HEADER HYDROLASE 31-DEC-69 6RXR TITLE Crystal structure of CobB Ac2 (A76G, I131C, V162G) in complex with TITLE 2 H4K16Cr-2'OH-ADPr peptide intermediate after co-crystallisation COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-dependent protein deacylase; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.5.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 Histone H4; COMPND 8 CHAIN: E, F, G, H; COMPND 9 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.70 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 146 REMARK 465 ASP A 147 REMARK 465 LYS A 148 REMARK 465 CYS A 149 REMARK 465 HIS A 150 REMARK 465 CYS A 151 REMARK 465 CYS A 152 REMARK 465 GLN A 153 REMARK 465 PHE A 154 REMARK 465 PRO A 155 REMARK 465 ALA A 156 DBREF 6RXR A 40 279 UNP P75960 NPD_ECOLI 40 279 DBREF 6RXR E 12 22 UNP P02309 H4_YEAST 13 23 SEQRES 1 A 39 GLU LEU LEU LYS VAL ARG CYS SER GLN SER GLY GLN ALA SEQRES 2 A 39 LEU ASP TRP THR GLY ASP VAL THR PRO GLU ASP LYS CYS SEQRES 3 A 39 HIS CYS CYS GLN PHE PRO ALA PRO LEU ARG PRO HIS VAL ATOM 1 N GLU A 149 76.960 69.758 21.723 1.00 36.55 ATOM 2 CA GLU A 149 77.554 69.091 22.879 1.00 35.09 ATOM 3 C GLU A 149 78.934 69.640 23.217 1.00 33.25 ATOM 4 O GLU A 149 79.773 69.822 22.341 1.00 38.11 ATOM 5 CB GLU A 149 77.664 67.583 22.627 1.00 41.66 ATOM 6 CG GLU A 149 76.347 66.902 22.314 1.00 38.49 ATOM 7 CD GLU A 149 76.514 65.438 21.970 1.00 42.73 ATOM 8 OE1 GLU A 149 76.128 65.053 20.849 1.00 37.84 ATOM 9 OE2 GLU A 149 77.022 64.677 22.822 1.00 45.79 ATOM 10 N LEU A 150 79.164 69.866 24.505 1.00 35.12 ATOM 11 CA LEU A 150 80.425 70.411 24.988 1.00 36.88 ATOM 12 C LEU A 150 81.577 69.427 24.785 1.00 44.76 ATOM 13 O LEU A 150 82.728 69.833 24.621 1.00 45.47 ATOM 14 CB LEU A 150 80.295 70.779 26.463 1.00 35.68 ATOM 15 CG LEU A 150 81.038 71.978 27.047 1.00 47.01 ATOM 16 CD1 LEU A 150 80.929 73.199 26.147 1.00 46.33 ATOM 17 CD2 LEU A 150 80.476 72.276 28.429 1.00 46.67 ATOM 18 N LEU A 151 81.262 68.133 24.798 1.00 44.71 ATOM 19 CA LEU A 151 82.278 67.096 24.640 1.00 48.85 ATOM 20 C LEU A 151 82.469 66.711 23.181 1.00 49.48 ATOM 21 O LEU A 151 82.890 65.595 22.869 1.00 50.92 ATOM 22 CB LEU A 151 81.923 65.856 25.457 1.00 40.50 ATOM 23 CG LEU A 151 81.878 66.072 26.966 1.00 42.18 ATOM 24 CD1 LEU A 151 81.379 64.823 27.669 1.00 50.86 ATOM 25 CD2 LEU A 151 83.248 66.493 27.492 1.00 46.99 ATOM 26 N LYS A 152 82.152 67.642 22.290 1.00 45.95 ATOM 27 CA LYS A 152 82.422 67.469 20.871 1.00 39.65 ATOM 28 