HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6VTX TITLE Crystal structure of human KLF4 zinc finger DNA binding domain in TITLE 2 complex with NANOG DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: Krueppel-like factor 4; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.14 ANGSTORMS DBREF 6VTX A 430 513 UNP O43474 KLF4_HUMAN 396 479 SEQRES 1 A 23 PHE GLN CYS GLN LYS CYS ASP ARG ALA PHE SER ARG SER SEQRES 2 A 23 ASP HIS LEU ALA LEU HIS MET LYS ARG HIS ATOM 1 N PHE A 490 8.428 -20.608 5.928 1.00 33.72 ATOM 2 CA PHE A 490 7.850 -20.869 7.242 1.00 38.41 ATOM 3 C PHE A 490 6.482 -21.518 7.064 1.00 37.80 ATOM 4 O PHE A 490 5.518 -20.855 6.669 1.00 42.46 ATOM 5 CB PHE A 490 7.753 -19.577 8.047 1.00 32.13 ATOM 6 CG PHE A 490 9.053 -18.829 8.142 1.00 28.15 ATOM 7 CD1 PHE A 490 10.035 -19.231 9.032 1.00 32.20 ATOM 8 CD2 PHE A 490 9.298 -17.731 7.333 1.00 36.02 ATOM 9 CE1 PHE A 490 11.236 -18.550 9.118 1.00 39.32 ATOM 10 CE2 PHE A 490 10.495 -17.045 7.414 1.00 32.44 ATOM 11 CZ PHE A 490 11.466 -17.454 8.307 1.00 40.66 ATOM 12 N GLN A 491 6.399 -22.812 7.361 1.00 44.96 ATOM 13 CA GLN A 491 5.178 -23.586 7.197 1.00 52.67 ATOM 14 C GLN A 491 4.567 -23.900 8.557 1.00 49.64 ATOM 15 O GLN A 491 5.275 -24.268 9.498 1.00 53.82 ATOM 16 CB GLN A 491 5.452 -24.887 6.438 1.00 54.61 ATOM 17 CG GLN A 491 5.316 -24.763 4.930 1.00 78.02 ATOM 18 CD GLN A 491 6.182 -25.758 4.178 1.00 92.82 ATOM 19 OE1 GLN A 491 6.028 -25.943 2.971 1.00 89.06 ATOM 20 NE2 GLN A 491 7.099 -26.403 4.890 1.00 79.63 ATOM 21 N CYS A 492 3.247 -23.755 8.649 1.00 51.03 ATOM 22 CA CYS A 492 2.531 -24.056 9.880 1.00 59.54 ATOM 23 C CYS A 492 2.341 -25.562 10.004 1.00 56.24 ATOM 24 O CYS A 492 1.972 -26.228 9.032 1.00 56.37 ATOM 25 CB CYS A 492 1.179 -23.341 9.900 1.00 48.98 ATOM 26 SG CYS A 492 -0.015 -24.011 11.087 1.00 47.03 ATOM 27 N GLN A 493 2.592 -26.098 11.198 1.00 56.62 ATOM 28 CA GLN A 493 2.428 -27.524 11.446 1.00 65.16 ATOM 29 C GLN A 493 1.022 -27.893 11.905 1.00 55.82 ATOM 30 O GLN A 493 0.698 -29.084 11.949 1.00 59.21 ATOM 31 CB GLN A 493 3.445 -28.003 12.490 1.00 64.59 ATOM 32 CG GLN A 493 4.890 -28.058 12.001 1.00 70.83 ATOM 33 CD GLN A 493 5.020 -28.443 10.538 1.00 69.03 ATOM 34 OE1 GLN A 493 4.533 -29.490 10.109 1.00 78.78 ATOM 35 NE2 GLN A 493 5.668 -27.585 9.760 1.00 74.05 ATOM 36 N LYS A 494 0.183 -26.913 12.250 1.00 62.70 ATOM 37 CA LYS A 494 -1.194 -27.219 12.623 1.00 61.30 ATOM 38 C LYS A 494 -2.103 -27.325 