HEADER HYDROLASE 31-DEC-69 6SCX TITLE Crystal structure of the catalytic domain of human NUDT12 in complex TITLE 2 with 7-methyl-guanosine-5'-triphosphate COMPND MOL_ID: 1; COMPND 2 MOLECULE: Peroxisomal NADH pyrophosphatase NUDT12; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.6.1.22; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.92 ANGSTORMS DBREF 6SCX A 111 462 UNP Q9BQG2 NUD12_HUMAN 111 462 SEQRES 1 A 29 PHE CYS PRO THR CYS GLY ASN ALA THR LYS ILE GLU GLU SEQRES 2 A 29 GLY GLY TYR LYS ARG LEU CYS LEU LYS GLU ASP CYS PRO SEQRES 3 A 29 SER LEU ASN ATOM 1 N PHE A 283 -21.248 11.609 -27.783 1.00 88.64 ATOM 2 CA PHE A 283 -20.284 11.617 -26.688 1.00 88.29 ATOM 3 C PHE A 283 -20.585 12.687 -25.647 1.00 91.36 ATOM 4 O PHE A 283 -21.365 13.611 -25.898 1.00 91.71 ATOM 5 CB PHE A 283 -18.858 11.789 -27.236 1.00 89.98 ATOM 6 CG PHE A 283 -18.384 10.638 -28.088 1.00 91.77 ATOM 7 CD1 PHE A 283 -18.715 10.566 -29.437 1.00 95.10 ATOM 8 CD2 PHE A 283 -17.591 9.634 -27.549 1.00 94.46 ATOM 9 CE1 PHE A 283 -18.276 9.500 -30.226 1.00 95.52 ATOM 10 CE2 PHE A 283 -17.142 8.574 -28.341 1.00 97.22 ATOM 11 CZ PHE A 283 -17.488 8.514 -29.675 1.00 95.04 ATOM 12 N CYS A 284 -19.959 12.552 -24.470 1.00 85.87 ATOM 13 CA CYS A 284 -20.098 13.501 -23.376 1.00 86.57 ATOM 14 C CYS A 284 -19.122 14.662 -23.615 1.00 87.44 ATOM 15 O CYS A 284 -17.922 14.422 -23.731 1.00 86.78 ATOM 16 CB CYS A 284 -19.852 12.817 -22.033 1.00 87.08 ATOM 17 SG CYS A 284 -19.429 13.949 -20.684 1.00 90.75 ATOM 18 N PRO A 285 -19.597 15.922 -23.710 1.00 82.46 ATOM 19 CA PRO A 285 -18.660 17.036 -23.939 1.00 81.33 ATOM 20 C PRO A 285 -17.801 17.386 -22.724 1.00 84.81 ATOM 21 O PRO A 285 -16.770 18.035 -22.887 1.00 83.87 ATOM 22 CB PRO A 285 -19.571 18.202 -24.333 1.00 82.65 ATOM 23 CG PRO A 285 -20.954 17.643 -24.434 1.00 87.53 ATOM 24 CD PRO A 285 -20.986 16.405 -23.616 1.00 83.19 ATOM 25 N THR A 286 -18.219 16.965 -21.516 1.00 82.79 ATOM 26 CA THR A 286 -17.487 17.236 -20.279 1.00 83.76 ATOM 27 C THR A 286 -16.194 16.425 -20.186 1.00 91.10 ATOM 28 O THR A 286 -15.147 16.997 -19.878 1.00 92.46 ATOM 29 CB THR A 286 -18.402 17.048 -19.052 1.00 88.55 ATOM 30 OG1 THR A 286 -19.548 17.888 -19.185 1.00 83.37 ATOM 31 CG2 THR A 286 -17.701 17.358 -17.736 1.00 86.55 ATOM 32 N CYS A 287 -16.267 15.105 -20.438 1.00 87.99 ATOM 33 CA CYS A 287 -15.117 14.211 -20.304 1.00 88.23 ATOM 34 C CYS A 287 -14.699 13.508 -21.601 1.00 95.21 ATOM 35 O CYS A 287 -13.581 12.999 -21.673 1.00 95.86 ATOM 36 