HEADER RIBOSOME 31-DEC-69 6XIR TITLE Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome TITLE 2 under Oxidative Stress COMPND MOL_ID: 43; COMPND 2 MOLECULE: RPL41A isoform 1; COMPND 3 CHAIN: n; EXPDTA ELECTRON MICROSCOPY DBREF 6XIR n 1 25 UNP A0A6A5PX A0A6A5PXU0_ 1 25 SEQRES 1 n 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 n 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET n 1 346.854 326.939 390.439 1.00162.68 ATOM 2 CA MET n 1 345.837 326.032 389.850 1.00162.68 ATOM 3 C MET n 1 345.721 326.329 388.354 1.00162.68 ATOM 4 O MET n 1 344.982 327.200 387.906 1.00162.68 ATOM 5 CB MET n 1 344.498 326.147 390.615 1.00162.68 ATOM 6 CG MET n 1 343.857 327.515 390.700 1.00162.68 ATOM 7 SD MET n 1 344.844 328.791 391.503 1.00162.68 ATOM 8 CE MET n 1 344.712 328.304 393.215 1.00162.68 ATOM 9 N ARG n 2 346.512 325.584 387.589 1.00159.59 ATOM 10 CA ARG n 2 346.531 325.723 386.144 1.00159.59 ATOM 11 C ARG n 2 345.440 324.861 385.521 1.00159.59 ATOM 12 O ARG n 2 344.924 323.924 386.135 1.00159.59 ATOM 13 CB ARG n 2 347.897 325.330 385.584 1.00159.59 ATOM 14 N ALA n 3 345.063 325.215 384.295 1.00166.86 ATOM 15 CA ALA n 3 344.153 324.412 383.482 1.00166.86 ATOM 16 C ALA n 3 344.566 324.471 382.019 1.00166.86 ATOM 17 O ALA n 3 343.721 324.492 381.119 1.00166.86 ATOM 18 CB ALA n 3 342.707 324.865 383.650 1.00166.86 ATOM 19 N LYS n 4 345.877 324.503 381.761 1.00159.96 ATOM 20 CA LYS n 4 346.370 324.640 380.395 1.00159.96 ATOM 21 C LYS n 4 346.463 323.320 379.648 1.00159.96 ATOM 22 O LYS n 4 346.551 323.334 378.415 1.00159.96 ATOM 23 CB LYS n 4 347.744 325.299 380.381 1.00159.96 ATOM 24 CG LYS n 4 347.697 326.801 380.521 1.00159.96 ATOM 25 CD LYS n 4 349.080 327.387 380.657 1.00159.96 ATOM 26 CE LYS n 4 349.725 327.524 379.307 1.00159.96 ATOM 27 NZ LYS n 4 351.172 327.847 379.398 1.00159.96 ATOM 28 N TRP n 5 346.443 322.185 380.347 1.00168.09 ATOM 29 CA TRP n 5 346.496 320.895 379.673 1.00168.09 ATOM 30 C TRP n 5 345.275 320.585 378.831 1.00168.09 ATOM 31 O TRP n 5 345.315 319.593 378.102 1.00168.09 ATOM 32 CB TRP n 5 346.670 319.771 380.686 1.00168.09 ATOM 33 CG TRP n 5 348.067 319.329 380.930 1.00168.09 ATOM 34 CD1 TRP n 5 349.232 320.004 380.670 1.00168.09 ATOM 35 CD2 TRP n 5 348.450 318.066 381.455 1.00168.09 ATOM 36 NE1 TRP n 5 350.310 319.234 381.011 1.00168.09 ATOM 37 CE2 TRP n 5 349.855 318.038 381.503 1.00168.09 ATOM 38 CE3 TRP n 5 347.735 316.950 381.897 1.00168.09 ATOM 39 CZ2 TRP n 5 350.554 316.944 381.981 1.00168.09 ATOM 40 CZ3 TRP n 5 348.426 315.873 382.361 1.00168.09 ATOM 41 CH2 TRP n 5 349.821 315.877 382.414 