C LYS A 152 82.941 68.772 20.290 1.00 56.08 ATOM 29 O LYS A 152 82.574 69.859 20.737 1.00 45.21 ATOM 30 CB LYS A 152 81.174 67.012 20.113 1.00 40.32 ATOM 31 CG LYS A 152 80.751 65.574 20.393 1.00 47.94 ATOM 32 CD LYS A 152 79.570 65.179 19.527 1.00 53.97 ATOM 33 CE LYS A 152 79.127 63.747 19.796 1.00 61.70 ATOM 34 NZ LYS A 152 78.004 63.358 18.895 1.00 56.70 ATOM 35 N VAL A 153 83.794 68.655 19.283 1.00 48.06 ATOM 36 CA VAL A 153 84.260 69.813 18.538 1.00 43.87 ATOM 37 C VAL A 153 83.967 69.602 17.072 1.00 45.49 ATOM 38 O VAL A 153 83.620 68.499 16.651 1.00 56.99 ATOM 39 CB VAL A 153 85.762 70.076 18.733 1.00 46.82 ATOM 40 CG1 VAL A 153 86.068 70.324 20.196 1.00 43.15 ATOM 41 CG2 VAL A 153 86.588 68.923 18.169 1.00 63.59 ATOM 42 N ARG A 154 84.111 70.656 16.286 1.00 44.33 ATOM 43 CA ARG A 154 83.780 70.549 14.883 1.00 47.62 ATOM 44 C ARG A 154 84.878 71.095 14.002 1.00 59.95 ATOM 45 O ARG A 154 85.341 72.220 14.180 1.00 53.72 ATOM 46 CB ARG A 154 82.482 71.311 14.606 1.00 54.30 ATOM 47 CG ARG A 154 81.782 70.948 13.315 1.00 58.22 ATOM 48 CD ARG A 154 80.691 71.965 13.013 1.00 57.43 ATOM 49 NE ARG A 154 79.691 71.997 14.077 1.00 60.06 ATOM 50 CZ ARG A 154 78.886 73.025 14.325 1.00 39.90 ATOM 51 NH1 ARG A 154 78.956 74.126 13.586 1.00 44.87 ATOM 52 NH2 ARG A 154 78.009 72.953 15.320 1.00 47.56 ATOM 53 N CYS A 155 85.292 70.273 13.047 1.00 75.21 ATOM 54 CA CYS A 155 86.218 70.704 12.026 1.00 81.73 ATOM 55 C CYS A 155 85.371 71.554 11.101 1.00 79.28 ATOM 56 O CYS A 155 84.555 71.023 10.370 1.00 91.04 ATOM 57 CB CYS A 155 86.845 69.502 11.313 1.00 77.70 ATOM 58 SG CYS A 155 87.897 69.900 9.908 1.00115.05 ATOM 59 N SER A 156 85.502 72.872 11.154 1.00 86.61 ATOM 60 CA SER A 156 84.514 73.709 10.467 1.00 97.51 ATOM 61 C SER A 156 84.504 73.666 8.934 1.00105.34 ATOM 62 O SER A 156 83.531 74.107 8.328 1.00101.81 ATOM 63 CB SER A 156 84.682 75.162 10.905 1.00 82.40 ATOM 64 OG SER A 156 83.579 75.936 10.460 1.00 84.13 ATOM 65 N GLN A 157 85.556 73.144 8.300 1.00102.49 ATOM 66 CA GLN A 157 85.505 73.014 6.836 1.00104.73 ATOM 67 C GLN A 157 84.742 71.724 6.617 1.00103.61 ATOM 68 O GLN A 157 84.055 71.526 5.598 1.00104.91 ATOM 69 CB GLN A 157 86.865 73.028 6.128 1.00104.00 ATOM 70 CG GLN A 157 87.908 71.919 6.341 1.00102.76 ATOM 71 CD GLN A 157 88.800 71.772 5.096 1.00105.45 ATOM 72 OE1 GLN A 157 88.602 70.884 4.261 1.00103.36 ATOM 73 NE2 GLN A 157 89.728 72.705 4.933 1.00101.21 ATOM 74 N SER A 158 84.893 70.838 7.594 1.00106.61 ATOM 