HEADER TRANSCRIPTION, TRANSFERASE/DNA 31-DEC-69 6XL5 TITLE Cryo-EM structure of EcmrR-RNAP-promoter open complex (EcmrR-RPo) COMPND MOL_ID: 5; COMPND 2 MOLECULE: RNA polymerase sigma factor RpoD; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 6XL5 F 1 613 UNP P00579 RPOD_ECOLI 1 613 SEQRES 1 F 32 ARG THR ILE ARG ILE PRO VAL HIS MET ILE GLU THR ILE SEQRES 2 F 32 ASN LYS LEU ASN ARG ILE SER ARG GLN MET LEU GLN GLU SEQRES 3 F 32 MET GLY ARG GLU PRO THR ATOM 1 N ARG F 448 147.210 154.270 152.089 1.00 42.11 ATOM 2 CA ARG F 448 148.434 153.706 152.633 1.00 42.11 ATOM 3 C ARG F 448 149.564 153.797 151.623 1.00 42.11 ATOM 4 O ARG F 448 149.330 153.740 150.417 1.00 42.11 ATOM 5 CB ARG F 448 148.226 152.249 153.026 1.00 42.11 ATOM 6 CG ARG F 448 147.519 152.054 154.325 1.00 42.11 ATOM 7 CD ARG F 448 146.962 150.669 154.390 1.00 42.11 ATOM 8 NE ARG F 448 146.761 150.216 155.757 1.00 42.11 ATOM 9 CZ ARG F 448 147.705 149.668 156.511 1.00 42.11 ATOM 10 NH1 ARG F 448 148.929 149.505 156.040 1.00 42.11 ATOM 11 NH2 ARG F 448 147.422 149.284 157.741 1.00 42.11 ATOM 12 N THR F 449 150.789 153.937 152.131 1.00 39.01 ATOM 13 CA THR F 449 151.969 153.916 151.275 1.00 39.01 ATOM 14 C THR F 449 152.132 152.557 150.626 1.00 39.01 ATOM 15 O THR F 449 152.279 152.443 149.407 1.00 39.01 ATOM 16 CB THR F 449 153.216 154.260 152.086 1.00 39.01 ATOM 17 OG1 THR F 449 152.934 155.360 152.951 1.00 39.01 ATOM 18 CG2 THR F 449 154.360 154.629 151.182 1.00 39.01 ATOM 19 N ILE F 450 152.117 151.511 151.439 1.00 38.54 ATOM 20 CA ILE F 450 152.149 150.142 150.960 1.00 38.54 ATOM 21 C ILE F 450 150.698 149.691 150.878 1.00 38.54 ATOM 22 O ILE F 450 150.040 149.494 151.892 1.00 38.54 ATOM 23 CB ILE F 450 152.989 149.254 151.875 1.00 38.54 ATOM 24 CG1 ILE F 450 154.405 149.803 151.963 1.00 38.54 ATOM 25 CG2 ILE F 450 153.046 147.885 151.345 1.00 38.54 ATOM 26 CD1 ILE F 450 155.219 149.183 153.011 1.00 38.54 ATOM 27 N ARG F 451 150.194 149.549 149.658 1.00 39.16 ATOM 28 CA ARG F 451 148.777 149.296 149.459 1.00 39.16 ATOM 29 C ARG F 451 148.409 147.883 149.870 1.00 39.16 ATOM 30 O ARG F 451 149.023 146.910 149.435 1.00 39.16 ATOM 31 CB ARG F 451 148.394 149.512 148.002 1.00 39.16 ATOM 32 CG ARG F 451 146.916 149.400 147.766 1.00 39.16 ATOM 33 CD ARG F 451 146.578 149.296 146.317 1.00 39.16 ATOM 34 NE ARG F 451 147.226 148.153 145.702 1.00 39.16 ATOM 35 CZ ARG F 451 146.629 146.998 145.456 1.00 39.16 ATOM 36 NH1 ARG F 451 145.361 146.825 145.766 1.00 39.16 ATOM 37 NH2 ARG F 451 147.303 146.019 144.893 1.00 39.16 ATOM 38 N ILE F 452 147.386 147.782 150.708 1.00 41.93 ATOM 39 CA ILE F 452 146.819 146.512 151.137 1.00 41.93 ATOM 40 C ILE F 452 145.583 146.280 150.279 1.00 41.93 ATOM 41 O ILE F 452 144.837 147.231 150.022 1.00 41.93 ATOM 42 CB ILE F 452 146.470 146.539 152.632 1.00 41.93 ATOM 43 CG1 ILE F 452 147.541 147.258 153.434 1.00 41.93 ATOM 44 CG2 ILE F 452 146.348 145.172 153.164 1.00 41.93 ATOM 45 CD1 ILE F 452 148.841 146.560 153.495 1.00 