1.00168.09 ATOM 42 N ARG n 6 344.209 321.370 378.918 1.00173.30 ATOM 43 CA ARG n 6 343.039 321.256 378.065 1.00173.30 ATOM 44 C ARG n 6 343.081 322.329 376.987 1.00173.30 ATOM 45 O ARG n 6 342.081 322.991 376.725 1.00173.30 ATOM 46 CB ARG n 6 341.760 321.383 378.886 1.00173.30 ATOM 47 CG ARG n 6 341.583 320.321 379.955 1.00173.30 ATOM 48 CD ARG n 6 341.292 318.955 379.363 1.00173.30 ATOM 49 NE ARG n 6 340.915 318.026 380.418 1.00173.30 ATOM 50 CZ ARG n 6 341.746 317.270 381.125 1.00173.30 ATOM 51 NH1 ARG n 6 343.069 317.273 380.930 1.00173.30 ATOM 52 NH2 ARG n 6 341.210 316.496 382.049 1.00173.30 ATOM 53 N LYS n 7 344.277 322.609 376.447 1.00163.40 ATOM 54 CA LYS n 7 344.466 323.725 375.521 1.00163.40 ATOM 55 C LYS n 7 345.493 323.435 374.423 1.00163.40 ATOM 56 O LYS n 7 346.379 324.264 374.180 1.00163.40 ATOM 57 CB LYS n 7 344.895 324.996 376.261 1.00163.40 ATOM 58 CG LYS n 7 344.209 325.359 377.574 1.00163.40 ATOM 59 CD LYS n 7 342.888 326.056 377.392 1.00163.40 ATOM 60 CE LYS n 7 342.244 326.295 378.752 1.00163.40 ATOM 61 NZ LYS n 7 341.437 327.539 378.805 1.00163.40 ATOM 62 N LYS n 8 345.466 322.256 373.780 1.00162.87 ATOM 63 CA LYS n 8 346.264 322.099 372.553 1.00162.87 ATOM 64 C LYS n 8 345.618 321.351 371.390 1.00162.87 ATOM 65 O LYS n 8 345.785 321.746 370.232 1.00162.87 ATOM 66 CB LYS n 8 347.602 321.446 372.899 1.00162.87 ATOM 67 CG LYS n 8 348.569 321.202 371.732 1.00162.87 ATOM 68 CD LYS n 8 348.857 322.425 370.845 1.00162.87 ATOM 69 CE LYS n 8 349.585 323.539 371.523 1.00162.87 ATOM 70 NZ LYS n 8 350.988 323.173 371.773 1.00162.87 ATOM 71 N ARG n 9 344.878 320.286 371.672 1.00173.25 ATOM 72 CA ARG n 9 344.731 319.179 370.730 1.00173.25 ATOM 73 C ARG n 9 343.337 319.072 370.124 1.00173.25 ATOM 74 O ARG n 9 343.176 319.107 368.903 1.00173.25 ATOM 75 CB ARG n 9 345.068 317.861 371.445 1.00173.25 ATOM 76 CG ARG n 9 344.998 316.629 370.578 1.00173.25 ATOM 77 CD ARG n 9 345.519 315.396 371.255 1.00173.25 ATOM 78 NE ARG n 9 346.946 315.481 371.570 1.00173.25 ATOM 79 CZ ARG n 9 347.831 314.489 371.494 1.00173.25 ATOM 80 NH1 ARG n 9 347.510 313.270 371.082 1.00173.25 ATOM 81 NH2 ARG n 9 349.082 314.733 371.821 1.00173.25 ATOM 82 N THR n 10 342.328 318.907 370.970 1.00166.69 ATOM 83 CA THR n 10 341.159 318.121 370.612 1.00166.69 ATOM 84 C THR n 10 339.930 318.986 370.348 1.00166.69 ATOM 85 O THR n 10 338.800 318.543 370.582 1.00166.69 ATOM 86 CB THR n 10 340.917 317.100 371.725 1.00166.69 ATOM 87 OG1 THR n 10 342.180 316.551 372.120 1.00166.69 ATOM 88 CG2 THR n 10 340.055 315.938 371.256 1.00166.69 ATOM 89 N ARG n 11 340.132 