75 CA SER A 158 84.136 69.604 7.661 1.00105.70 ATOM 76 C SER A 158 82.733 69.952 8.164 1.00105.90 ATOM 77 O SER A 158 82.472 71.085 8.560 1.00100.79 ATOM 78 CB SER A 158 84.788 68.626 8.617 1.00100.16 ATOM 79 OG SER A 158 83.768 68.029 9.403 1.00 98.95 ATOM 80 N GLY A 159 81.814 68.999 8.137 1.00108.37 ATOM 81 CA GLY A 159 80.536 69.215 8.792 1.00 99.57 ATOM 82 C GLY A 159 80.528 68.248 9.962 1.00 94.05 ATOM 83 O GLY A 159 79.644 68.244 10.827 1.00 90.45 ATOM 84 N GLN A 160 81.555 67.404 9.949 1.00 89.63 ATOM 85 CA GLN A 160 81.764 66.317 10.897 1.00 91.89 ATOM 86 C GLN A 160 82.080 66.798 12.306 1.00 72.05 ATOM 87 O GLN A 160 82.944 67.654 12.509 1.00 72.74 ATOM 88 CB GLN A 160 82.902 65.416 10.402 1.00 88.06 ATOM 89 CG GLN A 160 82.481 64.053 9.945 1.00 94.95 ATOM 90 CD GLN A 160 81.757 63.305 11.035 1.00 91.34 ATOM 91 OE1 GLN A 160 80.531 63.361 11.142 1.00 93.71 ATOM 92 NE2 GLN A 160 82.518 62.621 11.878 1.00 88.09 ATOM 93 N ALA A 161 81.362 66.252 13.276 1.00 59.73 ATOM 94 CA ALA A 161 81.642 66.520 14.676 1.00 56.52 ATOM 95 C ALA A 161 82.579 65.433 15.196 1.00 68.37 ATOM 96 O ALA A 161 82.463 64.271 14.805 1.00 71.95 ATOM 97 CB ALA A 161 80.361 66.568 15.489 1.00 59.05 ATOM 98 N LEU A 162 83.523 65.807 16.052 1.00 61.27 ATOM 99 CA LEU A 162 84.477 64.839 16.583 1.00 59.97 ATOM 100 C LEU A 162 84.434 64.835 18.103 1.00 49.67 ATOM 101 O LEU A 162 84.281 65.884 18.724 1.00 56.11 ATOM 102 CB LEU A 162 85.897 65.156 16.106 1.00 61.05 ATOM 103 CG LEU A 162 86.094 65.490 14.628 1.00 78.33 ATOM 104 CD1 LEU A 162 87.347 66.331 14.435 1.00 77.46 ATOM 105 CD2 LEU A 162 86.172 64.219 13.800 1.00 65.60 ATOM 106 N ASP A 163 84.565 63.655 18.702 1.00 46.80 ATOM 107 CA ASP A 163 84.610 63.551 20.155 1.00 43.58 ATOM 108 C ASP A 163 85.847 64.273 20.680 1.00 54.46 ATOM 109 O ASP A 163 86.909 64.217 20.064 1.00 66.66 ATOM 110 CB ASP A 163 84.608 62.088 20.597 1.00 67.68 ATOM 111 CG ASP A 163 83.358 61.350 20.158 1.00 64.38 ATOM 112 OD1 ASP A 163 82.287 61.581 20.758 1.00 69.65 ATOM 113 OD2 ASP A 163 83.447 60.539 19.212 1.00 77.97 ATOM 114 N TRP A 164 85.708 64.947 21.817 1.00 52.16 ATOM 115 CA TRP A 164 86.778 65.791 22.335 1.00 47.61 ATOM 116 C TRP A 164 86.527 66.153 23.792 1.00 56.80 ATOM 117 O TRP A 164 85.532 66.801 24.112 1.00 61.99 ATOM 118 CB TRP A 164 86.902 67.060 21.490 1.00 56.61 ATOM 119 CG TRP A 164 88.228 67.746 21.599 1.00 60.09 ATOM 120 CD1 TRP A 164 88.649 68.556 22.610 1.00 51.18 ATOM 121 CD2 TRP A 164 89.302 