HEADER HYDROLASE 31-DEC-69 6SCX TITLE Crystal structure of the catalytic domain of human NUDT12 in complex TITLE 2 with 7-methyl-guanosine-5'-triphosphate COMPND MOL_ID: 1; COMPND 2 MOLECULE: Peroxisomal NADH pyrophosphatase NUDT12; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.6.1.22; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.92 ANGSTORMS DBREF 6SCX C 111 462 UNP Q9BQG2 NUD12_HUMAN 111 462 SEQRES 1 C 29 PHE CYS PRO THR CYS GLY ASN ALA THR LYS ILE GLU GLU SEQRES 2 C 29 GLY GLY TYR LYS ARG LEU CYS LEU LYS GLU ASP CYS PRO SEQRES 3 C 29 SER LEU ASN ATOM 1 N PHE C 283 -22.838 4.888 -78.106 1.00 96.57 ATOM 2 CA PHE C 283 -22.103 4.183 -79.145 1.00 96.67 ATOM 3 C PHE C 283 -23.022 3.556 -80.178 1.00 96.83 ATOM 4 O PHE C 283 -24.227 3.407 -79.948 1.00 96.67 ATOM 5 CB PHE C 283 -21.189 3.117 -78.518 1.00 99.55 ATOM 6 CG PHE C 283 -20.083 3.689 -77.665 1.00102.37 ATOM 7 CD1 PHE C 283 -20.319 4.058 -76.345 1.00106.00 ATOM 8 CD2 PHE C 283 -18.805 3.862 -78.181 1.00105.80 ATOM 9 CE1 PHE C 283 -19.297 4.596 -75.559 1.00107.42 ATOM 10 CE2 PHE C 283 -17.780 4.387 -77.389 1.00108.89 ATOM 11 CZ PHE C 283 -18.032 4.747 -76.083 1.00106.89 ATOM 12 N CYS C 284 -22.442 3.199 -81.328 1.00 90.32 ATOM 13 CA CYS C 284 -23.159 2.548 -82.410 1.00 89.93 ATOM 14 C CYS C 284 -23.220 1.043 -82.118 1.00 93.62 ATOM 15 O CYS C 284 -22.177 0.412 -81.958 1.00 93.29 ATOM 16 CB CYS C 284 -22.493 2.838 -83.752 1.00 90.06 ATOM 17 SG CYS C 284 -22.883 1.639 -85.051 1.00 93.87 ATOM 18 N PRO C 285 -24.421 0.439 -82.042 1.00 89.80 ATOM 19 CA PRO C 285 -24.492 -1.008 -81.775 1.00 89.43 ATOM 20 C PRO C 285 -24.062 -1.882 -82.956 1.00 96.19 ATOM 21 O PRO C 285 -23.760 -3.056 -82.753 1.00 95.43 ATOM 22 CB PRO C 285 -25.961 -1.238 -81.418 1.00 90.43 ATOM 23 CG PRO C 285 -26.600 0.112 -81.375 1.00 94.89 ATOM 24 CD PRO C 285 -25.766 1.020 -82.193 1.00 90.32 ATOM 25 N THR C 286 -24.030 -1.321 -84.180 1.00 96.81 ATOM 26 CA THR C 286 -23.639 -2.058 -85.382 1.00 97.96 ATOM 27 C THR C 286 -22.137 -2.338 -85.421 1.00106.09 ATOM 28 O THR C 286 -21.744 -3.479 -85.666 1.00106.45 ATOM 29 CB THR C 286 -24.150 -1.346 -86.650 1.00100.93 ATOM 30 OG1 THR C 286 -25.565 -1.183 -86.558 1.00 95.94 ATOM 31 CG2 THR C 286 -23.807 -2.096 -87.932 1.00 97.99 ATOM 32 N CYS C 287 -21.306 -1.305 -85.194 1.00104.61 ATOM 33 CA CYS C 287 -19.853 -1.434 -85.282 1.00104.37 ATOM 34 C CYS C 287 -19.106 -1.147 -83.971 1.00110.27 ATOM 35 O CYS C 287 -17.939 -1.520 -83.853 1.00109.98 ATOM 36 CB CYS C 287 -19.313 -0.585 -86.427 1.00103.95 ATOM 37 SG CYS C 287 -19.141 1.174 -86.032 1.00107.43 ATOM 38 N GLY C 288 -19.759 -0.487 -83.020 1.00108.74 ATOM 39 CA GLY C 288 -19.153 -0.175 -81.731 1.00109.24 ATOM 40 C GLY C 288 -18.560 1.212 -81.595 1.00115.00 ATOM 41 O GLY C 288 -18.288 1.645 -80.472 1.00115.07 ATOM 42 N ASN C 289 -18.336 1.916 -82.721 1.00113.22 ATOM 43 CA ASN C 289 -17.756 3.262 -82.705 1.00113.92 ATOM 44 C ASN C 289 -18.697 4.310 -82.123 1.00120.67 ATOM 45 O ASN C 289 -19.911 4.107 -82.096 1.00120.38 ATOM 46 CB ASN C 289 -17.262 3.673 -84.089 1.00113.59 ATOM 47 CG ASN C 289 -15.987 2.978 -84.481 1.00153.75 ATOM 48 OD1 ASN C 289 -14.881 3.470 -84.231 1.00144.97 ATOM 49 ND2 ASN C 289 -16.111 1.815 -85.100 1.00149.24 ATOM 50 N ALA C 290 -18.122 5.427 -81.641 1.00120.49 ATOM 51 CA ALA C 290 -18.857 6.544 -81.050 1.00121.49 ATOM 52 C ALA C 290 -19.814 7.198 -82.050 1.00129.29 ATOM 53 O ALA C 290 -19.653 7.055 -83.269 1.00129.29 ATOM 54 CB ALA C 290 -17.890 7.573 -80.486 1.00122.03 ATOM 55 N THR C 291 -20.838 7.878 -81.520 1.00128.36 ATOM 56 CA THR C 291 -21.872 8.526 -82.319 1.00128.68 ATOM 57 C THR C 291 -22.017 10.014 -82.034 1.00127.72 ATOM 58 O THR C 291 -21.815 10.460 -80.903 1.00128.17 ATOM 59 CB THR C 291 -23.216 7.801 -82.167 1.00155.95 ATOM 60 OG1 THR C 291 -23.465 7.558 -80.783 1.00162.47 ATOM 61 CG2 THR C 291 -23.265 6.491 -82.933 1.00160.06 ATOM 62 N LYS C 292 -22.398 10.768 -83.073 1.00119.62 ATOM 63 CA LYS C 292 -22.627 12.209 -83.045 1.00117.00 ATOM 64 C LYS C 292 -24.123 12.477 -82.880 1.00113.88 ATOM 65 O LYS C 292 -24.944 11.817 -83.518 1.00115.04 ATOM 66 CB LYS C 292 -22.107 12.840 -84.351 1.00120.27 ATOM 67 CG LYS C 292 -22.284 14.353 -84.467 1.00132.05 ATOM 68 CD LYS C 292 -22.105 14.811 -85.907 1.00138.14 ATOM 69 CE LYS C 292 -22.350 16.290 -86.081 1.00136.75 ATOM 70 NZ LYS C 292 -22.141 16.717 -87.489 1.00141.02 ATOM 71 N ILE C 293 -24.465 13.460 -82.042 1.00103.56 ATOM 72 CA ILE C 293 -25.849 13.862 -81.800 1.00101.24 ATOM 73 C ILE C 293 -26.255 14.834 -82.899 1.00101.16 ATOM 74 O ILE C 293 -25.496 15.752 -83.221 1.00100.62 ATOM 75 CB ILE C 293 -26.030 14.481 -80.385 1.00104.39 ATOM 76 CG1 ILE C 293 -25.524 13.534 -79.277 1.00105.44 ATOM 77 CG2 ILE C 293 -27.486 14.891 -80.129 1.00103.95 ATOM 78 CD1 ILE C 293 -24.187 13.924 -78.684 1.00108.21 ATOM 79 N GLU C 294 -27.446 14.634 -83.472 1.00 94.08 ATOM 80 CA GLU C 294 -27.948 15.497 -84.533 1.00 91.94 ATOM 81 C GLU C 294 -29.458 15.626 -84.515 1.00 93.83 ATOM 