HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6VOY TITLE Cryo-EM structure of HTLV-1 instasome COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-binding protein 7d; COMPND 3 CHAIN: A, B, C, D; COMPND 4 MUTATION: YES; COMPND 5 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG D 132 REMARK 465 LYS D 133 DBREF 6VOY D -74 -11 UNP P39476 DN7D_SACS2 1 64 DBREF 6VOY D 1 295 UNP A0A1Y1CA A0A1Y1CAW1_ 569 863 SEQRES 1 D 38 SER PRO ALA GLU LEU HIS SER PHE THR HIS CYS GLY GLN SEQRES 2 D 38 THR ALA LEU THR LEU GLN GLY ALA THR THR THR GLU ALA SEQRES 3 D 38 SER ASN ILE LEU ARG SER CYS HIS ALA CYS ARG LYS ATOM 1 N SER D 1 75.965 89.783 124.694 1.00236.72 ATOM 2 CA SER D 1 76.139 91.227 124.787 1.00236.72 ATOM 3 C SER D 1 74.832 92.032 124.823 1.00236.72 ATOM 4 O SER D 1 74.683 92.882 125.695 1.00236.72 ATOM 5 CB SER D 1 77.026 91.731 123.643 1.00236.72 ATOM 6 OG SER D 1 76.703 91.117 122.411 1.00236.72 ATOM 7 N PRO D 2 73.896 91.799 123.892 1.00241.45 ATOM 8 CA PRO D 2 72.723 92.683 123.848 1.00241.45 ATOM 9 C PRO D 2 71.920 92.703 125.131 1.00241.45 ATOM 10 O PRO D 2 71.441 93.776 125.519 1.00241.45 ATOM 11 CB PRO D 2 71.905 92.133 122.671 1.00241.45 ATOM 12 CG PRO D 2 72.858 91.306 121.895 1.00241.45 ATOM 13 CD PRO D 2 73.752 90.708 122.914 1.00241.45 ATOM 14 N ALA D 3 71.837 91.588 125.861 1.00245.65 ATOM 15 CA ALA D 3 71.233 91.660 127.187 1.00245.65 ATOM 16 C ALA D 3 72.122 92.438 128.139 1.00245.65 ATOM 17 O ALA D 3 71.624 93.203 128.983 1.00245.65 ATOM 18 CB ALA D 3 70.967 90.259 127.731 1.00245.65 ATOM 19 N GLU D 4 73.418 92.469 127.858 1.00236.32 ATOM 20 CA GLU D 4 74.211 93.241 128.786 1.00236.32 ATOM 21 C GLU D 4 74.237 94.677 128.323 1.00236.32 ATOM 22 O GLU D 4 74.243 95.583 129.162 1.00236.32 ATOM 23 CB GLU D 4 75.639 92.702 128.842 1.00236.32 ATOM 24 CG GLU D 4 76.437 93.258 129.999 1.00236.32 ATOM 25 CD GLU D 4 77.025 94.619 129.700 1.00236.32 ATOM 26 OE1 GLU D 4 76.988 95.489 130.593 1.00236.32 ATOM 27 OE2 GLU D 4 77.505 94.824 128.569 1.00236.32 ATOM 28 N LEU D 5 74.337 94.920 127.013 1.00234.67 ATOM 29 CA LEU D 5 74.373 96.314 126.617 1.00234.67 ATOM 30 C LEU D 5 73.071 96.965 127.040 1.00234.67 ATOM 31 O LEU D 5 73.043 98.148 127.422 1.00234.67 ATOM 32 CB LEU D 5 74.528 96.420 125.106 1.00234.67 ATOM 33 CG LEU D 5 75.964 96.558 124.627 1.00234.67 ATOM 34 CD1 LEU D 5 76.528 97.862 125.139 1.00234.67 ATOM 35 CD2 LEU D 5 76.807 95.379 125.077 1.00234.67 