CB CYS A 287 -15.355 13.205 -19.184 1.00 87.21 ATOM 37 SG CYS A 287 -16.405 11.806 -19.655 1.00 90.29 ATOM 38 N GLY A 288 -15.592 13.445 -22.581 1.00 93.83 ATOM 39 CA GLY A 288 -15.298 12.814 -23.862 1.00 94.15 ATOM 40 C GLY A 288 -15.782 11.388 -24.023 1.00 98.95 ATOM 41 O GLY A 288 -15.822 10.890 -25.150 1.00 99.09 ATOM 42 N ASN A 289 -16.137 10.711 -22.910 1.00 95.49 ATOM 43 CA ASN A 289 -16.616 9.324 -22.945 1.00 96.22 ATOM 44 C ASN A 289 -17.993 9.191 -23.586 1.00101.00 ATOM 45 O ASN A 289 -18.751 10.162 -23.630 1.00 98.89 ATOM 46 CB ASN A 289 -16.592 8.685 -21.559 1.00100.29 ATOM 47 CG ASN A 289 -15.202 8.331 -21.108 1.00131.45 ATOM 48 OD1 ASN A 289 -14.704 7.227 -21.356 1.00124.24 ATOM 49 ND2 ASN A 289 -14.540 9.261 -20.436 1.00123.43 ATOM 50 N ALA A 290 -18.303 7.986 -24.099 1.00 99.77 ATOM 51 CA ALA A 290 -19.573 7.670 -24.752 1.00100.17 ATOM 52 C ALA A 290 -20.767 7.824 -23.808 1.00104.07 ATOM 53 O ALA A 290 -20.610 7.809 -22.581 1.00104.95 ATOM 54 CB ALA A 290 -19.531 6.267 -25.334 1.00101.06 ATOM 55 N THR A 291 -21.955 8.021 -24.394 1.00 98.63 ATOM 56 CA THR A 291 -23.193 8.232 -23.649 1.00 97.13 ATOM 57 C THR A 291 -24.294 7.237 -23.994 1.00 97.83 ATOM 58 O THR A 291 -24.399 6.782 -25.136 1.00 97.25 ATOM 59 CB THR A 291 -23.685 9.675 -23.811 1.00109.18 ATOM 60 OG1 THR A 291 -23.627 10.033 -25.191 1.00108.10 ATOM 61 CG2 THR A 291 -22.878 10.666 -22.989 1.00107.66 ATOM 62 N LYS A 292 -25.132 6.935 -22.994 1.00 92.50 ATOM 63 CA LYS A 292 -26.273 6.030 -23.084 1.00 91.83 ATOM 64 C LYS A 292 -27.552 6.841 -23.302 1.00 92.24 ATOM 65 O LYS A 292 -27.738 7.880 -22.668 1.00 92.13 ATOM 66 CB LYS A 292 -26.374 5.203 -21.786 1.00 96.16 ATOM 67 CG LYS A 292 -27.523 4.199 -21.742 1.00122.47 ATOM 68 CD LYS A 292 -27.778 3.716 -20.324 1.00136.64 ATOM 69 CE LYS A 292 -28.963 2.785 -20.243 1.00142.08 ATOM 70 NZ LYS A 292 -29.186 2.303 -18.855 1.00148.71 ATOM 71 N ILE A 293 -28.434 6.350 -24.182 1.00 87.09 ATOM 72 CA ILE A 293 -29.719 6.988 -24.472 1.00 86.80 ATOM 73 C ILE A 293 -30.725 6.529 -23.422 1.00 88.80 ATOM 74 O ILE A 293 -30.805 5.333 -23.125 1.00 87.83 ATOM 75 CB ILE A 293 -30.209 6.675 -25.912 1.00 90.90 ATOM 76 CG1 ILE A 293 -29.154 7.053 -26.968 1.00 94.08 ATOM 77 CG2 ILE A 293 -31.544 7.359 -26.215 1.00 89.10 ATOM 78 CD1 ILE A 293 -28.404 5.873 -27.562 1.00113.38 ATOM 79 N GLU A 294 -31.491 7.473 -22.864 1.00 86.50 ATOM 80 CA GLU A 294 -32.489 7.163 -21.848 1.00 86.93 ATOM 81 C GLU A 294 -33.685 8.095 -21.906 1.00 92.17 ATOM 82 