HEADER HYDROLASE 31-DEC-69 6T57 TITLE Thrombin in Complex with a D-Phe-Pro-N-amidinopiperidine Derivative COMPND MOL_ID: 1; COMPND 2 MOLECULE: Prothrombin; COMPND 3 CHAIN: L; COMPND 4 EC: 3.4.21.5; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.57 ANGSTORMS DBREF 6T57 L -4 17 UNP P00734 THRB_HUMAN 328 363 SEQRES 1 L 28 GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SEQRES 2 L 28 SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER SEQRES 3 L 28 TYR ILE ATOM 1 N GLU L 1C 14.887 17.984 17.103 1.00 63.06 ATOM 2 CA GLU L 1C 14.883 17.436 18.454 1.00 61.09 ATOM 3 C GLU L 1C 14.252 18.410 19.452 1.00 53.72 ATOM 4 O GLU L 1C 13.792 18.007 20.516 1.00 46.05 ATOM 5 CB GLU L 1C 16.304 17.069 18.889 1.00 61.45 ATOM 6 N ALA L 1B 14.221 19.701 19.113 1.00 50.77 ATOM 7 CA ALA L 1B 13.477 20.639 19.947 1.00 45.63 ATOM 8 C ALA L 1B 12.006 20.251 20.015 1.00 34.86 ATOM 9 O ALA L 1B 11.334 20.487 21.026 1.00 37.94 ATOM 10 CB ALA L 1B 13.634 22.063 19.410 1.00 50.85 ATOM 11 N ASP L 1A 11.508 19.621 18.959 1.00 33.94 ATOM 12 CA ASP L 1A 10.125 19.196 18.852 1.00 29.63 ATOM 13 C ASP L 1A 9.962 17.685 19.052 1.00 28.21 ATOM 14 O ASP L 1A 8.928 17.124 18.680 1.00 29.57 ATOM 15 CB ASP L 1A 9.594 19.633 17.488 1.00 32.66 ATOM 16 CG ASP L 1A 8.103 19.657 17.431 1.00 44.44 ATOM 17 OD1 ASP L 1A 7.547 19.207 16.405 1.00 48.59 ATOM 18 OD2 ASP L 1A 7.492 20.109 18.420 1.00 43.98 ATOM 19 N CYS L 1 10.954 17.027 19.646 1.00 26.71 ATOM 20 CA CYS L 1 10.930 15.575 19.765 1.00 25.78 ATOM 21 C CYS L 1 9.729 15.122 20.587 1.00 22.49 ATOM 22 O CYS L 1 9.275 15.820 21.499 1.00 22.44 ATOM 23 CB CYS L 1 12.228 15.056 20.417 1.00 24.29 ATOM 24 SG CYS L 1 12.495 15.514 22.153 1.00 28.16 ATOM 25 N GLY L 2 9.246 13.912 20.284 1.00 22.36 ATOM 26 CA GLY L 2 8.279 13.247 21.128 1.00 23.73 ATOM 27 C GLY L 2 6.864 13.773 21.080 1.00 22.90 ATOM 28 O GLY L 2 6.050 13.377 21.914 1.00 21.82 ATOM 29 N LEU L 3 6.547 14.675 20.152 1.00 22.02 ATOM 30 CA LEU L 3 5.208 15.233 20.016 1.00 20.99 ATOM 31 C LEU L 3 4.693 14.820 18.650 1.00 22.04 ATOM 32 O LEU L 3 5.287 15.185 17.626 1.00 28.57 ATOM 33 CB LEU L 3 5.219 16.755 20.158 1.00 22.69 ATOM 34 CG LEU L 3 5.727 17.272 21.498 1.00 22.72 ATOM 35 CD1 LEU L 3 5.946 18.785 21.402 1.00 26.58 ATOM 36 CD2 LEU L 3 4.733 16.944 22.607 1.00 25.71 ATOM 37 N ARG L 4 3.603 14.040 18.636 1.00 20.66 ATOM 38 