ATOM 36 N HIS D 6 71.992 96.173 127.087 1.00247.62 ATOM 37 CA HIS D 6 70.769 96.713 127.638 1.00247.62 ATOM 38 C HIS D 6 70.999 97.087 129.084 1.00247.62 ATOM 39 O HIS D 6 70.940 98.256 129.441 1.00247.62 ATOM 40 CB HIS D 6 69.577 95.776 127.516 1.00247.62 ATOM 41 CG HIS D 6 68.431 96.206 128.376 1.00247.62 ATOM 42 ND1 HIS D 6 67.548 97.185 127.977 1.00247.62 ATOM 43 CD2 HIS D 6 68.054 95.845 129.625 1.00247.62 ATOM 44 CE1 HIS D 6 66.659 97.389 128.930 1.00247.62 ATOM 45 NE2 HIS D 6 66.944 96.592 129.944 1.00247.62 ATOM 46 N SER D 7 71.337 96.111 129.931 1.00235.75 ATOM 47 CA SER D 7 71.372 96.472 131.345 1.00235.75 ATOM 48 C SER D 7 72.326 97.632 131.596 1.00235.75 ATOM 49 O SER D 7 72.171 98.358 132.581 1.00235.75 ATOM 50 CB SER D 7 71.756 95.277 132.208 1.00235.75 ATOM 51 OG SER D 7 71.752 95.635 133.577 1.00235.75 ATOM 52 N PHE D 8 73.296 97.818 130.702 1.00205.59 ATOM 53 CA PHE D 8 74.197 98.963 130.754 1.00205.59 ATOM 54 C PHE D 8 73.487 100.280 130.463 1.00205.59 ATOM 55 O PHE D 8 73.819 101.309 131.060 1.00205.59 ATOM 56 CB PHE D 8 75.366 98.756 129.795 1.00205.59 ATOM 57 CG PHE D 8 76.613 99.499 130.187 1.00205.59 ATOM 58 CD1 PHE D 8 77.129 99.382 131.462 1.00205.59 ATOM 59 CD2 PHE D 8 77.278 100.297 129.277 1.00205.59 ATOM 60 CE1 PHE D 8 78.277 100.055 131.821 1.00205.59 ATOM 61 CE2 PHE D 8 78.421 100.971 129.635 1.00205.59 ATOM 62 CZ PHE D 8 78.921 100.850 130.906 1.00205.59 ATOM 63 N THR D 9 72.516 100.278 129.540 1.00206.01 ATOM 64 CA THR D 9 71.920 101.548 129.100 1.00206.01 ATOM 65 C THR D 9 70.395 101.645 129.090 1.00206.01 ATOM 66 O THR D 9 69.886 102.767 129.065 1.00206.01 ATOM 67 CB THR D 9 72.441 101.953 127.717 1.00206.01 ATOM 68 OG1 THR D 9 71.797 101.154 126.720 1.00206.01 ATOM 69 CG2 THR D 9 73.944 101.782 127.628 1.00206.01 ATOM 70 N HIS D 10 69.658 100.540 129.107 1.00247.78 ATOM 71 CA HIS D 10 68.195 100.519 129.102 1.00247.78 ATOM 72 C HIS D 10 67.578 101.236 127.900 1.00247.78 ATOM 73 O HIS D 10 66.849 102.219 128.027 1.00247.78 ATOM 74 CB HIS D 10 67.605 101.010 130.426 1.00247.78 ATOM 75 CG HIS D 10 67.348 99.917 131.410 1.00247.78 ATOM 76 ND1 HIS D 10 68.154 99.699 132.505 1.00247.78 ATOM 77 CD2 HIS D 10 66.361 98.995 131.480 1.00247.78 ATOM 78 CE1 HIS D 10 67.683 98.679 133.199 1.00247.78 ATOM 79 NE2 HIS D 10 66.596 98.233 132.597 1.00247.78 ATOM 80 N CYS D 11 67.889 100.714 126.718 1.00274.38 ATOM 81 CA CYS D 11 67.146 101.078 125.520 1.00274.38 