320.225 369.879 1.00167.31 ATOM 90 CA ARG n 11 339.053 321.063 369.362 1.00167.31 ATOM 91 C ARG n 11 339.278 321.459 367.911 1.00167.31 ATOM 92 O ARG n 11 338.405 321.214 367.070 1.00167.31 ATOM 93 CB ARG n 11 338.892 322.318 370.246 1.00167.31 ATOM 94 CG ARG n 11 337.569 323.085 370.038 1.00167.31 ATOM 95 CD ARG n 11 337.692 324.391 369.229 1.00167.31 ATOM 96 NE ARG n 11 336.363 324.918 368.916 1.00167.31 ATOM 97 CZ ARG n 11 336.090 325.903 368.058 1.00167.31 ATOM 98 NH1 ARG n 11 337.048 326.543 367.389 1.00167.31 ATOM 99 NH2 ARG n 11 334.828 326.256 367.869 1.00167.31 ATOM 100 N ARG n 12 340.447 322.006 367.582 1.00166.57 ATOM 101 CA ARG n 12 340.796 322.392 366.219 1.00166.57 ATOM 102 C ARG n 12 342.303 322.295 366.090 1.00166.57 ATOM 103 O ARG n 12 343.032 322.842 366.920 1.00166.57 ATOM 104 CB ARG n 12 340.345 323.818 365.884 1.00166.57 ATOM 105 CG ARG n 12 338.846 324.072 365.655 1.00166.57 ATOM 106 CD ARG n 12 338.387 323.798 364.218 1.00166.57 ATOM 107 NE ARG n 12 336.926 323.788 364.143 1.00166.57 ATOM 108 CZ ARG n 12 336.144 324.865 364.248 1.00166.57 ATOM 109 NH1 ARG n 12 334.827 324.730 364.175 1.00166.57 ATOM 110 NH2 ARG n 12 336.651 326.078 364.443 1.00166.57 ATOM 111 N LEU n 13 342.755 321.585 365.064 1.00170.32 ATOM 112 CA LEU n 13 344.139 321.636 364.615 1.00170.32 ATOM 113 C LEU n 13 344.243 321.884 363.123 1.00170.32 ATOM 114 O LEU n 13 345.357 321.891 362.593 1.00170.32 ATOM 115 CB LEU n 13 344.884 320.341 364.978 1.00170.32 ATOM 116 CG LEU n 13 344.666 319.810 366.403 1.00170.32 ATOM 117 CD1 LEU n 13 345.311 318.466 366.585 1.00170.32 ATOM 118 CD2 LEU n 13 345.174 320.779 367.457 1.00170.32 ATOM 119 N LYS n 14 343.124 322.061 362.428 1.00167.55 ATOM 120 CA LYS n 14 343.097 322.707 361.128 1.00167.55 ATOM 121 C LYS n 14 341.966 323.712 361.146 1.00167.55 ATOM 122 O LYS n 14 340.797 323.335 361.275 1.00167.55 ATOM 123 CB LYS n 14 342.900 321.714 359.996 1.00167.55 ATOM 124 CG LYS n 14 343.256 322.319 358.634 1.00167.55 ATOM 125 CD LYS n 14 343.537 321.310 357.538 1.00167.55 ATOM 126 CE LYS n 14 344.722 320.419 357.888 1.00167.55 ATOM 127 NZ LYS n 14 345.295 319.672 356.770 1.00167.55 ATOM 128 N ARG n 15 342.315 324.986 360.992 1.00166.46 ATOM 129 CA ARG n 15 341.373 326.087 361.119 1.00166.46 ATOM 130 C ARG n 15 340.664 326.400 359.807 1.00166.46 ATOM 131 O ARG n 15 340.197 327.530 359.609 1.00166.46 ATOM 132 CB ARG n 15 342.098 327.324 361.659 1.00166.46 ATOM 133 CG ARG n 15 342.552 327.200 363.118 1.00166.46 ATOM 134 CD ARG n 15 343.976 326.667 363.266 1.00166.46 ATOM 135 NE ARG n 15 344.982 327.605 362.767 