CA ARG L 4 3.167 13.393 17.395 1.00 20.39 ATOM 39 C ARG L 4 2.254 14.334 16.613 1.00 22.91 ATOM 40 O ARG L 4 1.322 14.912 17.195 1.00 23.88 ATOM 41 CB ARG L 4 2.440 12.087 17.688 1.00 20.68 ATOM 42 CG ARG L 4 3.324 11.043 18.402 1.00 23.18 ATOM 43 CD ARG L 4 2.502 9.874 18.933 1.00 24.91 ATOM 44 NE ARG L 4 1.544 10.268 19.970 1.00 21.75 ATOM 45 CZ ARG L 4 0.632 9.447 20.483 1.00 20.09 ATOM 46 NH1 ARG L 4 0.566 8.187 20.042 1.00 19.70 ATOM 47 NH2 ARG L 4 -0.212 9.861 21.422 1.00 21.42 ATOM 48 N PRO L 5 2.482 14.478 15.311 1.00 21.18 ATOM 49 CA PRO L 5 1.621 15.367 14.506 1.00 22.14 ATOM 50 C PRO L 5 0.139 15.054 14.592 1.00 24.21 ATOM 51 O PRO L 5 -0.681 15.981 14.640 1.00 26.26 ATOM 52 CB PRO L 5 2.150 15.153 13.082 1.00 25.47 ATOM 53 CG PRO L 5 3.594 14.898 13.273 1.00 24.76 ATOM 54 CD PRO L 5 3.666 14.040 14.550 1.00 22.06 ATOM 55 N LEU L 6 -0.232 13.781 14.590 1.00 24.68 ATOM 56 CA LEU L 6 -1.632 13.382 14.576 1.00 23.94 ATOM 57 C LEU L 6 -2.218 13.213 15.969 1.00 24.71 ATOM 58 O LEU L 6 -3.390 12.840 16.093 1.00 24.76 ATOM 59 CB LEU L 6 -1.800 12.093 13.762 1.00 27.52 ATOM 60 CG LEU L 6 -1.507 12.252 12.266 1.00 24.72 ATOM 61 CD1 LEU L 6 -1.670 10.921 11.526 1.00 26.56 ATOM 62 CD2 LEU L 6 -2.419 13.308 11.642 1.00 26.18 ATOM 63 N PHE L 7 -1.448 13.499 17.024 1.00 23.38 ATOM 64 CA PHE L 7 -1.966 13.353 18.375 1.00 23.58 ATOM 65 C PHE L 7 -1.645 14.586 19.213 1.00 23.88 ATOM 66 O PHE L 7 -2.468 15.512 19.241 1.00 24.91 ATOM 67 CB PHE L 7 -1.454 12.037 18.977 1.00 24.75 ATOM 68 CG PHE L 7 -2.089 10.830 18.326 1.00 22.47 ATOM 69 CD1 PHE L 7 -3.394 10.477 18.642 1.00 23.01 ATOM 70 CD2 PHE L 7 -1.421 10.114 17.330 1.00 24.54 ATOM 71 CE1 PHE L 7 -4.015 9.382 18.007 1.00 24.73 ATOM 72 CE2 PHE L 7 -2.034 9.037 16.695 1.00 23.30 ATOM 73 CZ PHE L 7 -3.330 8.671 17.041 1.00 22.00 ATOM 74 N GLU L 8 -0.469 14.649 19.856 1.00 21.74 ATOM 75 CA GLU L 8 -0.164 15.802 20.714 1.00 21.19 ATOM 76 C GLU L 8 -0.286 17.126 19.967 1.00 25.08 ATOM 77 O GLU L 8 -0.806 18.102 20.521 1.00 25.22 ATOM 78 CB GLU L 8 1.240 15.697 21.303 1.00 22.64 ATOM 79 CG GLU L 8 1.401 14.631 22.394 1.00 21.57 ATOM 80 CD GLU L 8 1.423 13.213 21.850 1.00 22.85 ATOM 81 OE1 GLU L 8 1.098 12.298 22.634 1.00 22.41 ATOM 82 OE2 GLU L 8 1.790 13.017 20.668 1.00 22.50 ATOM 83 N LYS L 9 0.237 17.195 18.736 1.00 24.38 ATOM 84 CA LYS L 9 0.219 18.460 17.994 