ATOM 82 C CYS D 11 65.849 100.265 125.491 1.00274.38 ATOM 83 O CYS D 11 65.498 99.578 126.454 1.00274.38 ATOM 84 CB CYS D 11 67.992 100.857 124.272 1.00274.38 ATOM 85 SG CYS D 11 67.183 101.365 122.745 1.00274.38 ATOM 86 N GLY D 12 65.123 100.322 124.376 1.00311.01 ATOM 87 CA GLY D 12 63.753 99.836 124.321 1.00311.01 ATOM 88 C GLY D 12 63.511 98.589 123.496 1.00311.01 ATOM 89 O GLY D 12 63.767 97.470 123.950 1.00311.01 ATOM 90 N GLN D 13 62.968 98.777 122.293 1.00335.58 ATOM 91 CA GLN D 13 62.556 97.674 121.435 1.00335.58 ATOM 92 C GLN D 13 63.213 97.765 120.062 1.00335.58 ATOM 93 O GLN D 13 63.550 96.744 119.454 1.00335.58 ATOM 94 CB GLN D 13 61.030 97.678 121.293 1.00335.58 ATOM 95 CG GLN D 13 60.406 96.587 120.408 1.00335.58 ATOM 96 CD GLN D 13 60.641 95.164 120.895 1.00335.58 ATOM 97 OE1 GLN D 13 61.654 94.857 121.515 1.00335.58 ATOM 98 NE2 GLN D 13 59.684 94.287 120.614 1.00335.58 ATOM 99 N THR D 14 63.404 98.990 119.571 1.00320.98 ATOM 100 CA THR D 14 63.691 99.207 118.156 1.00320.98 ATOM 101 C THR D 14 65.148 98.924 117.807 1.00320.98 ATOM 102 O THR D 14 65.444 98.055 116.981 1.00320.98 ATOM 103 CB THR D 14 63.346 100.645 117.773 1.00320.98 ATOM 104 OG1 THR D 14 64.438 101.501 118.132 1.00320.98 ATOM 105 CG2 THR D 14 62.099 101.103 118.507 1.00320.98 ATOM 106 N ALA D 15 66.072 99.642 118.444 1.00318.52 ATOM 107 CA ALA D 15 67.445 99.776 117.977 1.00318.52 ATOM 108 C ALA D 15 68.356 98.659 118.465 1.00318.52 ATOM 109 O ALA D 15 69.580 98.829 118.473 1.00318.52 ATOM 110 CB ALA D 15 68.013 101.133 118.391 1.00318.52 ATOM 111 N LEU D 16 67.788 97.531 118.882 1.00332.39 ATOM 112 CA LEU D 16 68.559 96.403 119.387 1.00332.39 ATOM 113 C LEU D 16 68.746 95.286 118.372 1.00332.39 ATOM 114 O LEU D 16 69.813 94.662 118.352 1.00332.39 ATOM 115 CB LEU D 16 67.907 95.822 120.642 1.00332.39 ATOM 116 CG LEU D 16 68.202 96.518 121.967 1.00332.39 ATOM 117 CD1 LEU D 16 69.683 96.414 122.264 1.00332.39 ATOM 118 CD2 LEU D 16 67.739 97.966 121.972 1.00332.39 ATOM 119 N THR D 17 67.760 95.026 117.509 1.00342.54 ATOM 120 CA THR D 17 67.938 93.958 116.533 1.00342.54 ATOM 121 C THR D 17 69.025 94.297 115.533 1.00342.54 ATOM 122 O THR D 17 69.624 93.383 114.953 1.00342.54 ATOM 123 CB THR D 17 66.619 93.709 115.786 1.00342.54 ATOM 124 OG1 THR D 17 66.663 92.435 115.130 1.00342.54 ATOM 125 CG2 THR D 17 66.368 94.792 114.745 1.00342.54 ATOM 126 N LEU D 18 69.424 95.562 115.465 1.00332.59 ATOM 127 