1.00166.46 ATOM 136 CZ ARG n 15 345.527 328.601 363.465 1.00166.46 ATOM 137 NH1 ARG n 15 345.176 328.855 364.722 1.00166.46 ATOM 138 NH2 ARG n 15 346.436 329.371 362.887 1.00166.46 ATOM 139 N LYS n 16 340.562 325.427 358.901 1.00159.81 ATOM 140 CA LYS n 16 339.716 325.577 357.730 1.00159.81 ATOM 141 C LYS n 16 338.263 325.241 358.018 1.00159.81 ATOM 142 O LYS n 16 337.399 325.647 357.250 1.00159.81 ATOM 143 CB LYS n 16 340.237 324.712 356.578 1.00159.81 ATOM 144 CG LYS n 16 341.373 325.368 355.776 1.00159.81 ATOM 145 CD LYS n 16 340.905 326.560 354.912 1.00159.81 ATOM 146 CE LYS n 16 341.881 327.743 354.963 1.00159.81 ATOM 147 NZ LYS n 16 341.305 328.981 354.363 1.00159.81 ATOM 148 N ARG n 17 337.967 324.527 359.107 1.00163.99 ATOM 149 CA ARG n 17 336.595 324.499 359.613 1.00163.99 ATOM 150 C ARG n 17 336.211 325.837 360.234 1.00163.99 ATOM 151 O ARG n 17 335.022 326.119 360.416 1.00163.99 ATOM 152 CB ARG n 17 336.439 323.376 360.636 1.00163.99 ATOM 153 CG ARG n 17 334.999 323.005 360.964 1.00163.99 ATOM 154 CD ARG n 17 334.906 321.552 361.416 1.00163.99 ATOM 155 NE ARG n 17 333.615 321.214 362.022 1.00163.99 ATOM 156 CZ ARG n 17 332.528 320.805 361.365 1.00163.99 ATOM 157 NH1 ARG n 17 332.515 320.672 360.042 1.00163.99 ATOM 158 NH2 ARG n 17 331.425 320.529 362.048 1.00163.99 ATOM 159 N ARG n 18 337.206 326.652 360.589 1.00162.91 ATOM 160 CA ARG n 18 336.996 328.040 360.976 1.00162.91 ATOM 161 C ARG n 18 337.032 328.976 359.773 1.00162.91 ATOM 162 O ARG n 18 336.475 330.078 359.833 1.00162.91 ATOM 163 CB ARG n 18 338.051 328.404 362.017 1.00162.91 ATOM 164 CG ARG n 18 338.102 329.825 362.469 1.00162.91 ATOM 165 CD ARG n 18 339.367 330.520 362.002 1.00162.91 ATOM 166 NE ARG n 18 339.318 331.950 362.299 1.00162.91 ATOM 167 CZ ARG n 18 338.770 332.874 361.513 1.00162.91 ATOM 168 NH1 ARG n 18 338.210 332.564 360.345 1.00162.91 ATOM 169 NH2 ARG n 18 338.772 334.140 361.904 1.00162.91 ATOM 170 N LYS n 19 337.660 328.538 358.681 1.00158.09 ATOM 171 CA LYS n 19 337.706 329.241 357.406 1.00158.09 ATOM 172 C LYS n 19 337.014 328.362 356.372 1.00158.09 ATOM 173 O LYS n 19 337.585 328.038 355.328 1.00158.09 ATOM 174 CB LYS n 19 339.148 329.544 357.016 1.00158.09 ATOM 175 CG LYS n 19 339.899 330.389 358.024 1.00158.09 ATOM 176 CD LYS n 19 341.330 330.627 357.609 1.00158.09 ATOM 177 CE LYS n 19 341.440 331.611 356.464 1.00158.09 ATOM 178 NZ LYS n 19 342.838 331.831 356.099 1.00158.09 ATOM 179 N VAL n 20 335.797 327.926 356.695 1.00164.41 ATOM 180 CA VAL n 20 335.263 326.684 356.147 1.00164.41 ATOM 181 C VAL n 20 334.760 326.823 354.717 1.00164.41 