41.93 ATOM 46 N PRO F 453 145.334 145.068 149.796 1.00 42.85 ATOM 47 CA PRO F 453 144.119 144.827 149.021 1.00 42.85 ATOM 48 C PRO F 453 142.873 144.920 149.882 1.00 42.85 ATOM 49 O PRO F 453 142.935 144.894 151.107 1.00 42.85 ATOM 50 CB PRO F 453 144.322 143.410 148.488 1.00 42.85 ATOM 51 CG PRO F 453 145.742 143.221 148.502 1.00 42.85 ATOM 52 CD PRO F 453 146.251 143.938 149.687 1.00 42.85 ATOM 53 N VAL F 454 141.728 145.015 149.212 1.00 45.38 ATOM 54 CA VAL F 454 140.465 145.262 149.895 1.00 45.38 ATOM 55 C VAL F 454 140.085 144.095 150.794 1.00 45.38 ATOM 56 O VAL F 454 139.529 144.297 151.879 1.00 45.38 ATOM 57 CB VAL F 454 139.382 145.579 148.847 1.00 45.38 ATOM 58 CG1 VAL F 454 138.005 145.405 149.402 1.00 45.38 ATOM 59 CG2 VAL F 454 139.550 146.980 148.351 1.00 45.38 ATOM 60 N HIS F 455 140.409 142.866 150.391 1.00 47.18 ATOM 61 CA HIS F 455 140.104 141.717 151.235 1.00 47.18 ATOM 62 C HIS F 455 140.910 141.739 152.527 1.00 47.18 ATOM 63 O HIS F 455 140.369 141.457 153.603 1.00 47.18 ATOM 64 CB HIS F 455 140.328 140.418 150.454 1.00 47.18 ATOM 65 CG HIS F 455 141.763 140.014 150.309 1.00 47.18 ATOM 66 ND1 HIS F 455 142.335 139.023 151.074 1.00 47.18 ATOM 67 CD2 HIS F 455 142.732 140.444 149.469 1.00 47.18 ATOM 68 CE1 HIS F 455 143.600 138.876 150.727 1.00 47.18 ATOM 69 NE2 HIS F 455 143.866 139.728 149.757 1.00 47.18 ATOM 70 N MET F 456 142.171 142.141 152.463 1.00 48.69 ATOM 71 CA MET F 456 142.967 142.231 153.671 1.00 48.69 ATOM 72 C MET F 456 142.657 143.484 154.461 1.00 48.69 ATOM 73 O MET F 456 142.770 143.470 155.685 1.00 48.69 ATOM 74 CB MET F 456 144.452 142.168 153.325 1.00 48.69 ATOM 75 CG MET F 456 145.376 141.951 154.505 1.00 48.69 ATOM 76 SD MET F 456 145.003 140.515 155.517 1.00 48.69 ATOM 77 CE MET F 456 145.081 139.215 154.305 1.00 48.69 ATOM 78 N ILE F 457 142.238 144.559 153.795 1.00 48.84 ATOM 79 CA ILE F 457 141.760 145.743 154.501 1.00 48.84 ATOM 80 C ILE F 457 140.544 145.392 155.338 1.00 48.84 ATOM 81 O ILE F 457 140.420 145.809 156.493 1.00 48.84 ATOM 82 CB ILE F 457 141.448 146.867 153.494 1.00 48.84 ATOM 83 CG1 ILE F 457 142.728 147.532 152.999 1.00 48.84 ATOM 84 CG2 ILE F 457 140.527 147.896 154.089 1.00 48.84 ATOM 85 CD1 ILE F 457 143.504 148.208 154.066 1.00 48.84 ATOM 86 N GLU F 458 139.649 144.582 154.784 1.00 51.40 ATOM 87 CA GLU F 458 138.456 144.187 155.517 1.00 51.40 ATOM 88 C GLU F 458 138.779 143.198 156.624 1.00 51.40 ATOM 89 O GLU F 458 138.160 143.240 157.689 1.00 51.40 ATOM 90 CB GLU F 458 137.429 143.611 154.556 1.00 51.40 ATOM 91 CG GLU F 458 136.742 144.681 153.739 1.00 51.40 ATOM 92 CD GLU F 458 135.897 144.115 152.627 1.00 51.40 ATOM 93 OE1 GLU F 458 135.799 142.875 152.526 1.00 51.40 ATOM 94 OE2 GLU F 458 135.333 144.911 151.849 1.00 51.40 ATOM 95 N THR F 459 139.747 142.308 156.404 1.00 52.67 ATOM 96 CA THR F 459 140.192 141.437 157.489 1.00 52.67 ATOM 97 C THR F 459 140.805 142.238 158.632 1.00 52.67 ATOM 98 O THR F 459 140.561 141.944 159.805 1.00 52.67 