CA LEU D 18 70.474 95.942 114.543 1.00332.59 ATOM 128 C LEU D 18 71.841 95.617 115.108 1.00332.59 ATOM 129 O LEU D 18 72.856 95.927 114.477 1.00332.59 ATOM 130 CB LEU D 18 70.354 97.422 114.174 1.00332.59 ATOM 131 CG LEU D 18 70.457 98.453 115.291 1.00332.59 ATOM 132 CD1 LEU D 18 71.876 98.966 115.413 1.00332.59 ATOM 133 CD2 LEU D 18 69.500 99.588 115.039 1.00332.59 ATOM 134 N GLN D 19 71.877 94.999 116.287 1.00333.02 ATOM 135 CA GLN D 19 73.108 94.478 116.843 1.00333.02 ATOM 136 C GLN D 19 73.155 92.961 116.778 1.00333.02 ATOM 137 O GLN D 19 74.200 92.380 117.090 1.00333.02 ATOM 138 CB GLN D 19 73.273 94.938 118.299 1.00333.02 ATOM 139 CG GLN D 19 73.492 96.434 118.453 1.00333.02 ATOM 140 CD GLN D 19 72.197 97.222 118.382 1.00333.02 ATOM 141 OE1 GLN D 19 71.242 96.801 117.741 1.00333.02 ATOM 142 NE2 GLN D 19 72.160 98.371 119.045 1.00333.02 ATOM 143 N GLY D 20 72.058 92.305 116.383 1.00339.02 ATOM 144 CA GLY D 20 72.100 90.866 116.196 1.00339.02 ATOM 145 C GLY D 20 70.995 90.064 116.852 1.00339.02 ATOM 146 O GLY D 20 71.053 88.832 116.874 1.00339.02 ATOM 147 N ALA D 21 69.987 90.738 117.387 1.00353.96 ATOM 148 CA ALA D 21 68.868 90.072 118.034 1.00353.96 ATOM 149 C ALA D 21 67.709 89.949 117.055 1.00353.96 ATOM 150 O ALA D 21 67.530 90.789 116.173 1.00353.96 ATOM 151 CB ALA D 21 68.422 90.826 119.287 1.00353.96 ATOM 152 N THR D 22 66.947 88.875 117.183 1.00373.47 ATOM 153 CA THR D 22 65.815 88.697 116.290 1.00373.47 ATOM 154 C THR D 22 64.643 89.527 116.795 1.00373.47 ATOM 155 O THR D 22 64.766 90.328 117.724 1.00373.47 ATOM 156 CB THR D 22 65.441 87.224 116.197 1.00373.47 ATOM 157 OG1 THR D 22 64.638 86.873 117.330 1.00373.47 ATOM 158 CG2 THR D 22 66.688 86.358 116.180 1.00373.47 ATOM 159 N THR D 23 63.479 89.327 116.181 1.00383.85 ATOM 160 CA THR D 23 62.271 90.033 116.590 1.00383.85 ATOM 161 C THR D 23 61.918 89.693 118.032 1.00383.85 ATOM 162 O THR D 23 61.856 90.564 118.918 1.00383.85 ATOM 163 CB THR D 23 61.135 89.640 115.651 1.00383.85 ATOM 164 OG1 THR D 23 60.894 88.234 115.771 1.00383.85 ATOM 165 CG2 THR D 23 61.509 89.950 114.216 1.00383.85 ATOM 166 N THR D 24 61.664 88.415 118.280 1.00385.75 ATOM 167 CA THR D 24 61.278 88.027 119.620 1.00385.75 ATOM 168 C THR D 24 62.433 88.228 120.582 1.00385.75 ATOM 169 O THR D 24 62.204 88.437 121.770 1.00385.75 ATOM 170 CB THR D 24 60.739 86.597 119.631 1.00385.75 ATOM 171 OG1 THR D 24 59.592 86.520 118.776 1.00385.75 ATOM 172 