ATOM 182 O VAL n 20 334.699 325.822 353.992 1.00164.41 ATOM 183 CB VAL n 20 334.178 326.133 357.097 1.00164.41 ATOM 184 CG1 VAL n 20 332.992 327.115 357.285 1.00164.41 ATOM 185 CG2 VAL n 20 333.722 324.753 356.657 1.00164.41 ATOM 186 N ARG n 21 334.405 328.027 354.276 1.00168.59 ATOM 187 CA ARG n 21 334.015 328.240 352.879 1.00168.59 ATOM 188 C ARG n 21 335.223 328.664 352.048 1.00168.59 ATOM 189 O ARG n 21 335.186 329.646 351.308 1.00168.59 ATOM 190 CB ARG n 21 332.889 329.266 352.784 1.00168.59 ATOM 191 CG ARG n 21 331.756 329.124 353.810 1.00168.59 ATOM 192 CD ARG n 21 330.944 327.827 353.686 1.00168.59 ATOM 193 NE ARG n 21 330.462 327.355 354.985 1.00168.59 ATOM 194 CZ ARG n 21 329.564 326.387 355.169 1.00168.59 ATOM 195 NH1 ARG n 21 329.218 326.052 356.403 1.00168.59 ATOM 196 NH2 ARG n 21 329.002 325.751 354.144 1.00168.59 ATOM 197 N ALA n 22 336.310 327.897 352.179 1.00156.36 ATOM 198 CA ALA n 22 337.581 328.153 351.513 1.00156.36 ATOM 199 C ALA n 22 337.988 327.030 350.574 1.00156.36 ATOM 200 O ALA n 22 338.235 327.280 349.387 1.00156.36 ATOM 201 CB ALA n 22 338.675 328.363 352.569 1.00156.36 ATOM 202 N ARG n 23 338.052 325.794 351.076 1.00138.74 ATOM 203 CA ARG n 23 338.573 324.642 350.349 1.00138.74 ATOM 204 C ARG n 23 337.628 323.455 350.331 1.00138.74 ATOM 205 O ARG n 23 337.569 322.749 349.323 1.00138.74 ATOM 206 CB ARG n 23 339.908 324.188 350.967 1.00138.74 ATOM 207 CG ARG n 23 341.042 325.227 350.919 1.00138.74 ATOM 208 CD ARG n 23 342.058 325.006 349.789 1.00138.74 ATOM 209 NE ARG n 23 341.688 325.637 348.520 1.00138.74 ATOM 210 CZ ARG n 23 341.630 326.952 348.297 1.00138.74 ATOM 211 NH1 ARG n 23 341.290 327.391 347.096 1.00138.74 ATOM 212 NH2 ARG n 23 341.900 327.836 349.252 1.00138.74 ATOM 213 N SER n 24 336.893 323.214 351.413 1.00133.90 ATOM 214 CA SER n 24 336.021 322.052 351.504 1.00133.90 ATOM 215 C SER n 24 334.725 322.296 350.743 1.00133.90 ATOM 216 O SER n 24 334.054 323.314 350.939 1.00133.90 ATOM 217 CB SER n 24 335.714 321.729 352.967 1.00133.90 ATOM 218 OG SER n 24 336.799 321.063 353.586 1.00133.90 ATOM 219 N LYS n 25 334.378 321.353 349.869 1.00 84.69 ATOM 220 CA LYS n 25 333.132 321.409 349.113 1.00 84.69 ATOM 221 C LYS n 25 332.010 320.723 349.885 1.00 84.69 ATOM 222 O LYS n 25 332.233 319.725 350.571 1.00 84.69 ATOM 223 CB LYS n 25 333.310 320.754 347.740 1.00 84.69 ATOM 224 CG LYS n 25 332.195 321.064 346.733 1.00 84.69 ATOM 225 CD LYS n 25 332.226 322.505 346.245 1.00 84.69 ATOM 226 CE LYS n 25 332.118 322.579 344.723 1.00 84.69 ATOM 227 NZ LYS n 25 332.081 323.985 344.215 1.00 84.69 TER