11.405 1.00 57.39 ATOM 39 O LYS A 494 -3.098 -28.058 11.443 1.00 80.71 ATOM 40 CB LYS A 494 -1.732 -26.162 13.588 1.00 58.29 ATOM 41 N CYS A 495 -1.785 -26.607 10.329 1.00 61.19 ATOM 42 CA CYS A 495 -2.548 -26.702 9.090 1.00 61.71 ATOM 43 C CYS A 495 -1.608 -26.793 7.893 1.00 66.79 ATOM 44 O CYS A 495 -0.529 -27.385 7.991 1.00 77.41 ATOM 45 CB CYS A 495 -3.494 -25.507 8.947 1.00 50.38 ATOM 46 SG CYS A 495 -2.673 -23.924 8.664 1.00 44.04 ATOM 47 N ASP A 496 -2.006 -26.214 6.760 1.00 51.69 ATOM 48 CA ASP A 496 -1.201 -26.251 5.547 1.00 43.32 ATOM 49 C ASP A 496 -0.739 -24.877 5.085 1.00 47.64 ATOM 50 O ASP A 496 -0.110 -24.778 4.025 1.00 45.20 ATOM 51 CB ASP A 496 -1.977 -26.932 4.412 1.00 48.09 ATOM 52 N ARG A 497 -1.025 -23.821 5.841 1.00 35.86 ATOM 53 CA ARG A 497 -0.644 -22.480 5.423 1.00 44.32 ATOM 54 C ARG A 497 0.861 -22.280 5.552 1.00 41.35 ATOM 55 O ARG A 497 1.493 -22.771 6.492 1.00 42.86 ATOM 56 CB ARG A 497 -1.387 -21.433 6.252 1.00 36.93 ATOM 57 N ALA A 498 1.433 -21.558 4.593 1.00 34.22 ATOM 58 CA ALA A 498 2.844 -21.209 4.598 1.00 27.59 ATOM 59 C ALA A 498 2.993 -19.697 4.501 1.00 35.43 ATOM 60 O ALA A 498 2.169 -19.014 3.885 1.00 39.36 ATOM 61 CB ALA A 498 3.594 -21.884 3.444 1.00 37.44 ATOM 62 N PHE A 499 4.052 -19.177 5.114 1.00 33.11 ATOM 63 CA PHE A 499 4.286 -17.743 5.171 1.00 34.42 ATOM 64 C PHE A 499 5.729 -17.435 4.802 1.00 32.72 ATOM 65 O PHE A 499 6.621 -18.276 4.951 1.00 26.65 ATOM 66 CB PHE A 499 3.962 -17.182 6.564 1.00 36.39 ATOM 67 CG PHE A 499 2.566 -17.493 7.030 1.00 32.16 ATOM 68 CD1 PHE A 499 2.295 -18.662 7.722 1.00 27.69 ATOM 69 CD2 PHE A 499 1.524 -16.620 6.766 1.00 33.68 ATOM 70 CE1 PHE A 499 1.011 -18.952 8.147 1.00 36.96 ATOM 71 CE2 PHE A 499 0.238 -16.904 7.189 1.00 43.79 ATOM 72 CZ PHE A 499 -0.018 -18.072 7.879 1.00 36.08 ATOM 73 N SER A 500 5.948 -16.217 4.312 1.00 28.65 ATOM 74 CA SER A 500 7.271 -15.772 3.899 1.00 30.69 ATOM 75 C SER A 500 8.072 -15.149 5.033 1.00 37.51 ATOM 76 O SER A 500 9.269 -14.895 4.857 1.00 33.03 ATOM 77 CB SER A 500 7.155 -14.764 2.749 1.00 30.62 ATOM 78 OG SER A 500 6.473 -13.593 3.165 1.00 40.24 ATOM 79 N ARG A 501 7.451 -14.899 6.184 1.00 28.57 ATOM 80 CA ARG A 501 8.118 -14.273 7.314 1.00 31.59 ATOM 81 C ARG A 501 7.770 -15.019 8.594 1.00 31.63 ATOM 82 O ARG A 501 6.655 -15.524 8.756 1.00 32.60 ATOM 83 CB ARG A 501 7.732 -12.793 7.441 1.00 25.17 ATOM 84 CG ARG A 501 8.407 -11.896 6.419 1.00 29.36 ATOM 85 CD ARG A 501 7.669 -10.583 6.251 1.00 32.10 ATOM 86 NE ARG A 501 7.442 -9.906 7.522 1.00 25.98 ATOM 87 CZ ARG A 501 7.093 -8.632 7.635 1.00 26.59 ATOM 88 NH1 ARG A 501 6.935 -7.863 6.571 1.00 25.89 ATOM 89 NH2 ARG A 501 6.898 -8.116 8.846 1.00 29.99 ATOM 90 N SER A 502 8.742 -15.082 9.507 1.00 35.85 ATOM 91 CA SER A 502 8.558 -15.853 10.732 1.00 35.51 ATOM 92 C SER A 502 7.554 -15.189 11.666 1.00 30.53 ATOM 93 O SER A 502 6.787 -15.878 12.350 1.00 41.44 ATOM 94 CB SER A 502 9.901 -16.045 11.437 1.00 36.70 ATOM 95 OG SER A 502 10.335 -14.840 12.043 1.00 43.65 ATOM 96 N ASP A 503 7.546 -13.854 11.717 1.00 31.37 ATOM 97 CA ASP A 503 6.603 -13.161 12.588 1.00 38.03 ATOM 98 C ASP A 503 5.168 -13.335 12.110 1.00 35.77 ATOM 99 O ASP A 503 4.241 -13.342 12.928 1.00 30.20 ATOM 100 CB ASP A 503 6.960 -11.677 12.682 1.00 42.17 ATOM 101 CG ASP A 503 7.040 -11.009 11.325 1.00 46.28 ATOM 102 OD1 ASP A 503 7.554 -11.642 10.381 1.00 43.95 ATOM 103 OD2 ASP A 503 6.592 -9.849 11.202 1.00 39.94 ATOM 104 N HIS A 504 4.963 -13.480 10.799 1.00 28.65 ATOM 105 CA HIS A 504 3.624 -13.763 10.295 1.00 34.26 ATOM 106 C HIS A 504 3.183 -15.170 10.675 1.00 30.93 ATOM 107 O HIS A 504 2.002 -15.401 10.960 1.00 33.86 ATOM 108 CB HIS A 504 3.582 -13.574 8.779 1.00 28.60 ATOM 109 CG HIS A 504 3.584 -12.140 8.351 1.00 30.09 ATOM 110 ND1 HIS A 504 3.760 -11.755 7.039 1.00 30.57 ATOM 111 CD2 HIS A 504 3.433 -10.997 9.061 1.00 36.74 ATOM 112 CE1 HIS A 504 3.716 -10.437 6.960 1.00 35.75 ATOM 113 NE2 HIS A 504 3.519 -9.953 8.173 1.00 31.01 ATOM 114 N LEU A 505 4.117 -16.123 10.687 1.00 28.25 ATOM 115 CA LEU A 505 3.784 -17.474 11.126 1.00 30.41 ATOM 116 C LEU A 505 3.513 -17.512 12.625 1.00 29.08 ATOM 117 O LEU A 505 2.601 -18.212 13.079 1.00 26.45 ATOM 118 CB LEU A 505 4.910 -18.440 10.759 1.00 27.65 ATOM 119 CG LEU A 505 4.814 -19.844 11.362 1.00 34.35 ATOM 120 CD1 LEU A 505 3.583 -20.573 10.839 1.00 35.75 ATOM 121 CD2 LEU A 505 6.078 -20.648 11.093 1.00 35.48 ATOM 122 N ALA A 506 4.293 -16.760 13.407 1.00 26.27 ATOM 123 CA ALA A 506 4.094 -16.740 14.853 1.00 32.92 ATOM 124 C ALA A 506 2.734 -16.160 15.216 1.00 34.82 ATOM 125 O ALA A 506 2.034 -16.696 16.082 1.00 43.05 ATOM 126 CB ALA A 506 5.214 -15.947 15.528 1.00 31.00 ATOM 127 N LEU A 507 2.342 -15.062 14.564 1.00 36.23 ATOM 128 CA LEU A 507 1.022 -14.494 14.813 1.00 37.10 ATOM 129 C LEU A 507 -0.085 -15.424 14.333 1.00 30.05 ATOM 130 O LEU A 507 -1.165 -15.461 14.932 1.00 31.31 ATOM 131 CB LEU A 507 