HEADER HYDROLASE 31-DEC-69 6RXQ TITLE Crystal structure of CobB Ac2 (A76G,I131C,V162A) in complex with TITLE 2 H4K16Cr-2'OH-ADPr peptide intermediate after soaking COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-dependent protein deacylase; COMPND 3 CHAIN: A, B, C, D; COMPND 4 MUTATION: YES; COMPND 5 EC: 3.5.1.-; COMPND 6 FRAGMENT: ; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 Histone H4; COMPND 10 CHAIN: E, F, G, H; COMPND 11 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.70 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 146 REMARK 465 ASP A 147 REMARK 465 LYS A 148 REMARK 465 CYS A 149 REMARK 465 HIS A 150 REMARK 465 CYS A 151 REMARK 465 CYS A 152 REMARK 465 GLN A 153 REMARK 465 PHE A 154 REMARK 465 PRO A 155 REMARK 465 ALA A 156 DBREF 6RXQ A 40 279 UNP P75960 NPD_ECOLI 40 279 DBREF 6RXQ E 12 22 UNP P02309 H4_YEAST 13 23 SEQRES 1 A 39 GLU LEU LEU LYS VAL ARG CYS SER GLN SER GLY GLN ALA SEQRES 2 A 39 LEU ASP TRP THR GLY ASP VAL THR PRO GLU ASP LYS CYS SEQRES 3 A 39 HIS CYS CYS GLN PHE PRO ALA PRO LEU ARG PRO HIS VAL ATOM 1 N GLU A 149 76.959 69.767 21.739 1.00 35.73 ATOM 2 CA GLU A 149 77.556 69.096 22.889 1.00 34.50 ATOM 3 C GLU A 149 78.939 69.638 23.223 1.00 33.49 ATOM 4 O GLU A 149 79.781 69.799 22.350 1.00 38.95 ATOM 5 CB GLU A 149 77.667 67.589 22.627 1.00 41.43 ATOM 6 CG GLU A 149 76.354 66.909 22.309 1.00 38.50 ATOM 7 CD GLU A 149 76.526 65.448 21.958 1.00 43.76 ATOM 8 OE1 GLU A 149 76.143 65.073 20.836 1.00 37.89 ATOM 9 OE2 GLU A 149 77.033 64.686 22.811 1.00 46.44 ATOM 10 N LEU A 150 79.174 69.869 24.507 1.00 34.61 ATOM 11 CA LEU A 150 80.436 70.416 24.979 1.00 36.84 ATOM 12 C LEU A 150 81.582 69.422 24.780 1.00 46.33 ATOM 13 O LEU A 150 82.736 69.822 24.632 1.00 45.85 ATOM 14 CB LEU A 150 80.307 70.800 26.446 1.00 34.84 ATOM 15 CG LEU A 150 81.042 71.991 27.053 1.00 50.54 ATOM 16 CD1 LEU A 150 80.946 73.233 26.175 1.00 47.65 ATOM 17 CD2 LEU A 150 80.449 72.260 28.429 1.00 46.77 ATOM 18 N LEU A 151 81.260 68.127 24.786 1.00 44.60 ATOM 19 CA LEU A 151 82.272 67.086 24.620 1.00 49.72 ATOM 20 C LEU A 151 82.464 66.701 23.160 1.00 52.44 ATOM 21 O LEU A 151 82.872 65.577 22.848 1.00 49.55 ATOM 22 CB LEU A 151 81.912 65.846 25.433 1.00 38.61 ATOM 23 CG LEU A 151 81.867 66.069 26.940 1.00 41.39 ATOM 24 CD1 LEU A 151 81.361 64.830 27.644 1.00 52.65 ATOM 25 CD2 LEU A 151 83.234 66.500 27.487 1.00 46.45 ATOM 26 N LYS A 152 82.150 67.632 22.267 1.00 45.65 ATOM 27 CA LYS A 152 82.429 67.459 