700 133.599 1.00213.24 ATOM 121 CD1 ILE D 546 133.160 178.170 131.051 1.00213.24 ATOM 122 N LYS D 547 132.686 177.077 136.790 1.00237.04 ATOM 123 CA LYS D 547 132.688 176.184 137.939 1.00237.04 ATOM 124 C LYS D 547 131.788 174.967 137.784 1.00237.04 ATOM 125 O LYS D 547 131.998 173.976 138.491 1.00237.04 ATOM 126 CB LYS D 547 132.259 176.943 139.203 1.00237.04 ATOM 127 CG LYS D 547 130.817 177.423 139.165 1.00237.04 ATOM 128 CD LYS D 547 130.443 178.190 140.421 1.00237.04 ATOM 129 CE LYS D 547 128.990 178.637 140.373 1.00237.04 ATOM 130 NZ LYS D 547 128.594 179.388 141.594 1.00237.04 ATOM 131 N ASP D 548 130.802 175.009 136.893 1.00245.07 ATOM 132 CA ASP D 548 129.811 173.952 136.781 1.00245.07 ATOM 133 C ASP D 548 129.801 173.373 135.372 1.00245.07 ATOM 134 O ASP D 548 130.298 173.981 134.420 1.00245.07 ATOM 135 CB ASP D 548 128.412 174.465 137.143 1.00245.07 ATOM 136 CG ASP D 548 128.278 174.803 138.615 1.00245.07 ATOM 137 OD1 ASP D 548 128.979 174.176 139.436 1.00245.07 ATOM 138 OD2 ASP D 548 127.474 175.698 138.950 1.00245.07 ATOM 139 N ASP D 549 129.222 172.176 135.256 1.00237.81 ATOM 140 CA ASP D 549 129.117 171.524 133.954 1.00237.81 ATOM 141 C ASP D 549 128.064 172.202 133.087 1.00237.81 ATOM 142 O ASP D 549 128.269 172.388 131.881 1.00237.81 ATOM 143 CB ASP D 549 128.795 170.040 134.144 1.00237.81 ATOM 144 CG ASP D 549 128.933 169.235 132.861 1.00237.81 ATOM 145 OD1 ASP D 549 129.264 169.819 131.807 1.00237.81 ATOM 146 OD2 ASP D 549 128.711 168.007 132.909 1.00237.81 ATOM 147 N GLU D 550 126.930 172.581 133.682 1.00239.22 ATOM 148 CA GLU D 550 125.900 173.285 132.924 1.00239.22 ATOM 149 C GLU D 550 126.398 174.646 132.455 1.00239.22 ATOM 150 O GLU D 550 126.093 175.076 131.336 1.00239.22 ATOM 151 CB GLU D 550 124.635 173.437 133.770 1.00239.22 ATOM 152 CG GLU D 550 123.476 174.092 133.036 1.00239.22 ATOM 153 CD GLU D 550 122.224 174.184 133.887 1.00239.22 ATOM 154 OE1 GLU D 550 122.268 173.753 135.059 1.00239.22 ATOM 155 OE2 GLU D 550 121.198 174.687 133.385 1.00239.22 ATOM 156 N ALA D 551 127.168 175.339 133.298 1.00229.16 ATOM 157 CA ALA D 551 127.759 176.606 132.883 1.00229.16 ATOM 158 C ALA D 551 128.731 176.403 131.728 1.00229.16 ATOM 159 O ALA D 551 128.765 177.205 130.787 1.00229.16 ATOM 160 CB ALA D 551 128.460 177.273 134.066 1.00229.16 ATOM 161 N MET D 552 129.524 175.330 131.779 1.00245.71 ATOM 162 CA MET D 552 130.434 175.026 130.679 1.00245.71 ATOM 163 C MET D 552 129.668 174.746 129.393 1.00245.71 ATOM 164 O MET D 552 130.063 175.202 128.313 1.00245.71 ATOM 165 CB MET D 552 131.317 173.834 131.046 1.00245.71 ATOM 166 CG MET D 552 132.403 173.526 130.029 1.00245.71 ATOM 167 SD MET D 552 133.643 174.829 129.921 1.00245.71 ATOM 168 CE MET D 552 134.273 174.563 128.267 1.00245.71 ATOM 169 N ASP D 553 128.564 174.001 129.489 1.00240.97 ATOM 170 CA ASP D 553 127.766 173.705 128.304 1.00240.97 ATOM 171 C ASP D 553 127.146 174.970 127.726 1.00240.97 ATOM 172 O ASP D 553 127.131 175.163 126.504 1.00240.97 ATOM 173 CB ASP D 553 126.683 172.682 128.646 1.00240.97 ATOM 174 CG ASP D 553 127.253 171.311 128.953 1.00240.97 ATOM 175 OD1 ASP D 553 128.323 170.975 128.404 1.00240.97 ATOM 176 OD2 ASP D 553 126.632 170.571 129.744 1.00240.97 ATOM 177 N GLN D 554 126.629 175.847 128.591 1.00244.79 ATOM 178 CA GLN D 554 126.053 177.100 128.113 1.00244.79 ATOM 179 C GLN D 554 127.115 177.984 127.471 1.00244.79 ATOM 180 O GLN D 554 126.854 178.646 126.460 1.00244.79 ATOM 181 CB GLN D 554 125.363 177.834 129.263 1.00244.79 ATOM 182 CG GLN D 554 124.128 177.125 129.794 1.00244.79 ATOM 183 CD GLN D 554 123.481 177.868 130.946 1.00244.79 ATOM 184 OE1 GLN D 554 123.989 178.891 131.403 1.00244.79 ATOM 185 NE2 GLN D 554 