O GLU A 294 -33.707 9.023 -22.718 1.00 91.90 ATOM 83 CB GLU A 294 -31.856 7.194 -20.454 1.00 88.62 ATOM 84 CG GLU A 294 -31.635 5.813 -19.868 1.00107.12 ATOM 85 CD GLU A 294 -31.224 5.824 -18.411 1.00157.75 ATOM 86 OE1 GLU A 294 -31.936 6.453 -17.594 1.00149.09 ATOM 87 OE2 GLU A 294 -30.185 5.206 -18.084 1.00171.47 ATOM 88 N GLU A 295 -34.686 7.831 -21.039 1.00 89.75 ATOM 89 CA GLU A 295 -35.924 8.602 -20.892 1.00 89.07 ATOM 90 C GLU A 295 -36.691 8.733 -22.215 1.00 89.81 ATOM 91 O GLU A 295 -37.171 9.817 -22.560 1.00 88.97 ATOM 92 CB GLU A 295 -35.635 9.976 -20.259 1.00 90.77 ATOM 93 CG GLU A 295 -35.101 9.890 -18.841 1.00104.70 ATOM 94 CD GLU A 295 -35.940 10.602 -17.798 1.00139.29 ATOM 95 OE1 GLU A 295 -35.362 11.033 -16.775 1.00151.42 ATOM 96 OE2 GLU A 295 -37.171 10.730 -17.996 1.00134.16 ATOM 97 N GLY A 296 -36.756 7.628 -22.956 1.00 85.36 ATOM 98 CA GLY A 296 -37.425 7.551 -24.250 1.00 84.74 ATOM 99 C GLY A 296 -36.770 8.331 -25.375 1.00 86.95 ATOM 100 O GLY A 296 -37.404 8.560 -26.407 1.00 87.06 ATOM 101 N GLY A 297 -35.513 8.729 -25.182 1.00 81.95 ATOM 102 CA GLY A 297 -34.740 9.470 -26.173 1.00 80.74 ATOM 103 C GLY A 297 -34.697 10.972 -25.974 1.00 81.78 ATOM 104 O GLY A 297 -34.456 11.709 -26.932 1.00 81.06 ATOM 105 N TYR A 298 -34.921 11.436 -24.732 1.00 76.70 ATOM 106 CA TYR A 298 -34.888 12.860 -24.381 1.00 76.03 ATOM 107 C TYR A 298 -33.842 13.139 -23.302 1.00 79.15 ATOM 108 O TYR A 298 -33.894 14.168 -22.622 1.00 79.18 ATOM 109 CB TYR A 298 -36.282 13.364 -23.969 1.00 76.53 ATOM 110 CG TYR A 298 -37.266 13.389 -25.116 1.00 78.66 ATOM 111 CD1 TYR A 298 -37.976 12.248 -25.475 1.00 81.57 ATOM 112 CD2 TYR A 298 -37.482 14.551 -25.850 1.00 78.96 ATOM 113 CE1 TYR A 298 -38.869 12.258 -26.541 1.00 83.50 ATOM 114 CE2 TYR A 298 -38.382 14.576 -26.914 1.00 79.83 ATOM 115 CZ TYR A 298 -39.074 13.426 -27.256 1.00 89.52 ATOM 116 OH TYR A 298 -39.964 13.438 -28.303 1.00 89.18 ATOM 117 N LYS A 299 -32.879 12.217 -23.164 1.00 75.20 ATOM 118 CA LYS A 299 -31.790 12.305 -22.201 1.00 74.24 ATOM 119 C LYS A 299 -30.626 11.437 -22.658 1.00 78.00 ATOM 120 O LYS A 299 -30.818 10.473 -23.407 1.00 76.84 ATOM 121 CB LYS A 299 -32.267 11.882 -20.801 1.00 76.73 ATOM 122 CG LYS A 299 -31.581 12.630 -19.669 1.00 93.65 ATOM 123 CD LYS A 299 -32.218 12.296 -18.333 1.00101.03 ATOM 124 CE LYS A 299 -31.511 12.951 -17.175 1.00105.83 ATOM 125 NZ LYS A 299 -32.212 12.684 -15.891 1.00114.48 ATOM 126 N ARG A 300 -29.416 11.805 -22.228 1.00 75.79 ATOM 127 CA