20.848 1.00 38.09 ATOM 28 C LYS A 152 82.953 68.757 20.258 1.00 58.35 ATOM 29 O LYS A 152 82.590 69.850 20.698 1.00 44.41 ATOM 30 CB LYS A 152 81.185 67.001 20.081 1.00 39.04 ATOM 31 CG LYS A 152 80.755 65.564 20.370 1.00 48.71 ATOM 32 CD LYS A 152 79.580 65.162 19.503 1.00 53.52 ATOM 33 CE LYS A 152 79.127 63.733 19.785 1.00 58.15 ATOM 34 NZ LYS A 152 78.007 63.346 18.877 1.00 56.16 ATOM 35 N VAL A 153 83.816 68.628 19.261 1.00 47.94 ATOM 36 CA VAL A 153 84.262 69.777 18.485 1.00 42.76 ATOM 37 C VAL A 153 83.971 69.539 17.021 1.00 42.32 ATOM 38 O VAL A 153 83.619 68.429 16.623 1.00 56.51 ATOM 39 CB VAL A 153 85.755 70.073 18.678 1.00 46.72 ATOM 40 CG1 VAL A 153 86.038 70.378 20.132 1.00 39.64 ATOM 41 CG2 VAL A 153 86.606 68.915 18.162 1.00 64.18 ATOM 42 N ARG A 154 84.123 70.583 16.219 1.00 42.38 ATOM 43 CA ARG A 154 83.789 70.495 14.812 1.00 47.53 ATOM 44 C ARG A 154 84.873 71.088 13.940 1.00 60.37 ATOM 45 O ARG A 154 85.313 72.219 14.157 1.00 52.84 ATOM 46 CB ARG A 154 82.477 71.242 14.560 1.00 55.71 ATOM 47 CG ARG A 154 81.786 70.942 13.256 1.00 61.20 ATOM 48 CD ARG A 154 80.692 71.973 13.005 1.00 60.85 ATOM 49 NE ARG A 154 79.697 71.990 14.076 1.00 62.78 ATOM 50 CZ ARG A 154 78.884 73.012 14.333 1.00 42.16 ATOM 51 NH1 ARG A 154 78.938 74.118 13.595 1.00 44.88 ATOM 52 NH2 ARG A 154 78.014 72.926 15.333 1.00 48.23 ATOM 53 N CYS A 155 85.314 70.304 12.962 1.00 74.63 ATOM 54 CA CYS A 155 86.228 70.796 11.946 1.00 82.81 ATOM 55 C CYS A 155 85.380 71.631 10.999 1.00 78.95 ATOM 56 O CYS A 155 84.623 71.085 10.201 1.00 90.49 ATOM 57 CB CYS A 155 86.935 69.643 11.231 1.00 76.56 ATOM 58 SG CYS A 155 88.132 70.151 9.977 1.00117.01 ATOM 59 N SER A 156 85.507 72.950 11.096 1.00 89.13 ATOM 60 CA SER A 156 84.589 73.874 10.426 1.00100.13 ATOM 61 C SER A 156 84.554 73.791 8.893 1.00104.18 ATOM 62 O SER A 156 83.584 74.238 8.278 1.00103.69 ATOM 63 CB SER A 156 84.904 75.308 10.845 1.00 84.54 ATOM 64 OG SER A 156 83.886 76.187 10.404 1.00 80.51 ATOM 65 N GLN A 157 85.586 73.219 8.275 1.00 99.17 ATOM 66 CA GLN A 157 85.565 73.034 6.824 1.00104.95 ATOM 67 C GLN A 157 84.619 71.895 6.512 1.00104.97 ATOM 68 O GLN A 157 83.803 71.968 5.590 1.00108.45 ATOM 69 CB GLN A 157 86.951 72.720 6.257 1.00105.64 ATOM 70 CG GLN A 157 86.959 72.634 4.729 1.00106.15 ATOM 71 CD GLN A 157 88.349 72.492 4.144 1.00108.80 ATOM 72 OE1 GLN A 157 89.064 71.530 4.434 1.00101.67 ATOM 73 NE2 GLN A 157 88.739 73.449 3.311 1.00101.60 ATOM 74 N SER A 158 84.742 70.832 