ATOM 99 CB THR F 459 141.183 140.407 156.963 1.00 52.67 ATOM 100 OG1 THR F 459 140.534 139.594 155.986 1.00 52.67 ATOM 101 CG2 THR F 459 141.661 139.521 158.071 1.00 52.67 ATOM 102 N ILE F 460 141.580 143.272 158.311 1.00 53.45 ATOM 103 CA ILE F 460 142.155 144.129 159.341 1.00 53.45 ATOM 104 C ILE F 460 141.064 144.875 160.097 1.00 53.45 ATOM 105 O ILE F 460 141.102 144.959 161.326 1.00 53.45 ATOM 106 CB ILE F 460 143.170 145.101 158.717 1.00 53.45 ATOM 107 CG1 ILE F 460 144.408 144.360 158.240 1.00 53.45 ATOM 108 CG2 ILE F 460 143.585 146.146 159.706 1.00 53.45 ATOM 109 CD1 ILE F 460 145.251 145.169 157.321 1.00 53.45 ATOM 110 N ASN F 461 140.074 145.422 159.385 1.00 56.44 ATOM 111 CA ASN F 461 138.981 146.133 160.048 1.00 56.44 ATOM 112 C ASN F 461 138.186 145.211 160.965 1.00 56.44 ATOM 113 O ASN F 461 137.810 145.594 162.083 1.00 56.44 ATOM 114 CB ASN F 461 138.047 146.752 159.010 1.00 56.44 ATOM 115 CG ASN F 461 138.660 147.936 158.293 1.00 56.44 ATOM 116 OD1 ASN F 461 139.750 148.389 158.628 1.00 56.44 ATOM 117 ND2 ASN F 461 137.953 148.443 157.295 1.00 56.44 ATOM 118 N LYS F 462 137.912 143.996 160.504 1.00 59.74 ATOM 119 CA LYS F 462 137.171 143.036 161.308 1.00 59.74 ATOM 120 C LYS F 462 137.962 142.622 162.539 1.00 59.74 ATOM 121 O LYS F 462 137.406 142.524 163.638 1.00 59.74 ATOM 122 CB LYS F 462 136.826 141.833 160.442 1.00 59.74 ATOM 123 CG LYS F 462 136.315 140.647 161.178 1.00 59.74 ATOM 124 CD LYS F 462 136.075 139.519 160.211 1.00 59.74 ATOM 125 CE LYS F 462 135.352 138.377 160.877 1.00 59.74 ATOM 126 NZ LYS F 462 135.017 137.324 159.891 1.00 59.74 ATOM 127 N LEU F 463 139.264 142.396 162.373 1.00 60.52 ATOM 128 CA LEU F 463 140.136 142.101 163.501 1.00 60.52 ATOM 129 C LEU F 463 140.157 143.243 164.500 1.00 60.52 ATOM 130 O LEU F 463 140.185 143.016 165.711 1.00 60.52 ATOM 131 CB LEU F 463 141.543 141.831 162.987 1.00 60.52 ATOM 132 CG LEU F 463 142.642 141.507 163.985 1.00 60.52 ATOM 133 CD1 LEU F 463 142.364 140.198 164.619 1.00 60.52 ATOM 134 CD2 LEU F 463 143.964 141.467 163.288 1.00 60.52 ATOM 135 N ASN F 464 140.136 144.479 164.011 1.00 61.11 ATOM 136 CA ASN F 464 140.174 145.627 164.905 1.00 61.11 ATOM 137 C ASN F 464 138.899 145.742 165.725 1.00 61.11 ATOM 138 O ASN F 464 138.958 146.029 166.923 1.00 61.11 ATOM 139 CB ASN F 464 140.407 146.903 164.110 1.00 61.11 ATOM 140 CG ASN F 464 141.821 147.023 163.625 1.00 61.11 ATOM 141 OD1 ASN F 464 142.671 146.204 163.954 1.00 61.11 ATOM 142 ND2 ASN F 464 142.086 148.046 162.832 1.00 61.11 ATOM 143 N ARG F 465 137.734 145.522 165.116 1.00 63.60 ATOM 144 CA ARG F 465 136.533 145.639 165.938 1.00 63.60 ATOM 145 C ARG F 465 136.352 144.431 166.855 1.00 63.60 ATOM 146 O ARG F 465 135.789 144.570 167.949 1.00 63.60 ATOM 147 CB ARG F 465 135.287 145.874 165.092 1.00 63.60 ATOM 148 CG ARG F 465 134.820 144.730 164.269 1.00 63.60 ATOM 149 CD ARG F 465 133.530 145.099 163.574 1.00 63.60 ATOM 150 NE ARG F 465 133.046 143.998 162.757 1.00 63.60 ATOM 151 