HEADER HYDROLASE 31-DEC-69 6SCX TITLE Crystal structure of the catalytic domain of human NUDT12 in complex TITLE 2 with 7-methyl-guanosine-5'-triphosphate COMPND MOL_ID: 1; COMPND 2 MOLECULE: Peroxisomal NADH pyrophosphatase NUDT12; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.6.1.22; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.92 ANGSTORMS DBREF 6SCX B 111 462 UNP Q9BQG2 NUD12_HUMAN 111 462 SEQRES 1 B 29 PHE CYS PRO THR CYS GLY ASN ALA THR LYS ILE GLU GLU SEQRES 2 B 29 GLY GLY TYR LYS ARG LEU CYS LEU LYS GLU ASP CYS PRO SEQRES 3 B 29 SER LEU ASN ATOM 1 N PHE B 283 -14.749 18.872 -24.609 1.00 82.27 ATOM 2 CA PHE B 283 -14.630 17.865 -25.655 1.00 81.73 ATOM 3 C PHE B 283 -15.681 18.032 -26.739 1.00 88.39 ATOM 4 O PHE B 283 -16.681 18.726 -26.542 1.00 89.22 ATOM 5 CB PHE B 283 -14.699 16.458 -25.039 1.00 82.84 ATOM 6 CG PHE B 283 -13.543 16.142 -24.121 1.00 83.98 ATOM 7 CD1 PHE B 283 -13.556 16.551 -22.792 1.00 84.36 ATOM 8 CD2 PHE B 283 -12.440 15.436 -24.585 1.00 86.06 ATOM 9 CE1 PHE B 283 -12.482 16.268 -21.946 1.00 84.98 ATOM 10 CE2 PHE B 283 -11.372 15.138 -23.733 1.00 88.48 ATOM 11 CZ PHE B 283 -11.401 15.554 -22.418 1.00 85.22 ATOM 12 N CYS B 284 -15.440 17.400 -27.893 1.00 86.03 ATOM 13 CA CYS B 284 -16.357 17.420 -29.023 1.00 87.14 ATOM 14 C CYS B 284 -17.428 16.344 -28.809 1.00 94.10 ATOM 15 O CYS B 284 -17.080 15.175 -28.653 1.00 93.76 ATOM 16 CB CYS B 284 -15.604 17.211 -30.332 1.00 87.49 ATOM 17 SG CYS B 284 -16.641 16.649 -31.704 1.00 91.46 ATOM 18 N PRO B 285 -18.730 16.697 -28.803 1.00 92.64 ATOM 19 CA PRO B 285 -19.762 15.667 -28.589 1.00 92.64 ATOM 20 C PRO B 285 -19.971 14.731 -29.778 1.00 96.79 ATOM 21 O PRO B 285 -20.529 13.646 -29.602 1.00 92.95 ATOM 22 CB PRO B 285 -21.026 16.475 -28.287 1.00 94.48 ATOM 23 CG PRO B 285 -20.602 17.903 -28.204 1.00 99.65 ATOM 24 CD PRO B 285 -19.336 18.030 -28.966 1.00 94.50 ATOM 25 N THR B 286 -19.524 15.142 -30.979 1.00 98.97 ATOM 26 CA THR B 286 -19.665 14.345 -32.195 1.00101.76 ATOM 27 C THR B 286 -18.728 13.132 -32.201 1.00111.86 ATOM 28 O THR B 286 -19.185 12.024 -32.483 1.00112.89 ATOM 29 CB THR B 286 -19.516 15.230 -33.448 1.00106.30 ATOM 30 OG1 THR B 286 -20.472 16.290 -33.392 1.00104.17 ATOM 31 CG2 THR B 286 -19.700 14.454 -34.743 1.00106.92 ATOM 32 N CYS B 287 -17.431 13.336 -31.899 1.00110.95 ATOM 33 CA CYS B 287 -16.441 12.261 -31.947 1.00110.40 ATOM 34 C CYS B 287 -15.747 11.963 -30.606 1.00111.09 ATOM 35 O CYS B 287 -15.130 10.905 -30.478 1.00109.06 ATOM 36 CB CYS B 