7.293 1.00106.53 ATOM 75 CA SER A 158 83.841 69.708 7.167 1.00105.67 ATOM 76 C SER A 158 82.602 70.030 7.988 1.00109.31 ATOM 77 O SER A 158 82.462 71.134 8.517 1.00102.03 ATOM 78 CB SER A 158 84.500 68.415 7.653 1.00 95.19 ATOM 79 OG SER A 158 85.294 68.652 8.804 1.00 98.67 ATOM 80 N GLY A 159 81.689 69.077 8.074 1.00110.79 ATOM 81 CA GLY A 159 80.495 69.263 8.869 1.00 99.83 ATOM 82 C GLY A 159 80.615 68.274 10.004 1.00 93.69 ATOM 83 O GLY A 159 79.774 68.224 10.905 1.00 89.98 ATOM 84 N GLN A 160 81.690 67.491 9.947 1.00 85.12 ATOM 85 CA GLN A 160 81.918 66.399 10.882 1.00 90.42 ATOM 86 C GLN A 160 82.192 66.842 12.320 1.00 72.92 ATOM 87 O GLN A 160 83.063 67.674 12.578 1.00 72.33 ATOM 88 CB GLN A 160 83.085 65.532 10.393 1.00 85.60 ATOM 89 CG GLN A 160 83.105 64.068 10.898 1.00 90.52 ATOM 90 CD GLN A 160 81.741 63.366 10.901 1.00 90.87 ATOM 91 OE1 GLN A 160 80.796 63.772 10.218 1.00 95.35 ATOM 92 NE2 GLN A 160 81.637 62.311 11.696 1.00 94.41 ATOM 93 N ALA A 161 81.438 66.261 13.248 1.00 60.43 ATOM 94 CA ALA A 161 81.641 66.482 14.673 1.00 55.77 ATOM 95 C ALA A 161 82.574 65.400 15.186 1.00 69.49 ATOM 96 O ALA A 161 82.455 64.241 14.790 1.00 70.47 ATOM 97 CB ALA A 161 80.316 66.456 15.428 1.00 56.01 ATOM 98 N LEU A 162 83.507 65.771 16.052 1.00 60.18 ATOM 99 CA LEU A 162 84.473 64.812 16.570 1.00 58.73 ATOM 100 C LEU A 162 84.431 64.812 18.084 1.00 48.91 ATOM 101 O LEU A 162 84.278 65.863 18.700 1.00 61.95 ATOM 102 CB LEU A 162 85.886 65.151 16.086 1.00 57.02 ATOM 103 CG LEU A 162 86.059 65.497 14.608 1.00 77.43 ATOM 104 CD1 LEU A 162 87.313 66.332 14.406 1.00 78.34 ATOM 105 CD2 LEU A 162 86.104 64.239 13.756 1.00 65.08 ATOM 106 N ASP A 163 84.563 63.637 18.687 1.00 44.95 ATOM 107 CA ASP A 163 84.608 63.541 20.138 1.00 42.86 ATOM 108 C ASP A 163 85.844 64.269 20.666 1.00 55.76 ATOM 109 O ASP A 163 86.905 64.219 20.049 1.00 67.86 ATOM 110 CB ASP A 163 84.605 62.080 20.578 1.00 69.06 ATOM 111 CG ASP A 163 83.353 61.347 20.139 1.00 65.86 ATOM 112 OD1 ASP A 163 82.284 61.576 20.744 1.00 69.17 ATOM 113 OD2 ASP A 163 83.437 60.547 19.182 1.00 79.56 ATOM 114 N TRP A 164 85.705 64.940 21.805 1.00 54.25 ATOM 115 CA TRP A 164 86.774 65.786 22.326 1.00 46.93 ATOM 116 C TRP A 164 86.529 66.148 23.782 1.00 58.46 ATOM 117 O TRP A 164 85.537 66.798 24.105 1.00 64.65 ATOM 118 CB TRP A 164 86.895 67.057 21.486 1.00 56.41 ATOM 119 CG TRP A 164 88.224 67.739 21.594 1.00 61.22 ATOM 120 CD1 TRP A 164 88.648 68.548 22.604 1.00 49.73 ATOM 121 CD2 