82 O GLU C 294 -30.125 14.984 -83.699 1.00 92.05 ATOM 83 CB GLU C 294 -27.471 14.994 -85.898 1.00 92.65 ATOM 84 CG GLU C 294 -26.367 15.847 -86.489 1.00 94.32 ATOM 85 CD GLU C 294 -26.029 15.496 -87.921 1.00106.37 ATOM 86 OE1 GLU C 294 -26.956 15.465 -88.763 1.00101.56 ATOM 87 OE2 GLU C 294 -24.835 15.245 -88.203 1.00111.80 ATOM 88 N GLU C 295 -29.991 16.474 -85.423 1.00 90.92 ATOM 89 CA GLU C 295 -31.419 16.742 -85.617 1.00 90.72 ATOM 90 C GLU C 295 -32.102 17.212 -84.321 1.00 94.36 ATOM 91 O GLU C 295 -33.190 16.741 -83.976 1.00 94.18 ATOM 92 CB GLU C 295 -32.120 15.509 -86.219 1.00 92.16 ATOM 93 CG GLU C 295 -31.636 15.156 -87.612 1.00108.56 ATOM 94 CD GLU C 295 -32.718 15.151 -88.672 1.00142.35 ATOM 95 OE1 GLU C 295 -32.566 14.399 -89.660 1.00146.99 ATOM 96 OE2 GLU C 295 -33.716 15.894 -88.520 1.00136.30 ATOM 97 N GLY C 296 -31.426 18.104 -83.599 1.00 89.27 ATOM 98 CA GLY C 296 -31.903 18.651 -82.334 1.00 88.23 ATOM 99 C GLY C 296 -31.992 17.663 -81.183 1.00 89.33 ATOM 100 O GLY C 296 -32.661 17.944 -80.186 1.00 88.63 ATOM 101 N GLY C 297 -31.315 16.520 -81.313 1.00 84.24 ATOM 102 CA GLY C 297 -31.286 15.478 -80.290 1.00 83.10 ATOM 103 C GLY C 297 -32.264 14.337 -80.496 1.00 85.25 ATOM 104 O GLY C 297 -32.616 13.650 -79.534 1.00 83.92 ATOM 105 N TYR C 298 -32.704 14.118 -81.750 1.00 81.05 ATOM 106 CA TYR C 298 -33.634 13.040 -82.104 1.00 80.74 ATOM 107 C TYR C 298 -33.022 12.095 -83.133 1.00 84.35 ATOM 108 O TYR C 298 -33.735 11.343 -83.805 1.00 84.05 ATOM 109 CB TYR C 298 -34.985 13.603 -82.573 1.00 81.78 ATOM 110 CG TYR C 298 -35.750 14.290 -81.466 1.00 83.12 ATOM 111 CD1 TYR C 298 -35.519 15.627 -81.159 1.00 85.20 ATOM 112 CD2 TYR C 298 -36.686 13.597 -80.704 1.00 84.10 ATOM 113 CE1 TYR C 298 -36.200 16.259 -80.125 1.00 88.21 ATOM 114 CE2 TYR C 298 -37.383 14.223 -79.672 1.00 85.53 ATOM 115 CZ TYR C 298 -37.139 15.557 -79.387 1.00 96.32 ATOM 116 OH TYR C 298 -37.824 16.186 -78.376 1.00101.48 ATOM 117 N LYS C 299 -31.688 12.129 -83.235 1.00 80.84 ATOM 118 CA LYS C 299 -30.912 11.303 -84.148 1.00 80.33 ATOM 119 C LYS C 299 -29.479 11.186 -83.649 1.00 86.42 ATOM 120 O LYS C 299 -28.989 12.066 -82.936 1.00 86.04 ATOM 121 CB LYS C 299 -30.945 11.882 -85.574 1.00 82.28 ATOM 122 CG LYS C 299 -30.924 10.818 -86.664 1.00100.02 ATOM 123 CD LYS C 299 -31.149 11.432 -88.034 1.00110.39 ATOM 124 CE LYS C 299 -31.051 10.415 -89.141 1.00115.44 ATOM 125 NZ LYS C 299 -31.368 11.021 -90.459 1.00125.79 ATOM 126 N ARG C 300 -28.824 10.077 -84.001 