287 -15.425 12.520 -33.055 1.00111.24 ATOM 37 SG CYS B 287 -14.144 13.728 -32.626 1.00115.38 ATOM 38 N GLY B 288 -15.831 12.880 -29.643 1.00107.68 ATOM 39 CA GLY B 288 -15.232 12.690 -28.325 1.00107.93 ATOM 40 C GLY B 288 -13.868 13.312 -28.103 1.00111.80 ATOM 41 O GLY B 288 -13.430 13.417 -26.954 1.00113.43 ATOM 42 N ASN B 289 -13.173 13.715 -29.187 1.00105.53 ATOM 43 CA ASN B 289 -11.841 14.323 -29.102 1.00103.55 ATOM 44 C ASN B 289 -11.868 15.726 -28.508 1.00105.53 ATOM 45 O ASN B 289 -12.910 16.383 -28.523 1.00103.82 ATOM 46 CB ASN B 289 -11.145 14.316 -30.460 1.00 98.20 ATOM 47 CG ASN B 289 -10.655 12.949 -30.848 1.00108.23 ATOM 48 OD1 ASN B 289 -9.517 12.567 -30.560 1.00 98.60 ATOM 49 ND2 ASN B 289 -11.507 12.177 -31.504 1.00 94.34 ATOM 50 N ALA B 290 -10.716 16.176 -27.972 1.00102.61 ATOM 51 CA ALA B 290 -10.555 17.496 -27.363 1.00101.82 ATOM 52 C ALA B 290 -10.787 18.622 -28.371 1.00103.56 ATOM 53 O ALA B 290 -10.701 18.410 -29.587 1.00103.93 ATOM 54 CB ALA B 290 -9.180 17.623 -26.730 1.00102.58 ATOM 55 N THR B 291 -11.129 19.808 -27.857 1.00 97.50 ATOM 56 CA THR B 291 -11.433 20.978 -28.675 1.00 95.79 ATOM 57 C THR B 291 -10.566 22.186 -28.346 1.00 97.00 ATOM 58 O THR B 291 -10.169 22.376 -27.195 1.00 96.47 ATOM 59 CB THR B 291 -12.924 21.328 -28.589 1.00105.68 ATOM 60 OG1 THR B 291 -13.337 21.295 -27.221 1.00106.93 ATOM 61 CG2 THR B 291 -13.794 20.401 -29.421 1.00102.66 ATOM 62 N LYS B 292 -10.309 23.014 -29.368 1.00 92.87 ATOM 63 CA LYS B 292 -9.521 24.240 -29.297 1.00 92.47 ATOM 64 C LYS B 292 -10.455 25.442 -29.149 1.00 92.58 ATOM 65 O LYS B 292 -11.483 25.509 -29.823 1.00 89.61 ATOM 66 CB LYS B 292 -8.670 24.374 -30.575 1.00 96.41 ATOM 67 CG LYS B 292 -7.767 25.600 -30.633 1.00105.77 ATOM 68 CD LYS B 292 -7.271 25.845 -32.046 1.00119.99 ATOM 69 CE LYS B 292 -6.441 27.101 -32.154 1.00140.06 ATOM 70 NZ LYS B 292 -5.948 27.316 -33.541 1.00154.33 ATOM 71 N ILE B 293 -10.082 26.396 -28.283 1.00 90.15 ATOM 72 CA ILE B 293 -10.841 27.626 -28.057 1.00 90.19 ATOM 73 C ILE B 293 -10.449 28.632 -29.130 1.00 92.14 ATOM 74 O ILE B 293 -9.258 28.813 -29.402 1.00 90.15 ATOM 75 CB ILE B 293 -10.606 28.195 -26.632 1.00 94.01 ATOM 76 CG1 ILE B 293 -10.930 27.156 -25.547 1.00 96.13 ATOM 77 CG2 ILE B 293 -11.397 29.486 -26.397 1.00 93.40 ATOM 78 CD1 ILE B 293 -9.712 26.525 -24.901 1.00113.33 ATOM 79 N GLU B 294 -11.444 29.295 -29.729 1.00 89.86 ATOM 80 CA GLU B 294 -11.193 30.284 -30.766 1.00 89.92 ATOM 81 C GLU B 294 -12.222 31.399 -30.776 1.00 92.49 ATOM 82 