67.698 20.649 1.00 61.18 ATOM 122 NE1 TRP A 164 89.922 69.009 22.357 1.00 57.18 ATOM 123 CE2 TRP A 164 90.345 68.497 21.159 1.00 64.87 ATOM 124 CE3 TRP A 164 89.484 67.053 19.421 1.00 56.43 ATOM 125 CZ2 TRP A 164 91.552 68.669 20.484 1.00 54.68 ATOM 126 CZ3 TRP A 164 90.683 67.224 18.753 1.00 62.39 ATOM 127 CH2 TRP A 164 91.701 68.028 19.285 1.00 64.87 ATOM 128 N THR A 165 87.432 65.741 24.673 1.00 62.21 ATOM 129 CA THR A 165 87.231 65.924 26.106 1.00 45.38 ATOM 130 C THR A 165 88.214 66.914 26.717 1.00 41.66 ATOM 131 O THR A 165 88.011 67.386 27.835 1.00 50.88 ATOM 132 CB THR A 165 87.357 64.589 26.865 1.00 47.64 ATOM 133 OG1 THR A 165 88.692 64.086 26.727 1.00 65.53 ATOM 134 CG2 THR A 165 86.370 63.571 26.321 1.00 57.53 ATOM 135 N GLY A 166 89.280 67.223 25.988 1.00 47.50 ATOM 136 CA GLY A 166 90.314 68.102 26.504 1.00 56.49 ATOM 137 C GLY A 166 90.224 69.507 25.946 1.00 60.36 ATOM 138 O GLY A 166 89.256 69.854 25.270 1.00 53.43 ATOM 139 N ASP A 167 91.235 70.320 26.236 1.00 58.97 ATOM 140 CA ASP A 167 91.301 71.682 25.717 1.00 58.05 ATOM 141 C ASP A 167 91.420 71.699 24.198 1.00 58.53 ATOM 142 O ASP A 167 91.830 70.714 23.583 1.00 56.26 ATOM 143 CB ASP A 167 92.481 72.439 26.333 1.00 59.81 ATOM 144 CG ASP A 167 92.270 72.763 27.797 1.00 68.02 ATOM 145 OD1 ASP A 167 91.287 72.266 28.385 1.00 70.90 ATOM 146 OD2 ASP A 167 93.090 73.518 28.362 1.00 69.41 ATOM 147 N VAL A 168 91.050 72.824 23.598 1.00 47.44 ATOM 148 CA VAL A 168 91.285 73.047 22.179 1.00 59.57 ATOM 149 C VAL A 168 92.358 74.114 22.019 1.00 64.77 ATOM 150 O VAL A 168 92.153 75.267 22.393 1.00 59.81 ATOM 151 CB VAL A 168 90.007 73.484 21.440 1.00 47.67 ATOM 152 CG1 VAL A 168 90.322 73.812 19.987 1.00 48.46 ATOM 153 CG2 VAL A 168 88.941 72.401 21.534 1.00 61.04 ATOM 154 N THR A 169 93.506 73.724 21.474 1.00 78.59 ATOM 155 CA THR A 169 94.590 74.668 21.236 1.00 73.50 ATOM 156 C THR A 169 94.784 74.904 19.739 1.00 72.82 ATOM 157 O THR A 169 94.190 74.200 18.922 1.00 83.39 ATOM 158 CB THR A 169 95.907 74.147 21.851 1.00 73.22 ATOM 159 OG1 THR A 169 96.316 72.958 21.163 1.00 61.32 ATOM 160 CG2 THR A 169 95.722 73.837 23.328 1.00 70.09 ATOM 161 N PRO A 170 95.618 75.893 19.370 1.00 85.35 ATOM 162 CA PRO A 170 95.945 76.058 17.949 1.00 79.03 ATOM 163 C PRO A 170 96.719 74.867 17.387 1.00 73.68 ATOM 164 O PRO A 170 97.386 74.171 18.153 1.00 66.53 ATOM 165 CB PRO A 170 96.803 77.325 17.936 1.00 85.48 ATOM 166 CG PRO A 170 96.312 78.107 19.099 1.00 79.85 ATOM 167 