1.00 25.93 ATOM 85 C LYS L 9 -1.184 18.992 17.764 1.00 28.07 ATOM 86 O LYS L 9 -1.351 20.205 17.598 1.00 29.20 ATOM 87 CB LYS L 9 0.904 18.312 16.636 1.00 26.14 ATOM 88 CG LYS L 9 2.398 18.110 16.710 1.00 35.53 ATOM 89 CD LYS L 9 3.062 19.220 17.492 1.00 47.04 ATOM 90 CE LYS L 9 4.545 19.255 17.224 1.00 47.84 ATOM 91 NZ LYS L 9 5.161 20.483 17.787 1.00 51.68 ATOM 92 N LYS L 10 -2.199 18.128 17.704 1.00 24.00 ATOM 93 CA LYS L 10 -3.571 18.600 17.524 1.00 28.78 ATOM 94 C LYS L 10 -4.446 18.291 18.741 1.00 29.81 ATOM 95 O LYS L 10 -5.674 18.283 18.640 1.00 30.38 ATOM 96 CB LYS L 10 -4.168 18.028 16.228 1.00 32.71 ATOM 97 CG LYS L 10 -4.106 16.534 16.075 1.00 36.36 ATOM 98 CD LYS L 10 -4.335 16.097 14.612 1.00 36.29 ATOM 99 CE LYS L 10 -5.705 16.499 14.104 1.00 38.61 ATOM 100 NZ LYS L 10 -6.000 15.933 12.748 1.00 38.83 ATOM 101 N SER L 11 -3.822 18.063 19.900 1.00 25.25 ATOM 102 CA SER L 11 -4.497 17.738 21.162 1.00 23.15 ATOM 103 C SER L 11 -5.540 16.627 21.003 1.00 29.86 ATOM 104 O SER L 11 -6.667 16.720 21.488 1.00 32.36 ATOM 105 CB SER L 11 -5.127 18.988 21.795 1.00 24.67 ATOM 106 OG SER L 11 -5.318 18.735 23.176 1.00 28.99 ATOM 107 N LEU L 12 -5.146 15.553 20.322 1.00 25.76 ATOM 108 CA LEU L 12 -5.906 14.314 20.276 1.00 27.76 ATOM 109 C LEU L 12 -5.126 13.226 21.004 1.00 27.83 ATOM 110 O LEU L 12 -3.897 13.208 20.976 1.00 27.15 ATOM 111 CB LEU L 12 -6.174 13.872 18.830 1.00 28.97 ATOM 112 CG LEU L 12 -7.038 14.785 17.948 1.00 29.39 ATOM 113 CD1 LEU L 12 -7.151 14.191 16.541 1.00 28.07 ATOM 114 CD2 LEU L 12 -8.409 14.983 18.558 1.00 36.78 ATOM 115 N GLU L 13 -5.842 12.324 21.660 1.00 29.99 ATOM 116 CA GLU L 13 -5.209 11.222 22.372 1.00 31.37 ATOM 117 C GLU L 13 -5.460 9.915 21.640 1.00 29.39 ATOM 118 O GLU L 13 -6.509 9.736 21.006 1.00 27.17 ATOM 119 CB GLU L 13 -5.724 11.128 23.808 1.00 33.14 ATOM 120 CG GLU L 13 -5.274 12.296 24.659 1.00 39.80 ATOM 121 CD GLU L 13 -5.680 12.153 26.106 1.00 54.58 ATOM 122 OE1 GLU L 13 -6.226 11.087 26.469 1.00 61.85 ATOM 123 OE2 GLU L 13 -5.449 13.108 26.877 1.00 58.12 ATOM 124 N ASP L 14 -4.480 9.008 21.717 1.00 25.82 ATOM 125 CA ASP L 14 -4.680 7.700 21.117 1.00 26.05 ATOM 126 C ASP L 14 -5.469 6.813 22.080 1.00 24.71 ATOM 127 O ASP L 14 -5.750 7.187 23.218 1.00 28.26 ATOM 128 CB ASP L 14 -3.338 7.082 20.677 1.00 25.28 ATOM 129 CG ASP L 14 -2.451 6.624 21.838 1.00 