O GLU B 294 -13.184 31.364 -30.002 1.00 92.52 ATOM 83 CB GLU B 294 -11.121 29.608 -32.138 1.00 91.67 ATOM 84 CG GLU B 294 -9.705 29.485 -32.665 1.00106.30 ATOM 85 CD GLU B 294 -9.627 29.013 -34.102 1.00161.13 ATOM 86 OE1 GLU B 294 -10.289 29.627 -34.970 1.00180.13 ATOM 87 OE2 GLU B 294 -8.905 28.023 -34.362 1.00174.23 ATOM 88 N GLU B 295 -12.001 32.398 -31.659 1.00 88.85 ATOM 89 CA GLU B 295 -12.866 33.562 -31.877 1.00 88.14 ATOM 90 C GLU B 295 -13.131 34.345 -30.583 1.00 89.36 ATOM 91 O GLU B 295 -14.271 34.723 -30.300 1.00 89.51 ATOM 92 CB GLU B 295 -14.176 33.137 -32.569 1.00 89.95 ATOM 93 CG GLU B 295 -13.972 32.571 -33.962 1.00108.81 ATOM 94 CD GLU B 295 -14.687 33.324 -35.067 1.00146.72 ATOM 95 OE1 GLU B 295 -15.004 32.689 -36.098 1.00157.87 ATOM 96 OE2 GLU B 295 -14.934 34.542 -34.907 1.00147.22 ATOM 97 N GLY B 296 -12.072 34.542 -29.799 1.00 83.59 ATOM 98 CA GLY B 296 -12.124 35.253 -28.526 1.00 82.18 ATOM 99 C GLY B 296 -12.887 34.553 -27.415 1.00 81.74 ATOM 100 O GLY B 296 -13.236 35.188 -26.417 1.00 81.40 ATOM 101 N GLY B 297 -13.132 33.252 -27.583 1.00 75.53 ATOM 102 CA GLY B 297 -13.837 32.427 -26.606 1.00 73.68 ATOM 103 C GLY B 297 -15.314 32.233 -26.878 1.00 73.75 ATOM 104 O GLY B 297 -16.074 31.942 -25.954 1.00 73.62 ATOM 105 N TYR B 298 -15.736 32.379 -28.143 1.00 67.99 ATOM 106 CA TYR B 298 -17.136 32.201 -28.538 1.00 67.14 ATOM 107 C TYR B 298 -17.285 31.101 -29.580 1.00 66.57 ATOM 108 O TYR B 298 -18.302 31.029 -30.277 1.00 65.02 ATOM 109 CB TYR B 298 -17.741 33.526 -29.029 1.00 69.36 ATOM 110 CG TYR B 298 -17.891 34.549 -27.929 1.00 74.46 ATOM 111 CD1 TYR B 298 -16.831 35.376 -27.572 1.00 78.25 ATOM 112 CD2 TYR B 298 -19.089 34.684 -27.234 1.00 76.01 ATOM 113 CE1 TYR B 298 -16.956 36.309 -26.548 1.00 83.20 ATOM 114 CE2 TYR B 298 -19.229 35.620 -26.211 1.00 77.56 ATOM 115 CZ TYR B 298 -18.159 36.433 -25.873 1.00 92.05 ATOM 116 OH TYR B 298 -18.287 37.363 -24.872 1.00 97.78 ATOM 117 N LYS B 299 -16.265 30.240 -29.678 1.00 62.52 ATOM 118 CA LYS B 299 -16.224 29.121 -30.608 1.00 62.42 ATOM 119 C LYS B 299 -15.261 28.064 -30.090 1.00 68.18 ATOM 120 O LYS B 299 -14.333 28.376 -29.335 1.00 68.37 ATOM 121 CB LYS B 299 -15.808 29.591 -32.012 1.00 63.76 ATOM 122 CG LYS B 299 -16.446 28.800 -33.144 1.00 63.64 ATOM 123 CD LYS B 299 -16.121 29.437 -34.486 1.00 71.49 ATOM 124 CE LYS B 299 -16.644 28.647 -35.658 1.00 92.30 ATOM 125 NZ LYS B 299 -16.398 29.354 -36.942 1.00118.69 ATOM 126 N ARG B 300 -15.509 26.809 -30.476 1.00 66.65 ATOM 127 CA