ARG A 300 -28.185 11.084 -22.518 1.00 75.52 ATOM 128 C ARG A 300 -27.307 11.098 -21.283 1.00 85.32 ATOM 129 O ARG A 300 -27.008 12.168 -20.745 1.00 83.45 ATOM 130 CB ARG A 300 -27.456 11.662 -23.734 1.00 69.67 ATOM 131 CG ARG A 300 -27.806 10.946 -25.026 1.00 62.61 ATOM 132 CD ARG A 300 -26.838 11.311 -26.132 1.00 63.88 ATOM 133 NE ARG A 300 -27.057 10.529 -27.352 1.00 87.53 ATOM 134 CZ ARG A 300 -26.447 9.379 -27.628 1.00123.71 ATOM 135 NH1 ARG A 300 -25.587 8.849 -26.770 1.00123.08 ATOM 136 NH2 ARG A 300 -26.706 8.744 -28.765 1.00121.32 ATOM 137 N LEU A 301 -26.933 9.905 -20.808 1.00 88.67 ATOM 138 CA LEU A 301 -26.118 9.754 -19.609 1.00 91.91 ATOM 139 C LEU A 301 -24.707 9.305 -19.909 1.00102.25 ATOM 140 O LEU A 301 -24.508 8.383 -20.699 1.00103.51 ATOM 141 CB LEU A 301 -26.778 8.780 -18.622 1.00 92.43 ATOM 142 CG LEU A 301 -28.024 9.291 -17.897 1.00 97.76 ATOM 143 CD1 LEU A 301 -28.794 8.154 -17.292 1.00 97.93 ATOM 144 CD2 LEU A 301 -27.669 10.301 -16.811 1.00100.96 ATOM 145 N CYS A 302 -23.724 9.940 -19.248 1.00102.04 ATOM 146 CA CYS A 302 -22.315 9.587 -19.394 1.00103.15 ATOM 147 C CYS A 302 -22.041 8.305 -18.633 1.00109.20 ATOM 148 O CYS A 302 -22.545 8.127 -17.521 1.00108.66 ATOM 149 CB CYS A 302 -21.405 10.716 -18.928 1.00103.47 ATOM 150 SG CYS A 302 -19.642 10.369 -19.151 1.00107.27 ATOM 151 N LEU A 303 -21.249 7.414 -19.236 1.00107.86 ATOM 152 CA LEU A 303 -20.930 6.111 -18.654 1.00108.52 ATOM 153 C LEU A 303 -19.711 6.130 -17.719 1.00110.28 ATOM 154 O LEU A 303 -19.510 5.168 -16.971 1.00106.82 ATOM 155 CB LEU A 303 -20.789 5.052 -19.756 1.00109.49 ATOM 156 CG LEU A 303 -22.078 4.765 -20.525 1.00116.34 ATOM 157 CD1 LEU A 303 -21.825 4.679 -22.005 1.00117.27 ATOM 158 CD2 LEU A 303 -22.776 3.526 -19.998 1.00122.06 ATOM 159 N LYS A 304 -18.925 7.229 -17.731 1.00107.71 ATOM 160 CA LYS A 304 -17.768 7.385 -16.848 1.00107.36 ATOM 161 C LYS A 304 -18.313 7.774 -15.484 1.00108.23 ATOM 162 O LYS A 304 -18.918 8.835 -15.352 1.00106.21 ATOM 163 CB LYS A 304 -16.791 8.443 -17.387 1.00109.43 ATOM 164 N GLU A 305 -18.173 6.877 -14.496 1.00106.21 ATOM 165 CA GLU A 305 -18.696 7.051 -13.134 1.00107.02 ATOM 166 C GLU A 305 -18.335 8.377 -12.465 1.00118.81 ATOM 167 O GLU A 305 -19.222 9.073 -11.970 1.00119.51 ATOM 168 CB GLU A 305 -18.275 5.885 -12.237 1.00107.52 ATOM 169 CG GLU A 305 -18.855 4.549 -12.656 1.00113.77 ATOM 170 CD GLU A 305 -18.100 3.346 -12.126 1.00140.31 ATOM 171 OE1 GLU A 305 -17.533 3.433 -11.012 1.00146.92 ATOM 172 OE2 GLU