122.352 177.355 131.422 1.00244.79 ATOM 186 N TYR D 555 128.325 177.997 128.035 1.00278.18 ATOM 187 CA TYR D 555 129.410 178.767 127.436 1.00278.18 ATOM 188 C TYR D 555 129.798 178.204 126.074 1.00278.18 ATOM 189 O TYR D 555 130.059 178.963 125.134 1.00278.18 ATOM 190 CB TYR D 555 130.615 178.792 128.374 1.00278.18 ATOM 191 CG TYR D 555 131.778 179.608 127.859 1.00278.18 ATOM 192 CD1 TYR D 555 131.748 180.996 127.894 1.00278.18 ATOM 193 CD2 TYR D 555 132.907 178.990 127.338 1.00278.18 ATOM 194 CE1 TYR D 555 132.809 181.746 127.425 1.00278.18 ATOM 195 CE2 TYR D 555 133.973 179.732 126.866 1.00278.18 ATOM 196 CZ TYR D 555 133.919 181.109 126.912 1.00278.18 ATOM 197 OH TYR D 555 134.979 181.850 126.443 1.00278.18 ATOM 198 N GLN D 556 129.844 176.875 125.951 1.00292.61 ATOM 199 CA GLN D 556 130.140 176.263 124.659 1.00292.61 ATOM 200 C GLN D 556 129.066 176.600 123.632 1.00292.61 ATOM 201 O GLN D 556 129.376 176.879 122.468 1.00292.61 ATOM 202 CB GLN D 556 130.279 174.748 124.811 1.00292.61 ATOM 203 CG GLN D 556 131.491 174.306 125.613 1.00292.61 ATOM 204 CD GLN D 556 131.573 172.798 125.756 1.00292.61 ATOM 205 OE1 GLN D 556 130.684 172.072 125.312 1.00292.61 ATOM 206 NE2 GLN D 556 132.645 172.319 126.376 1.00292.61 ATOM 207 N ILE D 557 127.797 176.579 124.045 1.00334.64 ATOM 208 CA ILE D 557 126.713 176.928 123.131 1.00334.64 ATOM 209 C ILE D 557 126.811 178.392 122.717 1.00334.64 ATOM 210 O ILE D 557 126.566 178.741 121.556 1.00334.64 ATOM 211 CB ILE D 557 125.350 176.605 123.769 1.00334.64 ATOM 212 CG1 ILE D 557 125.213 175.099 124.003 1.00334.64 ATOM 213 CG2 ILE D 557 124.211 177.110 122.896 1.00334.64 ATOM 214 CD1 ILE D 557 124.023 174.719 124.856 1.00334.64 ATOM 215 N SER D 558 127.180 179.270 123.654 1.00298.43 ATOM 216 CA SER D 558 127.309 180.687 123.329 1.00298.43 ATOM 217 C SER D 558 128.462 180.932 122.363 1.00298.43 ATOM 218 O SER D 558 128.340 181.743 121.437 1.00298.43 ATOM 219 CB SER D 558 127.496 181.502 124.608 1.00298.43 ATOM 220 OG SER D 558 127.655 182.879 124.315 1.00298.43 ATOM 221 N ILE D 559 129.589 180.247 122.564 1.00313.99 ATOM 222 CA ILE D 559 130.722 180.406 121.656 1.00313.99 ATOM 223 C ILE D 559 130.392 179.837 120.281 1.00313.99 ATOM 224 O ILE D 559 130.764 180.412 119.250 1.00313.99 ATOM 225 CB ILE D 559 131.986 179.759 122.252 1.00313.99 ATOM 226 CG1 ILE D 559 132.352 180.424 123.580 1.00313.99 ATOM 227 CG2 ILE D 559 133.148 179.847 121.274 1.00313.99 ATOM 228 CD1 ILE D 559 132.663 181.900 123.457 1.00313.99 ATOM 229 N ALA D 560 129.682 178.708 120.237 1.00346.53 ATOM 230 CA ALA D 560 129.311 178.102 118.965 1.00346.53 ATOM 231 C ALA D 560 128.273 178.914 118.201 1.00346.53 ATOM 232 O ALA D 560 127.994 178.592 117.041 1.00346.53 ATOM 233 CB ALA D 560 128.789 176.682 119.191 1.00346.53 ATOM 234 N LEU D 561 127.698 179.949 118.814 1.00371.85 ATOM 235 CA LEU D 561 126.682 180.760 118.157 1.00371.85 ATOM 236 C LEU D 561 127.051 182.238 118.202 1.00371.85 ATOM 237 O LEU D 561 126.217 183.081 118.548 1.00371.85 ATOM 238 CB LEU D 561 125.315 180.534 118.807 1.00371.85 ATOM 239 CG LEU D 561 124.716 179.134 118.654 1.00371.85 ATOM 240 CD1 LEU D 561 123.434 179.007 119.463 1.00371.85 ATOM 241 CD2 LEU D 561 124.463 178.815 117.189 1.00371.85 ATOM 242 N ASP D 562 128.298 182.562 117.856 1.00339.85 ATOM 243 CA ASP D 562 128.777 183.945 117.872 1.00339.85 ATOM 244 C ASP D 562 128.236 184.690 116.650 1.00339.85 ATOM 245 O ASP D 562 128.935 184.953 115.669 1.00339.85 ATOM 246 CB ASP D 562 130.297 183.986 117.924 1.00339.85 ATOM 247 CG ASP D 562 130.849 183.511 119.254 1.00339.85 ATOM 248 OD1 ASP D 562 130.152 183.669 120.278 1.00339.85 ATOM 249 OD2 ASP D 562 131.982 182.986 119.276 1.00339.85 TER