ARG B 300 -14.687 25.666 -30.111 1.00 68.34 ATOM 128 C ARG B 300 -14.585 24.740 -31.300 1.00 80.59 ATOM 129 O ARG B 300 -15.605 24.328 -31.857 1.00 81.25 ATOM 130 CB ARG B 300 -15.233 24.944 -28.876 1.00 63.39 ATOM 131 CG ARG B 300 -14.611 25.428 -27.575 1.00 65.00 ATOM 132 CD ARG B 300 -14.927 24.472 -26.447 1.00 61.02 ATOM 133 NE ARG B 300 -14.203 24.803 -25.217 1.00 77.34 ATOM 134 CZ ARG B 300 -13.019 24.299 -24.884 1.00109.42 ATOM 135 NH1 ARG B 300 -12.395 23.451 -25.690 1.00 96.88 ATOM 136 NH2 ARG B 300 -12.442 24.653 -23.742 1.00116.19 ATOM 137 N LEU B 301 -13.351 24.452 -31.720 1.00 83.08 ATOM 138 CA LEU B 301 -13.091 23.609 -32.878 1.00 85.31 ATOM 139 C LEU B 301 -12.524 22.258 -32.504 1.00 92.92 ATOM 140 O LEU B 301 -11.622 22.177 -31.671 1.00 92.59 ATOM 141 CB LEU B 301 -12.147 24.321 -33.857 1.00 85.98 ATOM 142 CG LEU B 301 -12.745 25.487 -34.640 1.00 92.39 ATOM 143 CD1 LEU B 301 -11.664 26.351 -35.218 1.00 94.45 ATOM 144 CD2 LEU B 301 -13.659 25.001 -35.757 1.00 94.39 ATOM 145 N CYS B 302 -13.034 21.196 -33.149 1.00 93.52 ATOM 146 CA CYS B 302 -12.556 19.835 -32.931 1.00 95.01 ATOM 147 C CYS B 302 -11.223 19.651 -33.631 1.00102.46 ATOM 148 O CYS B 302 -11.050 20.120 -34.758 1.00102.61 ATOM 149 CB CYS B 302 -13.578 18.805 -33.398 1.00 96.01 ATOM 150 SG CYS B 302 -13.088 17.090 -33.081 1.00100.32 ATOM 151 N LEU B 303 -10.281 18.974 -32.957 1.00101.40 ATOM 152 CA LEU B 303 -8.930 18.749 -33.474 1.00102.79 ATOM 153 C LEU B 303 -8.792 17.486 -34.350 1.00107.33 ATOM 154 O LEU B 303 -7.775 17.334 -35.037 1.00104.68 ATOM 155 CB LEU B 303 -7.912 18.759 -32.327 1.00103.57 ATOM 156 CG LEU B 303 -7.764 20.107 -31.627 1.00109.96 ATOM 157 CD1 LEU B 303 -7.715 19.942 -30.132 1.00109.72 ATOM 158 CD2 LEU B 303 -6.564 20.878 -32.149 1.00117.79 ATOM 159 N LYS B 304 -9.820 16.609 -34.358 1.00107.70 ATOM 160 CA LYS B 304 -9.823 15.403 -35.188 1.00108.70 ATOM 161 C LYS B 304 -10.175 15.844 -36.598 1.00114.92 ATOM 162 O LYS B 304 -11.274 16.346 -36.819 1.00113.24 ATOM 163 CB LYS B 304 -10.823 14.362 -34.659 1.00111.47 ATOM 164 N GLU B 305 -9.217 15.733 -37.529 1.00115.53 ATOM 165 CA GLU B 305 -9.366 16.171 -38.921 1.00117.22 ATOM 166 C GLU B 305 -10.624 15.664 -39.624 1.00125.83 ATOM 167 O GLU B 305 -11.373 16.468 -40.178 1.00126.98 ATOM 168 CB GLU B 305 -8.126 15.810 -39.742 1.00118.98 ATOM 169 CG GLU B 305 -6.867 16.538 -39.311 1.00139.63 ATOM 170 CD GLU B 305 -5.575 15.887 -39.765 1.00174.30 ATOM 171 OE1 GLU B 305 -5.562 15.263 -40.852 1.00163.92 ATOM 172 OE2 