CG2 THR D 24 60.317 86.185 121.033 1.00385.75 ATOM 173 N GLU D 25 63.681 88.089 120.130 1.00382.60 ATOM 174 CA GLU D 25 64.742 88.386 121.085 1.00382.60 ATOM 175 C GLU D 25 64.759 89.857 121.491 1.00382.60 ATOM 176 O GLU D 25 65.122 90.150 122.632 1.00382.60 ATOM 177 CB GLU D 25 66.102 87.935 120.549 1.00382.60 ATOM 178 CG GLU D 25 66.191 86.440 120.273 1.00382.60 ATOM 179 CD GLU D 25 65.365 85.601 121.237 1.00382.60 ATOM 180 OE1 GLU D 25 65.589 85.693 122.461 1.00382.60 ATOM 181 OE2 GLU D 25 64.492 84.841 120.769 1.00382.60 ATOM 182 N ALA D 26 63.986 90.690 120.813 1.00375.55 ATOM 183 CA ALA D 26 63.815 92.064 121.259 1.00375.55 ATOM 184 C ALA D 26 62.600 92.198 122.152 1.00375.55 ATOM 185 O ALA D 26 62.655 92.877 123.189 1.00375.55 ATOM 186 CB ALA D 26 63.701 93.001 120.057 1.00375.55 ATOM 187 N SER D 27 61.508 91.524 121.820 1.00374.73 ATOM 188 CA SER D 27 60.397 91.633 122.754 1.00374.73 ATOM 189 C SER D 27 60.733 90.928 124.070 1.00374.73 ATOM 190 O SER D 27 60.412 91.439 125.148 1.00374.73 ATOM 191 CB SER D 27 59.113 91.084 122.134 1.00374.73 ATOM 192 OG SER D 27 58.158 90.762 123.130 1.00374.73 ATOM 193 N ASN D 28 61.370 89.751 124.025 1.00375.23 ATOM 194 CA ASN D 28 61.800 89.127 125.273 1.00375.23 ATOM 195 C ASN D 28 62.843 89.971 126.002 1.00375.23 ATOM 196 O ASN D 28 62.905 89.931 127.235 1.00375.23 ATOM 197 CB ASN D 28 62.205 87.655 125.118 1.00375.23 ATOM 198 CG ASN D 28 63.479 87.469 124.371 1.00375.23 ATOM 199 OD1 ASN D 28 64.127 88.426 124.010 1.00375.23 ATOM 200 ND2 ASN D 28 63.849 86.219 124.127 1.00375.23 ATOM 201 N ILE D 29 63.689 90.727 125.282 1.00361.40 ATOM 202 CA ILE D 29 64.553 91.641 126.015 1.00361.40 ATOM 203 C ILE D 29 63.728 92.689 126.751 1.00361.40 ATOM 204 O ILE D 29 64.094 93.116 127.852 1.00361.40 ATOM 205 CB ILE D 29 65.608 92.234 125.063 1.00361.40 ATOM 206 CG1 ILE D 29 66.774 91.249 124.928 1.00361.40 ATOM 207 CG2 ILE D 29 66.056 93.609 125.529 1.00361.40 ATOM 208 CD1 ILE D 29 67.835 91.671 123.961 1.00361.40 ATOM 209 N LEU D 30 62.594 93.101 126.176 1.00366.69 ATOM 210 CA LEU D 30 61.681 93.959 126.940 1.00366.69 ATOM 211 C LEU D 30 61.087 93.238 128.142 1.00366.69 ATOM 212 O LEU D 30 60.868 93.848 129.194 1.00366.69 ATOM 213 CB LEU D 30 60.547 94.497 126.067 1.00366.69 ATOM 214 CG LEU D 30 59.800 95.723 126.620 1.00366.69 ATOM 215 CD1 LEU D 30 60.740 96.737 127.240 1.00366.69 ATOM 216 CD2 LEU D 30 58.934 96.383 125.557 1.00366.69 ATOM 