0.902 -13.128 14.139 1.00 36.14 ATOM 132 CG LEU A 507 -0.303 -12.280 14.550 1.00 53.99 ATOM 133 CD1 LEU A 507 -0.231 -11.921 16.026 1.00 51.84 ATOM 134 CD2 LEU A 507 -0.393 -11.026 13.694 1.00 62.28 ATOM 135 N HIS A 508 0.165 -16.177 13.259 1.00 31.52 ATOM 136 CA HIS A 508 -0.821 -17.142 12.782 1.00 28.10 ATOM 137 C HIS A 508 -1.013 -18.271 13.786 1.00 34.52 ATOM 138 O HIS A 508 -2.133 -18.763 13.970 1.00 38.57 ATOM 139 CB HIS A 508 -0.391 -17.692 11.421 1.00 27.01 ATOM 140 CG HIS A 508 -1.153 -18.905 10.988 1.00 35.52 ATOM 141 ND1 HIS A 508 -2.403 -18.833 10.412 1.00 33.21 ATOM 142 CD2 HIS A 508 -0.837 -20.221 11.037 1.00 27.96 ATOM 143 CE1 HIS A 508 -2.827 -20.052 10.130 1.00 30.05 ATOM 144 NE2 HIS A 508 -1.895 -20.913 10.498 1.00 37.37 ATOM 145 N MET A 509 0.069 -18.693 14.446 1.00 34.24 ATOM 146 CA MET A 509 -0.038 -19.725 15.472 1.00 37.78 ATOM 147 C MET A 509 -0.781 -19.221 16.703 1.00 38.44 ATOM 148 O MET A 509 -1.510 -19.989 17.342 1.00 40.49 ATOM 149 CB MET A 509 1.354 -20.216 15.872 1.00 43.58 ATOM 150 CG MET A 509 2.076 -21.029 14.813 1.00 33.84 ATOM 151 SD MET A 509 1.156 -22.481 14.271 1.00 63.43 ATOM 152 CE MET A 509 2.482 -23.476 13.590 1.00 51.24 ATOM 153 N LYS A 510 -0.608 -17.945 17.053 1.00 45.63 ATOM 154 CA LYS A 510 -1.234 -17.413 18.260 1.00 46.21 ATOM 155 C LYS A 510 -2.747 -17.322 18.102 1.00 47.34 ATOM 156 O LYS A 510 -3.500 -17.803 18.957 1.00 50.44 ATOM 157 CB LYS A 510 -0.644 -16.043 18.596 1.00 52.43 ATOM 158 CG LYS A 510 0.763 -16.094 19.172 1.00 64.73 ATOM 159 CD LYS A 510 1.248 -14.710 19.568 1.00 77.56 ATOM 160 N ARG A 511 -3.212 -16.703 17.015 1.00 41.51 ATOM 161 CA ARG A 511 -4.637 -16.564 16.739 1.00 54.05 ATOM 162 C ARG A 511 -5.202 -17.748 15.964 1.00 50.40 ATOM 163 O ARG A 511 -6.170 -17.585 15.209 1.00 64.57 ATOM 164 CB ARG A 511 -4.902 -15.259 15.988 1.00 55.26 ATOM 165 N HIS A 512 -4.624 -18.934 16.130 1.00 38.94 ATOM 166 CA HIS A 512 -5.077 -20.122 15.415 1.00 51.78 ATOM 167 C HIS A 512 -6.454 -20.563 15.899 1.00 41.39 ATOM 168 O HIS A 512 -6.577 -21.215 16.936 1.00 66.89 ATOM 169 CB HIS A 512 -4.070 -21.261 15.583 1.00 49.49 ATOM 170 CG HIS A 512 -4.043 -22.219 14.433 1.00 53.53 ATOM 171 ND1 HIS A 512 -5.028 -23.159 14.223 1.00 57.60 ATOM 172 CD2 HIS A 512 -3.146 -22.385 13.431 1.00 40.89 ATOM 173 CE1 HIS A 512 -4.742 -23.861 13.141 1.00 55.92 ATOM 174 NE2 HIS A 512 -3.605 -23.411 12.642 1.00 47.08 ATOM 175 ZN ZN A 602 -2.192 -22.966 10.859 1.00 40.83 TER