TRP A 164 89.297 67.686 20.644 1.00 61.80 ATOM 122 NE1 TRP A 164 89.922 68.997 22.351 1.00 56.48 ATOM 123 CE2 TRP A 164 90.344 68.483 21.153 1.00 64.55 ATOM 124 CE3 TRP A 164 89.476 67.039 19.416 1.00 57.69 ATOM 125 CZ2 TRP A 164 91.552 68.651 20.476 1.00 53.80 ATOM 126 CZ3 TRP A 164 90.677 67.206 18.746 1.00 61.33 ATOM 127 CH2 TRP A 164 91.697 68.009 19.276 1.00 64.56 ATOM 128 N THR A 165 87.437 65.738 24.662 1.00 63.64 ATOM 129 CA THR A 165 87.234 65.923 26.094 1.00 45.97 ATOM 130 C THR A 165 88.217 66.910 26.709 1.00 40.33 ATOM 131 O THR A 165 88.016 67.372 27.830 1.00 51.12 ATOM 132 CB THR A 165 87.357 64.589 26.854 1.00 49.66 ATOM 133 OG1 THR A 165 88.691 64.084 26.714 1.00 65.51 ATOM 134 CG2 THR A 165 86.366 63.572 26.313 1.00 57.19 ATOM 135 N GLY A 166 89.284 67.221 25.983 1.00 45.89 ATOM 136 CA GLY A 166 90.315 68.096 26.507 1.00 54.75 ATOM 137 C GLY A 166 90.224 69.501 25.949 1.00 61.62 ATOM 138 O GLY A 166 89.259 69.843 25.265 1.00 52.77 ATOM 139 N ASP A 167 91.228 70.319 26.248 1.00 58.40 ATOM 140 CA ASP A 167 91.291 71.680 25.723 1.00 57.24 ATOM 141 C ASP A 167 91.413 71.687 24.204 1.00 58.07 ATOM 142 O ASP A 167 91.814 70.696 23.594 1.00 55.99 ATOM 143 CB ASP A 167 92.471 72.443 26.331 1.00 57.35 ATOM 144 CG ASP A 167 92.257 72.789 27.787 1.00 66.67 ATOM 145 OD1 ASP A 167 91.276 72.295 28.381 1.00 71.79 ATOM 146 OD2 ASP A 167 93.074 73.558 28.339 1.00 68.44 ATOM 147 N VAL A 168 91.044 72.809 23.599 1.00 45.13 ATOM 148 CA VAL A 168 91.287 73.027 22.182 1.00 57.73 ATOM 149 C VAL A 168 92.360 74.092 22.031 1.00 63.92 ATOM 150 O VAL A 168 92.158 75.240 22.421 1.00 58.31 ATOM 151 CB VAL A 168 90.017 73.469 21.433 1.00 45.96 ATOM 152 CG1 VAL A 168 90.344 73.784 19.981 1.00 46.20 ATOM 153 CG2 VAL A 168 88.941 72.395 21.529 1.00 62.74 ATOM 154 N THR A 169 93.506 73.708 21.479 1.00 79.53 ATOM 155 CA THR A 169 94.588 74.656 21.239 1.00 74.73 ATOM 156 C THR A 169 94.776 74.901 19.742 1.00 74.76 ATOM 157 O THR A 169 94.171 74.210 18.921 1.00 84.18 ATOM 158 CB THR A 169 95.908 74.136 21.841 1.00 72.94 ATOM 159 OG1 THR A 169 96.309 72.948 21.146 1.00 66.08 ATOM 160 CG2 THR A 169 95.735 73.822 23.319 1.00 70.61 ATOM 161 N PRO A 170 95.623 75.881 19.375 1.00 88.58 ATOM 162 CA PRO A 170 95.952 76.039 17.954 1.00 84.18 ATOM 163 C PRO A 170 96.711 74.838 17.385 1.00 72.22 ATOM 164 O PRO A 170 97.399 74.143 18.134 1.00 66.25 ATOM 165 CB PRO A 170 96.826 77.294 17.939 1.00 87.28 ATOM 166 CG PRO A 170 96.336 78.089 19.099 1.00 80.84 