1.00 85.58 ATOM 127 CA ARG C 300 -27.441 9.796 -83.649 1.00 86.65 ATOM 128 C ARG C 300 -26.773 9.134 -84.831 1.00 99.83 ATOM 129 O ARG C 300 -27.266 8.121 -85.335 1.00 98.97 ATOM 130 CB ARG C 300 -27.340 8.929 -82.392 1.00 81.44 ATOM 131 CG ARG C 300 -27.152 9.731 -81.115 1.00 70.51 ATOM 132 CD ARG C 300 -26.719 8.822 -79.983 1.00 67.40 ATOM 133 NE ARG C 300 -26.382 9.563 -78.766 1.00 93.76 ATOM 134 CZ ARG C 300 -25.163 10.005 -78.472 1.00139.63 ATOM 135 NH1 ARG C 300 -24.151 9.802 -79.303 1.00131.40 ATOM 136 NH2 ARG C 300 -24.952 10.670 -77.342 1.00155.24 ATOM 137 N LEU C 301 -25.671 9.731 -85.299 1.00104.70 ATOM 138 CA LEU C 301 -24.939 9.239 -86.458 1.00108.04 ATOM 139 C LEU C 301 -23.604 8.627 -86.106 1.00117.92 ATOM 140 O LEU C 301 -22.853 9.198 -85.317 1.00119.19 ATOM 141 CB LEU C 301 -24.751 10.356 -87.494 1.00108.54 ATOM 142 CG LEU C 301 -26.003 10.780 -88.256 1.00114.19 ATOM 143 CD1 LEU C 301 -25.805 12.116 -88.901 1.00114.51 ATOM 144 CD2 LEU C 301 -26.390 9.756 -89.313 1.00120.36 ATOM 145 N CYS C 302 -23.295 7.473 -86.723 1.00116.01 ATOM 146 CA CYS C 302 -22.026 6.777 -86.529 1.00116.40 ATOM 147 C CYS C 302 -20.930 7.507 -87.287 1.00125.65 ATOM 148 O CYS C 302 -21.142 7.934 -88.425 1.00126.75 ATOM 149 CB CYS C 302 -22.124 5.318 -86.954 1.00115.54 ATOM 150 SG CYS C 302 -20.608 4.370 -86.669 1.00118.90 ATOM 151 N LEU C 303 -19.764 7.656 -86.649 1.00124.18 ATOM 152 CA LEU C 303 -18.625 8.380 -87.213 1.00124.62 ATOM 153 C LEU C 303 -17.694 7.514 -88.077 1.00127.94 ATOM 154 O LEU C 303 -16.859 8.065 -88.800 1.00127.36 ATOM 155 CB LEU C 303 -17.852 9.106 -86.104 1.00125.05 ATOM 156 CG LEU C 303 -18.638 10.215 -85.409 1.00130.52 ATOM 157 CD1 LEU C 303 -18.440 10.172 -83.919 1.00129.61 ATOM 158 CD2 LEU C 303 -18.308 11.579 -85.987 1.00138.82 ATOM 159 N LYS C 304 -17.857 6.175 -88.033 1.00123.74 ATOM 160 CA LYS C 304 -17.063 5.260 -88.854 1.00123.18 ATOM 161 C LYS C 304 -17.669 5.290 -90.247 1.00127.35 ATOM 162 O LYS C 304 -18.820 4.897 -90.417 1.00126.39 ATOM 163 CB LYS C 304 -17.068 3.836 -88.272 1.00124.77 ATOM 164 N GLU C 305 -16.927 5.833 -91.222 1.00124.01 ATOM 165 CA GLU C 305 -17.380 5.998 -92.608 1.00123.54 ATOM 166 C GLU C 305 -17.963 4.739 -93.248 1.00129.17 ATOM 167 O GLU C 305 -19.062 4.789 -93.798 1.00128.16 ATOM 168 CB GLU C 305 -16.257 6.563 -93.481 1.00124.52 ATOM 169 CG GLU C 305 -15.848 7.973 -93.100 1.00134.66 ATOM 170 CD GLU C 305 -14.459 8.376 -93.551 1.00158.53 ATOM 171 OE1 GLU C 305 -14.007 7.894 -94.615 