A 305 -18.081 2.310 -12.828 1.00139.28 ATOM 173 N ASP A 306 -17.046 8.743 -12.484 1.00120.16 ATOM 174 CA ASP A 306 -16.537 9.956 -11.843 1.00123.22 ATOM 175 C ASP A 306 -16.832 11.256 -12.587 1.00127.35 ATOM 176 O ASP A 306 -16.449 12.322 -12.095 1.00127.82 ATOM 177 CB ASP A 306 -15.032 9.817 -11.585 1.00126.82 ATOM 178 CG ASP A 306 -14.688 8.664 -10.667 1.00154.86 ATOM 179 OD1 ASP A 306 -14.995 7.505 -11.027 1.00159.19 ATOM 180 OD2 ASP A 306 -14.103 8.918 -9.595 1.00167.74 ATOM 181 N CYS A 307 -17.514 11.184 -13.750 1.00122.63 ATOM 182 CA CYS A 307 -17.852 12.360 -14.556 1.00121.57 ATOM 183 C CYS A 307 -18.689 13.382 -13.771 1.00119.45 ATOM 184 O CYS A 307 -19.643 12.988 -13.091 1.00120.42 ATOM 185 CB CYS A 307 -18.538 11.959 -15.858 1.00122.15 ATOM 186 SG CYS A 307 -18.922 13.346 -16.960 1.00125.99 ATOM 187 N PRO A 308 -18.348 14.694 -13.854 1.00108.79 ATOM 188 CA PRO A 308 -19.131 15.708 -13.130 1.00105.94 ATOM 189 C PRO A 308 -20.545 15.934 -13.675 1.00100.60 ATOM 190 O PRO A 308 -21.349 16.553 -12.975 1.00 97.27 ATOM 191 CB PRO A 308 -18.279 16.980 -13.255 1.00108.44 ATOM 192 CG PRO A 308 -16.955 16.535 -13.773 1.00113.60 ATOM 193 CD PRO A 308 -17.236 15.325 -14.589 1.00110.23 ATOM 194 N SER A 309 -20.858 15.446 -14.903 1.00 93.87 ATOM 195 CA SER A 309 -22.195 15.602 -15.492 1.00 93.20 ATOM 196 C SER A 309 -23.241 14.786 -14.729 1.00 95.36 ATOM 197 O SER A 309 -24.407 15.179 -14.678 1.00 96.68 ATOM 198 CB SER A 309 -22.195 15.219 -16.968 1.00 94.75 ATOM 199 OG SER A 309 -22.003 13.825 -17.142 1.00101.12 ATOM 200 N LEU A 310 -22.810 13.670 -14.111 1.00 90.00 ATOM 201 CA LEU A 310 -23.675 12.790 -13.325 1.00 88.39 ATOM 202 C LEU A 310 -23.933 13.346 -11.925 1.00 89.50 ATOM 203 O LEU A 310 -24.803 12.837 -11.212 1.00 88.55 ATOM 204 CB LEU A 310 -23.093 11.369 -13.254 1.00 88.13 ATOM 205 CG LEU A 310 -22.872 10.661 -14.591 1.00 92.55 ATOM 206 CD1 LEU A 310 -21.909 9.536 -14.434 1.00 92.80 ATOM 207 CD2 LEU A 310 -24.180 10.162 -15.193 1.00 95.06 ATOM 208 N ASN A 311 -23.176 14.388 -11.535 1.00 84.91 ATOM 209 CA ASN A 311 -23.331 15.042 -10.244 1.00 84.42 ATOM 210 C ASN A 311 -24.126 16.323 -10.434 1.00 85.78 ATOM 211 O ASN A 311 -23.556 17.390 -10.683 1.00 86.36 ATOM 212 CB ASN A 311 -21.977 15.313 -9.585 1.00 88.12 ATOM 213 CG ASN A 311 -22.095 15.791 -8.157 1.00121.30 ATOM 214 OD1 ASN A 311 -23.077 15.518 -7.449 1.00122.07 ATOM 215 ND2 ASN A 311 -21.087 16.509 -7.693 1.00110.39 ATOM 216 CD CD A 501 -18.542 12.551 -19.054 1.00132.41 TER