ATOM 167 CD PRO A 170 95.994 77.078 20.156 1.00 77.67 ATOM 168 N PRO A 182 90.978 75.309 11.572 1.00 61.52 ATOM 169 CA PRO A 182 90.566 75.832 12.879 1.00 76.13 ATOM 170 C PRO A 182 89.338 75.109 13.435 1.00 86.32 ATOM 171 O PRO A 182 88.254 75.182 12.850 1.00 81.12 ATOM 172 CB PRO A 182 90.253 77.300 12.584 1.00 56.93 ATOM 173 CG PRO A 182 89.858 77.312 11.149 1.00 77.00 ATOM 174 CD PRO A 182 90.682 76.250 10.478 1.00 64.82 ATOM 175 N LEU A 183 89.518 74.414 14.554 1.00 63.93 ATOM 176 CA LEU A 183 88.429 73.686 15.198 1.00 57.48 ATOM 177 C LEU A 183 87.553 74.625 16.017 1.00 56.38 ATOM 178 O LEU A 183 88.036 75.613 16.566 1.00 51.36 ATOM 179 CB LEU A 183 88.978 72.583 16.106 1.00 55.64 ATOM 180 CG LEU A 183 89.626 71.355 15.469 1.00 63.62 ATOM 181 CD1 LEU A 183 90.300 70.520 16.540 1.00 57.44 ATOM 182 CD2 LEU A 183 88.593 70.535 14.728 1.00 59.49 ATOM 183 N ARG A 184 86.265 74.308 16.105 1.00 50.66 ATOM 184 CA ARG A 184 85.357 75.071 16.954 1.00 39.70 ATOM 185 C ARG A 184 84.535 74.135 17.838 1.00 42.68 ATOM 186 O ARG A 184 84.397 72.949 17.531 1.00 43.86 ATOM 187 CB ARG A 184 84.432 75.946 16.106 1.00 39.26 ATOM 188 CG ARG A 184 83.566 75.161 15.135 1.00 48.00 ATOM 189 CD ARG A 184 82.416 76.011 14.629 1.00 48.87 ATOM 190 NE ARG A 184 81.305 76.081 15.579 1.00 44.31 ATOM 191 CZ ARG A 184 80.212 76.815 15.381 1.00 45.73 ATOM 192 NH1 ARG A 184 80.110 77.566 14.289 1.00 42.20 ATOM 193 NH2 ARG A 184 79.236 76.823 16.280 1.00 35.20 ATOM 194 N PRO A 185 84.000 74.661 18.950 1.00 38.78 ATOM 195 CA PRO A 185 83.059 73.879 19.756 1.00 37.89 ATOM 196 C PRO A 185 81.872 73.416 18.913 1.00 47.01 ATOM 197 O PRO A 185 81.403 74.161 18.053 1.00 39.12 ATOM 198 CB PRO A 185 82.615 74.871 20.837 1.00 38.09 ATOM 199 CG PRO A 185 83.748 75.823 20.949 1.00 39.14 ATOM 200 CD PRO A 185 84.310 75.962 19.571 1.00 37.60 ATOM 201 N HIS A 186 81.427 72.184 19.129 1.00 34.15 ATOM 202 CA HIS A 186 80.240 71.671 18.460 1.00 40.81 ATOM 203 C HIS A 186 79.020 72.160 19.219 1.00 39.53 ATOM 204 O HIS A 186 78.307 71.395 19.861 1.00 40.93 ATOM 205 CB HIS A 186 80.255 70.147 18.396 1.00 49.59 ATOM 206 CG HIS A 186 79.161 69.575 17.553 1.00 39.84 ATOM 207 ND1 HIS A 186 78.951 69.968 16.247 1.00 47.24 ATOM 208 CD2 HIS A 186 78.209 68.655 17.828 1.00 41.12 ATOM 209 CE1 HIS A 186 77.921 69.304 15.752 1.00 45.87 ATOM 210 NE2 HIS A 186 77.451 68.502 16.690 1.00 41.56 ATOM 211 N VAL A 187 78.790 73.458 19.130 1.00 37.38 ATOM 212 CA VAL A 187 77.796 74.129 19.946 