1.00171.47 ATOM 172 OE2 GLU C 305 -13.822 9.184 -92.838 1.00145.81 ATOM 173 N ASP C 306 -17.255 3.606 -93.130 1.00128.19 ATOM 174 CA ASP C 306 -17.644 2.328 -93.729 1.00129.44 ATOM 175 C ASP C 306 -18.781 1.594 -93.021 1.00132.75 ATOM 176 O ASP C 306 -19.179 0.522 -93.484 1.00134.34 ATOM 177 CB ASP C 306 -16.417 1.419 -93.851 1.00132.46 ATOM 178 CG ASP C 306 -15.317 2.010 -94.705 1.00154.72 ATOM 179 OD1 ASP C 306 -14.800 3.093 -94.345 1.00156.89 ATOM 180 OD2 ASP C 306 -14.964 1.388 -95.726 1.00165.47 ATOM 181 N CYS C 307 -19.308 2.159 -91.918 1.00125.91 ATOM 182 CA CYS C 307 -20.395 1.555 -91.144 1.00124.85 ATOM 183 C CYS C 307 -21.666 1.342 -91.981 1.00127.17 ATOM 184 O CYS C 307 -22.077 2.258 -92.702 1.00126.17 ATOM 185 CB CYS C 307 -20.687 2.368 -89.886 1.00124.54 ATOM 186 SG CYS C 307 -21.968 1.659 -88.817 1.00127.99 ATOM 187 N PRO C 308 -22.309 0.150 -91.885 1.00122.15 ATOM 188 CA PRO C 308 -23.545 -0.085 -92.652 1.00121.21 ATOM 189 C PRO C 308 -24.755 0.721 -92.173 1.00122.79 ATOM 190 O PRO C 308 -25.745 0.774 -92.902 1.00121.74 ATOM 191 CB PRO C 308 -23.790 -1.593 -92.489 1.00123.11 ATOM 192 CG PRO C 308 -22.533 -2.152 -91.905 1.00127.99 ATOM 193 CD PRO C 308 -21.951 -1.045 -91.098 1.00123.85 ATOM 194 N SER C 309 -24.695 1.340 -90.967 1.00116.97 ATOM 195 CA SER C 309 -25.809 2.142 -90.439 1.00116.24 ATOM 196 C SER C 309 -26.023 3.413 -91.262 1.00114.60 ATOM 197 O SER C 309 -27.150 3.902 -91.355 1.00114.14 ATOM 198 CB SER C 309 -25.589 2.496 -88.971 1.00121.08 ATOM 199 OG SER C 309 -24.561 3.460 -88.811 1.00133.84 ATOM 200 N LEU C 310 -24.944 3.925 -91.876 1.00108.43 ATOM 201 CA LEU C 310 -24.973 5.134 -92.697 1.00107.71 ATOM 202 C LEU C 310 -25.511 4.886 -94.108 1.00112.64 ATOM 203 O LEU C 310 -25.804 5.843 -94.830 1.00112.87 ATOM 204 CB LEU C 310 -23.587 5.791 -92.738 1.00107.34 ATOM 205 CG LEU C 310 -23.003 6.196 -91.385 1.00111.16 ATOM 206 CD1 LEU C 310 -21.527 6.382 -91.485 1.00111.68 ATOM 207 CD2 LEU C 310 -23.665 7.454 -90.838 1.00109.68 ATOM 208 N ASN C 311 -25.649 3.608 -94.493 1.00109.03 ATOM 209 CA ASN C 311 -26.181 3.228 -95.793 1.00108.29 ATOM 210 C ASN C 311 -27.607 2.721 -95.615 1.00112.49 ATOM 211 O ASN C 311 -27.832 1.538 -95.342 1.00111.72 ATOM 212 CB ASN C 311 -25.277 2.204 -96.491 1.00110.01 ATOM 213 CG ASN C 311 -25.636 1.935 -97.937 1.00149.35 ATOM 214 OD1 ASN C 311 -26.423 2.652 -98.574 1.00144.68 ATOM 215 ND2 ASN C 311 -25.060 0.884 -98.494 1.00142.77 ATOM 216 CD CD C 501 -21.171 2.070 -86.857 1.00149.78 TER