26.59 ATOM 130 OD1 ASP L 14 -2.933 5.924 22.745 1.00 25.57 ATOM 131 OD2 ASP L 14 -1.238 6.937 21.808 1.00 26.26 ATOM 132 N LYS L 14A -5.843 5.625 21.602 1.00 31.06 ATOM 133 CA LYS L 14A -6.856 4.830 22.294 1.00 33.35 ATOM 134 C LYS L 14A -6.382 4.222 23.614 1.00 33.02 ATOM 135 O LYS L 14A -7.226 3.847 24.433 1.00 33.40 ATOM 136 CB LYS L 14A -7.359 3.711 21.378 1.00 38.39 ATOM 137 CG LYS L 14A -8.307 4.202 20.280 1.00 47.53 ATOM 138 N THR L 14B -5.074 4.110 23.860 1.00 26.94 ATOM 139 CA THR L 14B -4.623 3.472 25.092 1.00 28.02 ATOM 140 C THR L 14B -3.567 4.247 25.871 1.00 29.43 ATOM 141 O THR L 14B -3.019 3.703 26.836 1.00 32.79 ATOM 142 CB THR L 14B -4.078 2.062 24.817 1.00 29.95 ATOM 143 OG1 THR L 14B -2.869 2.146 24.052 1.00 27.71 ATOM 144 CG2 THR L 14B -5.094 1.226 24.069 1.00 32.55 ATOM 145 N GLU L 14C -3.262 5.492 25.505 1.00 24.61 ATOM 146 CA GLU L 14C -2.266 6.217 26.287 1.00 23.75 ATOM 147 C GLU L 14C -2.756 6.531 27.696 1.00 25.13 ATOM 148 O GLU L 14C -1.928 6.723 28.590 1.00 26.13 ATOM 149 CB GLU L 14C -1.841 7.498 25.570 1.00 24.30 ATOM 150 CG GLU L 14C -2.941 8.523 25.316 1.00 25.75 ATOM 151 CD GLU L 14C -2.382 9.801 24.725 1.00 26.28 ATOM 152 OE1 GLU L 14C -2.303 9.906 23.471 1.00 24.68 ATOM 153 OE2 GLU L 14C -2.004 10.698 25.528 1.00 25.13 ATOM 154 N ARG L 14D -4.074 6.574 27.922 1.00 26.58 ATOM 155 CA ARG L 14D -4.570 6.775 29.281 1.00 29.94 ATOM 156 C ARG L 14D -4.121 5.652 30.209 1.00 27.92 ATOM 157 O ARG L 14D -3.918 5.884 31.406 1.00 28.43 ATOM 158 CB ARG L 14D -6.093 6.872 29.288 1.00 34.03 ATOM 159 CG ARG L 14D -6.678 7.224 30.655 1.00 37.07 ATOM 160 N GLU L 14E -3.958 4.437 29.680 1.00 25.75 ATOM 161 CA GLU L 14E -3.503 3.326 30.514 1.00 26.98 ATOM 162 C GLU L 14E -2.107 3.599 31.064 1.00 26.15 ATOM 163 O GLU L 14E -1.793 3.243 32.211 1.00 28.23 ATOM 164 CB GLU L 14E -3.535 2.030 29.706 1.00 28.66 ATOM 165 CG GLU L 14E -3.009 0.805 30.456 1.00 32.25 ATOM 166 CD GLU L 14E -2.904 -0.447 29.593 1.00 36.93 ATOM 167 OE1 GLU L 14E -3.168 -0.387 28.366 1.00 33.07 ATOM 168 OE2 GLU L 14E -2.547 -1.505 30.155 1.00 33.55 ATOM 169 N LEU L 14F -1.259 4.244 30.259 1.00 23.39 ATOM 170 CA LEU L 14F 0.065 4.639 30.725 1.00 23.95 ATOM 171 C LEU L 14F -0.028 5.700 31.823 1.00 23.82 ATOM 172 O LEU L 14F 0.595 5.561 32.878 1.00 25.12 ATOM 173 CB LEU L 14F 0.911 5.148 29.553 1.00 23.78 ATOM 174 CG LEU