CD PRO A 170 95.987 77.088 20.154 1.00 77.91 ATOM 168 N PRO A 182 90.997 75.341 11.602 1.00 62.74 ATOM 169 CA PRO A 182 90.566 75.862 12.904 1.00 75.34 ATOM 170 C PRO A 182 89.342 75.128 13.456 1.00 82.25 ATOM 171 O PRO A 182 88.258 75.201 12.875 1.00 78.75 ATOM 172 CB PRO A 182 90.241 77.327 12.603 1.00 56.13 ATOM 173 CG PRO A 182 89.865 77.336 11.163 1.00 76.25 ATOM 174 CD PRO A 182 90.709 76.281 10.505 1.00 65.45 ATOM 175 N LEU A 183 89.526 74.428 14.571 1.00 63.55 ATOM 176 CA LEU A 183 88.439 73.696 15.210 1.00 58.96 ATOM 177 C LEU A 183 87.560 74.634 16.028 1.00 54.60 ATOM 178 O LEU A 183 88.037 75.630 16.568 1.00 51.85 ATOM 179 CB LEU A 183 88.989 72.591 16.117 1.00 55.94 ATOM 180 CG LEU A 183 89.649 71.367 15.484 1.00 62.63 ATOM 181 CD1 LEU A 183 90.325 70.532 16.558 1.00 56.14 ATOM 182 CD2 LEU A 183 88.630 70.536 14.733 1.00 58.57 ATOM 183 N ARG A 184 86.275 74.309 16.120 1.00 49.78 ATOM 184 CA ARG A 184 85.358 75.072 16.959 1.00 39.94 ATOM 185 C ARG A 184 84.536 74.135 17.837 1.00 43.25 ATOM 186 O ARG A 184 84.400 72.951 17.524 1.00 44.35 ATOM 187 CB ARG A 184 84.435 75.940 16.100 1.00 40.49 ATOM 188 CG ARG A 184 83.571 75.155 15.126 1.00 49.27 ATOM 189 CD ARG A 184 82.420 76.005 14.615 1.00 49.10 ATOM 190 NE ARG A 184 81.311 76.069 15.565 1.00 44.12 ATOM 191 CZ ARG A 184 80.211 76.792 15.373 1.00 46.56 ATOM 192 NH1 ARG A 184 80.087 77.532 14.277 1.00 43.08 ATOM 193 NH2 ARG A 184 79.243 76.793 16.281 1.00 35.62 ATOM 194 N PRO A 185 83.997 74.657 18.950 1.00 39.39 ATOM 195 CA PRO A 185 83.063 73.865 19.756 1.00 38.79 ATOM 196 C PRO A 185 81.877 73.396 18.919 1.00 47.07 ATOM 197 O PRO A 185 81.391 74.148 18.075 1.00 38.84 ATOM 198 CB PRO A 185 82.618 74.849 20.843 1.00 39.11 ATOM 199 CG PRO A 185 83.749 75.807 20.959 1.00 39.61 ATOM 200 CD PRO A 185 84.305 75.955 19.577 1.00 38.44 ATOM 201 N HIS A 186 81.439 72.159 19.131 1.00 34.68 ATOM 202 CA HIS A 186 80.254 71.649 18.456 1.00 40.83 ATOM 203 C HIS A 186 79.030 72.146 19.203 1.00 41.23 ATOM 204 O HIS A 186 78.309 71.384 19.843 1.00 41.79 ATOM 205 CB HIS A 186 80.263 70.124 18.388 1.00 48.42 ATOM 206 CG HIS A 186 79.164 69.557 17.548 1.00 40.51 ATOM 207 ND1 HIS A 186 78.945 69.953 16.245 1.00 46.72 ATOM 208 CD2 HIS A 186 78.216 68.631 17.823 1.00 42.24 ATOM 209 CE1 HIS A 186 77.913 69.293 15.754 1.00 45.79 ATOM 210 NE2 HIS A 186 77.452 68.483 16.691 1.00 42.35 ATOM 211 N VAL A 187 78.812 73.447 19.107 1.00 37.04 ATOM 212 CA VAL A 187 77.816 74.137 19.905 1.00 