GLU B 305 -4.568 16.005 -39.031 1.00169.41 ATOM 173 N ASP B 306 -10.878 14.347 -39.569 1.00124.25 ATOM 174 CA ASP B 306 -12.013 13.707 -40.239 1.00124.84 ATOM 175 C ASP B 306 -13.370 13.923 -39.575 1.00125.64 ATOM 176 O ASP B 306 -14.375 13.429 -40.094 1.00126.67 ATOM 177 CB ASP B 306 -11.740 12.208 -40.409 1.00128.30 ATOM 178 CG ASP B 306 -10.516 11.914 -41.245 1.00153.54 ATOM 179 OD1 ASP B 306 -9.405 12.330 -40.841 1.00157.34 ATOM 180 OD2 ASP B 306 -10.662 11.259 -42.295 1.00166.06 ATOM 181 N CYS B 307 -13.410 14.657 -38.445 1.00117.12 ATOM 182 CA CYS B 307 -14.644 14.930 -37.705 1.00113.39 ATOM 183 C CYS B 307 -15.702 15.644 -38.560 1.00109.44 ATOM 184 O CYS B 307 -15.371 16.622 -39.240 1.00106.92 ATOM 185 CB CYS B 307 -14.356 15.699 -36.420 1.00114.00 ATOM 186 SG CYS B 307 -15.817 16.013 -35.395 1.00118.18 ATOM 187 N PRO B 308 -16.979 15.177 -38.527 1.00102.41 ATOM 188 CA PRO B 308 -18.031 15.846 -39.312 1.00100.65 ATOM 189 C PRO B 308 -18.414 17.241 -38.810 1.00 99.55 ATOM 190 O PRO B 308 -19.079 17.966 -39.552 1.00 98.62 ATOM 191 CB PRO B 308 -19.221 14.879 -39.218 1.00102.78 ATOM 192 CG PRO B 308 -18.671 13.607 -38.659 1.00108.48 ATOM 193 CD PRO B 308 -17.531 14.022 -37.796 1.00103.19 ATOM 194 N SER B 309 -18.010 17.628 -37.573 1.00 93.21 ATOM 195 CA SER B 309 -18.314 18.960 -37.033 1.00 92.11 ATOM 196 C SER B 309 -17.564 20.046 -37.809 1.00 97.81 ATOM 197 O SER B 309 -18.062 21.167 -37.933 1.00 95.83 ATOM 198 CB SER B 309 -17.991 19.043 -35.545 1.00 93.35 ATOM 199 OG SER B 309 -16.593 18.980 -35.320 1.00 92.01 ATOM 200 N LEU B 310 -16.394 19.693 -38.375 1.00 97.49 ATOM 201 CA LEU B 310 -15.580 20.596 -39.190 1.00 98.31 ATOM 202 C LEU B 310 -16.130 20.687 -40.618 1.00102.30 ATOM 203 O LEU B 310 -15.659 21.505 -41.413 1.00102.26 ATOM 204 CB LEU B 310 -14.110 20.147 -39.195 1.00 98.57 ATOM 205 CG LEU B 310 -13.420 20.073 -37.834 1.00103.58 ATOM 206 CD1 LEU B 310 -12.191 19.230 -37.915 1.00103.41 ATOM 207 CD2 LEU B 310 -13.085 21.457 -37.291 1.00107.22 ATOM 208 N ASN B 311 -17.134 19.850 -40.932 1.00 98.28 ATOM 209 CA ASN B 311 -17.790 19.815 -42.229 1.00 98.21 ATOM 210 C ASN B 311 -19.139 20.519 -42.129 1.00101.82 ATOM 211 O ASN B 311 -20.162 19.893 -41.837 1.00101.98 ATOM 212 CB ASN B 311 -17.930 18.372 -42.724 1.00 98.80 ATOM 213 CG ASN B 311 -18.372 18.240 -44.163 1.00123.06 ATOM 214 OD1 ASN B 311 -18.332 19.189 -44.961 1.00115.47 ATOM 215 ND2 ASN B 311 -18.799 17.044 -44.531 1.00114.92 ATOM 216 CD CD B 501 -15.094 15.939 -33.374 1.00136.06 TER