217 N ARG D 31 60.822 91.946 127.997 1.00364.32 ATOM 218 CA ARG D 31 60.349 91.140 129.123 1.00364.32 ATOM 219 C ARG D 31 61.426 90.932 130.182 1.00364.32 ATOM 220 O ARG D 31 61.112 90.552 131.314 1.00364.32 ATOM 221 CB ARG D 31 59.753 89.812 128.655 1.00364.32 ATOM 222 CG ARG D 31 59.065 89.892 127.312 1.00364.32 ATOM 223 CD ARG D 31 58.133 88.727 127.067 1.00364.32 ATOM 224 NE ARG D 31 58.853 87.464 126.928 1.00364.32 ATOM 225 CZ ARG D 31 59.069 86.845 125.771 1.00364.32 ATOM 226 NH1 ARG D 31 58.637 87.378 124.638 1.00364.32 ATOM 227 NH2 ARG D 31 59.729 85.696 125.746 1.00364.32 ATOM 228 N SER D 32 62.680 91.172 129.828 1.00357.08 ATOM 229 CA SER D 32 63.785 91.238 130.773 1.00357.08 ATOM 230 C SER D 32 63.871 92.659 131.306 1.00357.08 ATOM 231 O SER D 32 63.781 93.617 130.532 1.00357.08 ATOM 232 CB SER D 32 65.096 90.882 130.077 1.00357.08 ATOM 233 OG SER D 32 65.515 91.940 129.233 1.00357.08 ATOM 234 N CYS D 33 64.048 92.796 132.620 1.00337.40 ATOM 235 CA CYS D 33 63.909 94.086 133.290 1.00337.40 ATOM 236 C CYS D 33 62.551 94.707 132.956 1.00337.40 ATOM 237 O CYS D 33 62.438 95.746 132.309 1.00337.40 ATOM 238 CB CYS D 33 65.074 95.017 132.923 1.00337.40 ATOM 239 SG CYS D 33 64.954 96.745 133.459 1.00337.40 ATOM 240 N HIS D 34 61.504 93.986 133.355 1.00334.80 ATOM 241 CA HIS D 34 60.155 94.273 132.891 1.00334.80 ATOM 242 C HIS D 34 59.701 95.642 133.384 1.00334.80 ATOM 243 O HIS D 34 59.916 96.003 134.545 1.00334.80 ATOM 244 CB HIS D 34 59.194 93.197 133.401 1.00334.80 ATOM 245 CG HIS D 34 58.054 92.897 132.476 1.00334.80 ATOM 246 ND1 HIS D 34 57.092 91.954 132.768 1.00334.80 ATOM 247 CD2 HIS D 34 57.721 93.411 131.268 1.00334.80 ATOM 248 CE1 HIS D 34 56.215 91.901 131.782 1.00334.80 ATOM 249 NE2 HIS D 34 56.573 92.775 130.860 1.00334.80 ATOM 250 N ALA D 35 59.061 96.399 132.487 1.00321.30 ATOM 251 CA ALA D 35 58.433 97.679 132.824 1.00321.30 ATOM 252 C ALA D 35 59.401 98.629 133.527 1.00321.30 ATOM 253 O ALA D 35 59.003 99.421 134.383 1.00321.30 ATOM 254 CB ALA D 35 57.176 97.465 133.671 1.00321.30 ATOM 255 N CYS D 36 60.681 98.561 133.168 1.00308.22 ATOM 256 CA CYS D 36 61.705 99.371 133.826 1.00308.22 ATOM 257 C CYS D 36 61.608 100.831 133.402 1.00308.22 ATOM 258 O CYS D 36 61.964 101.732 134.160 1.00308.22 ATOM 259 CB CYS D 36 63.109 98.842 133.508 1.00308.22 ATOM 260 SG CYS D 36 63.423 98.439 131.758 1.00308.22 ATOM 261 ZN ZN D 301 65.463 97.376 131.162 1.00311.14 TER