L 14F 1.032 4.279 28.293 1.00 27.37 ATOM 175 CD1 LEU L 14F 2.067 4.867 27.345 1.00 28.04 ATOM 176 CD2 LEU L 14F 1.387 2.857 28.646 1.00 28.04 ATOM 177 N LEU L 14G -0.782 6.782 31.581 1.00 23.56 ATOM 178 CA LEU L 14G -0.892 7.855 32.574 1.00 22.44 ATOM 179 C LEU L 14G -1.392 7.318 33.915 1.00 26.36 ATOM 180 O LEU L 14G -0.867 7.679 34.979 1.00 27.58 ATOM 181 CB LEU L 14G -1.820 8.954 32.055 1.00 25.06 ATOM 182 CG LEU L 14G -2.069 10.110 33.038 1.00 31.86 ATOM 183 CD1 LEU L 14G -0.762 10.811 33.414 1.00 32.30 ATOM 184 N GLU L 14H -2.377 6.418 33.877 1.00 25.44 ATOM 185 CA GLU L 14H -2.948 5.888 35.112 1.00 29.72 ATOM 186 C GLU L 14H -1.945 5.069 35.906 1.00 30.36 ATOM 187 O GLU L 14H -2.065 4.969 37.131 1.00 30.18 ATOM 188 CB GLU L 14H -4.167 5.038 34.790 1.00 28.26 ATOM 189 CG GLU L 14H -5.373 5.878 34.455 1.00 31.57 ATOM 190 CD GLU L 14H -6.591 5.032 34.163 1.00 45.79 ATOM 191 OE1 GLU L 14H -6.440 3.797 34.047 1.00 54.51 ATOM 192 OE2 GLU L 14H -7.696 5.604 34.056 1.00 56.80 ATOM 193 N SER L 14I -0.957 4.477 35.240 1.00 26.38 ATOM 194 CA SER L 14I 0.023 3.678 35.962 1.00 26.60 ATOM 195 C SER L 14I 1.024 4.534 36.730 1.00 27.30 ATOM 196 O SER L 14I 1.727 4.004 37.600 1.00 29.39 ATOM 197 CB SER L 14I 0.754 2.739 34.993 1.00 23.01 ATOM 198 OG SER L 14I 1.704 3.438 34.190 1.00 25.70 ATOM 199 N TYR L 14J 1.100 5.850 36.505 0.50 26.82 ATOM 200 CA TYR L 14J 2.164 6.651 37.131 0.50 30.63 ATOM 201 C TYR L 14J 1.662 7.256 38.454 0.50 36.27 ATOM 202 O TYR L 14J 1.181 8.393 38.500 0.50 35.09 ATOM 203 CB TYR L 14J 2.671 7.722 36.159 0.50 27.49 ATOM 204 CG TYR L 14J 3.125 7.250 34.762 0.50 25.03 ATOM 205 CD1 TYR L 14J 3.671 5.988 34.553 0.50 21.71 ATOM 206 CD2 TYR L 14J 3.020 8.097 33.654 0.50 20.73 ATOM 207 CE1 TYR L 14J 4.086 5.577 33.273 0.50 22.06 ATOM 208 CE2 TYR L 14J 3.428 7.692 32.382 0.50 23.30 ATOM 209 CZ TYR L 14J 3.958 6.437 32.195 0.50 23.38 ATOM 210 OH TYR L 14J 4.360 6.044 30.934 0.50 28.85 ATOM 211 N ILE L 14K 1.821 6.500 39.554 1.00 40.37 ATOM 212 CA ILE L 14K 1.308 6.810 40.885 1.00 53.01 ATOM 213 C ILE L 14K 2.456 7.226 41.799 1.00 61.48 ATOM 214 O ILE L 14K 3.097 8.256 41.588 1.00 67.10 ATOM 215 CB ILE L 14K 0.540 5.608 41.512 1.00 53.68 ATOM 216 CG1 ILE L 14K 1.483 4.427 41.741 1.00 55.18 ATOM 217 CG2 ILE L 14K -0.668 5.190 40.666 1.00 49.43 ATOM 218 CD1 ILE L 14K 0.871 3.326 42.588 1.00 61.01 TER