34.30 ATOM 213 C VAL A 187 77.043 75.055 18.968 1.00 39.80 ATOM 214 O VAL A 187 77.646 75.725 18.138 1.00 45.92 ATOM 215 CB VAL A 187 78.496 74.924 21.044 1.00 37.47 ATOM 216 CG1 VAL A 187 77.798 76.231 21.315 1.00 54.76 ATOM 217 CG2 VAL A 187 78.615 74.066 22.302 1.00 41.51 ATOM 218 C3 KMQ A 101 71.964 78.554 23.236 0.31 47.40 ATOM 219 C21 KMQ A 101 73.125 77.657 23.456 0.31 52.17 ATOM 220 C1 KMQ A 101 73.663 76.823 22.579 0.31 35.84 ATOM 221 C7 KMQ A 101 74.840 75.995 23.004 0.31 49.26 ATOM 222 O2D KMQ A 101 71.544 79.376 24.350 0.31 48.11 ATOM 223 C2D KMQ A 101 71.523 78.738 25.623 0.31 48.23 ATOM 224 C3D KMQ A 101 70.489 77.631 25.705 0.31 44.26 ATOM 225 O3D KMQ A 101 70.643 76.565 24.757 0.31 51.06 ATOM 226 C1D KMQ A 101 70.844 79.775 26.482 0.31 33.14 ATOM 227 O1D KMQ A 101 71.338 81.076 26.158 0.31 42.69 ATOM 228 O4D KMQ A 101 69.459 79.678 26.122 0.31 33.70 ATOM 229 C4D KMQ A 101 69.212 78.416 25.488 0.31 36.51 ATOM 230 C5D KMQ A 101 68.005 77.744 26.118 0.31 33.90 ATOM 231 O5D KMQ A 101 67.760 78.405 27.350 0.31 33.29 ATOM 232 PB KMQ A 101 67.324 77.584 28.657 0.31 31.50 ATOM 233 O2B KMQ A 101 65.859 77.834 28.903 0.31 29.39 ATOM 234 O1B KMQ A 101 67.618 76.118 28.466 0.31 33.60 ATOM 235 O3A KMQ A 101 68.193 78.141 29.888 0.31 30.85 ATOM 236 PA KMQ A 101 67.788 79.483 30.675 0.31 33.82 ATOM 237 O1A KMQ A 101 68.972 79.911 31.504 0.31 38.32 ATOM 238 O2A KMQ A 101 67.369 80.556 29.697 0.31 36.00 ATOM 239 O5' KMQ A 101 66.555 79.142 31.639 0.31 35.70 ATOM 240 C5' KMQ A 101 66.722 78.129 32.627 0.31 31.81 ATOM 241 C4' KMQ A 101 65.392 77.897 33.322 0.31 32.02 ATOM 242 O4' KMQ A 101 65.546 76.846 34.277 0.31 32.32 ATOM 243 C1' KMQ A 101 64.944 77.225 35.510 0.31 31.80 ATOM 244 C2' KMQ A 101 64.985 78.739 35.545 0.31 30.68 ATOM 245 O2' KMQ A 101 63.838 79.230 36.242 0.31 33.86 ATOM 246 C3' KMQ A 101 64.943 79.134 34.082 0.31 28.46 ATOM 247 O3' KMQ A 101 63.602 79.438 33.699 0.31 35.98 ATOM 248 N9 KMQ A 101 65.701 76.635 36.637 0.31 30.79 ATOM 249 C8 KMQ A 101 66.815 77.122 37.218 0.31 33.90 ATOM 250 N7 KMQ A 101 67.234 76.303 38.220 0.31 35.03 ATOM 251 C5 KMQ A 101 66.376 75.266 38.276 0.31 32.33 ATOM 252 C4 KMQ A 101 65.373 75.489 37.228 0.31 32.37 ATOM 253 C6 KMQ A 101 66.224 74.041 39.094 0.31 35.83 ATOM 254 N6 KMQ A 101 67.100 73.747 40.084 0.31 38.31 ATOM 255 N1 KMQ A 101 65.181 73.227 38.816 0.31 36.07 ATOM 256 C2 KMQ A 101 64.298 73.501 37.837 0.31 33.60 ATOM 257 N3 KMQ A 101 64.375 74.591 37.057 0.31 31.97 TER