1.00 32.64 ATOM 213 C VAL A 187 77.023 75.038 18.998 1.00 39.43 ATOM 214 O VAL A 187 77.629 75.657 18.140 1.00 44.56 ATOM 215 CB VAL A 187 78.483 74.907 21.081 1.00 36.59 ATOM 216 CG1 VAL A 187 77.781 76.191 21.382 1.00 53.26 ATOM 217 CG2 VAL A 187 78.642 74.031 22.326 1.00 42.35 ATOM 218 C3 KMQ A 101 71.914 78.528 23.209 0.32 47.79 ATOM 219 C21 KMQ A 101 73.093 77.662 23.446 0.32 54.54 ATOM 220 C1 KMQ A 101 73.653 76.830 22.581 0.32 35.05 ATOM 221 C7 KMQ A 101 74.844 76.038 23.027 0.32 49.66 ATOM 222 O2D KMQ A 101 71.471 79.358 24.308 0.32 49.75 ATOM 223 C2D KMQ A 101 71.465 78.744 25.592 0.32 49.92 ATOM 224 C3D KMQ A 101 70.451 77.620 25.703 0.32 45.47 ATOM 225 O3D KMQ A 101 70.633 76.523 24.795 0.32 54.08 ATOM 226 C1D KMQ A 101 70.760 79.774 26.440 0.32 36.12 ATOM 227 O1D KMQ A 101 71.264 81.084 26.163 0.32 44.17 ATOM 228 O4D KMQ A 101 69.385 79.664 26.037 0.32 33.96 ATOM 229 C4D KMQ A 101 69.152 78.367 25.466 0.32 36.17 ATOM 230 C5D KMQ A 101 67.974 77.682 26.141 0.32 30.57 ATOM 231 O5D KMQ A 101 67.717 78.368 27.358 0.32 32.17 ATOM 232 PB KMQ A 101 67.265 77.605 28.698 0.32 30.43 ATOM 233 O2B KMQ A 101 65.813 77.913 28.947 0.32 28.43 ATOM 234 O1B KMQ A 101 67.520 76.126 28.586 0.32 31.31 ATOM 235 O3A KMQ A 101 68.176 78.193 29.881 0.32 29.74 ATOM 236 PA KMQ A 101 67.757 79.509 30.703 0.32 32.67 ATOM 237 O1A KMQ A 101 68.936 79.921 31.546 0.32 40.69 ATOM 238 O2A KMQ A 101 67.322 80.602 29.754 0.32 33.71 ATOM 239 O5' KMQ A 101 66.522 79.118 31.642 0.32 34.61 ATOM 240 C5' KMQ A 101 66.693 78.074 32.598 0.32 29.39 ATOM 241 C4' KMQ A 101 65.376 77.883 33.325 0.32 31.64 ATOM 242 O4' KMQ A 101 65.511 76.831 34.283 0.32 32.90 ATOM 243 C1' KMQ A 101 64.942 77.235 35.523 0.32 31.53 ATOM 244 C2' KMQ A 101 65.030 78.745 35.551 0.32 30.53 ATOM 245 O2' KMQ A 101 63.902 79.259 36.262 0.32 33.33 ATOM 246 C3' KMQ A 101 64.990 79.139 34.086 0.32 26.32 ATOM 247 O3' KMQ A 101 63.660 79.491 33.716 0.32 35.59 ATOM 248 N9 KMQ A 101 65.714 76.637 36.632 0.32 30.68 ATOM 249 C8 KMQ A 101 66.847 77.108 37.191 0.32 34.11 ATOM 250 N7 KMQ A 101 67.274 76.279 38.182 0.32 35.32 ATOM 251 C5 KMQ A 101 66.403 75.252 38.248 0.32 31.79 ATOM 252 C4 KMQ A 101 65.382 75.492 37.221 0.32 32.40 ATOM 253 C6 KMQ A 101 66.249 74.027 39.060 0.32 36.33 ATOM 254 N6 KMQ A 101 67.141 73.718 40.034 0.32 38.27 ATOM 255 N1 KMQ A 101 65.189 73.229 38.796 0.32 36.54 ATOM 256 C2 KMQ A 101 64.290 73.517 37.837 0.32 34.77 ATOM 257 N3 KMQ A 101 64.368 74.609 37.059 0.32 32.13 TER