CZ ARG F 465 133.347 143.843 161.474 1.00 63.60 ATOM 152 NH1 ARG F 465 132.876 142.805 160.803 1.00 63.60 ATOM 153 NH2 ARG F 465 134.107 144.737 160.859 1.00 63.60 ATOM 154 N ILE F 466 136.854 143.258 166.468 1.00 65.69 ATOM 155 CA ILE F 466 136.854 142.140 167.405 1.00 65.69 ATOM 156 C ILE F 466 137.783 142.433 168.578 1.00 65.69 ATOM 157 O ILE F 466 137.471 142.112 169.729 1.00 65.69 ATOM 158 CB ILE F 466 137.233 140.834 166.685 1.00 65.69 ATOM 159 CG1 ILE F 466 136.134 140.420 165.716 1.00 65.69 ATOM 160 CG2 ILE F 466 137.463 139.714 167.666 1.00 65.69 ATOM 161 CD1 ILE F 466 134.844 140.106 166.379 1.00 65.69 ATOM 162 N SER F 467 138.924 143.075 168.315 1.00 66.66 ATOM 163 CA SER F 467 139.827 143.458 169.394 1.00 66.66 ATOM 164 C SER F 467 139.197 144.499 170.302 1.00 66.66 ATOM 165 O SER F 467 139.408 144.469 171.514 1.00 66.66 ATOM 166 CB SER F 467 141.136 143.992 168.829 1.00 66.66 ATOM 167 OG SER F 467 141.851 142.985 168.149 1.00 66.66 ATOM 168 N ARG F 468 138.435 145.433 169.736 1.00 67.18 ATOM 169 CA ARG F 468 137.721 146.410 170.553 1.00 67.18 ATOM 170 C ARG F 468 136.720 145.735 171.478 1.00 67.18 ATOM 171 O ARG F 468 136.647 146.052 172.670 1.00 67.18 ATOM 172 CB ARG F 468 137.007 147.410 169.658 1.00 67.18 ATOM 173 CG ARG F 468 137.727 148.706 169.483 1.00 67.18 ATOM 174 CD ARG F 468 136.870 149.658 168.683 1.00 67.18 ATOM 175 NE ARG F 468 137.178 149.581 167.263 1.00 67.18 ATOM 176 CZ ARG F 468 136.569 150.303 166.335 1.00 67.18 ATOM 177 NH1 ARG F 468 135.619 151.160 166.681 1.00 67.18 ATOM 178 NH2 ARG F 468 136.909 150.174 165.062 1.00 67.18 ATOM 179 N GLN F 469 135.931 144.803 170.941 1.00 69.30 ATOM 180 CA GLN F 469 134.963 144.096 171.774 1.00 69.30 ATOM 181 C GLN F 469 135.646 143.271 172.857 1.00 69.30 ATOM 182 O GLN F 469 135.196 143.249 174.006 1.00 69.30 ATOM 183 CB GLN F 469 134.080 143.202 170.913 1.00 69.30 ATOM 184 CG GLN F 469 133.188 143.951 169.961 1.00 69.30 ATOM 185 CD GLN F 469 132.526 143.029 168.966 1.00 69.30 ATOM 186 OE1 GLN F 469 132.597 141.807 169.096 1.00 69.30 ATOM 187 NE2 GLN F 469 131.885 143.607 167.958 1.00 69.30 ATOM 188 N MET F 470 136.733 142.585 172.517 1.00 71.28 ATOM 189 CA MET F 470 137.427 141.778 173.509 1.00 71.28 ATOM 190 C MET F 470 138.200 142.613 174.514 1.00 71.28 ATOM 191 O MET F 470 138.468 142.137 175.616 1.00 71.28 ATOM 192 CB MET F 470 138.380 140.803 172.828 1.00 71.28 ATOM 193 CG MET F 470 137.690 139.768 171.998 1.00 71.28 ATOM 194 SD MET F 470 138.798 138.475 171.435 1.00 71.28 ATOM 195 CE MET F 470 139.259 137.732 172.990 1.00 71.28 ATOM 196 N LEU F 471 138.581 143.830 174.158 1.00 69.46 ATOM 197 CA LEU F 471 139.224 144.719 175.109 1.00 69.46 ATOM 198 C LEU F 471 138.214 145.334 176.058 1.00 69.46 ATOM 199 O LEU F 471 138.532 145.576 177.224 1.00 69.46 ATOM 200 CB LEU F 471 139.981 145.806 174.355 1.00 69.46 ATOM 201 CG LEU F 471 140.529 146.995 175.121 1.00 69.46 ATOM 202 CD1 LEU F 471 141.844 146.630 175.748 1.00 69.46 ATOM 203 CD2 LEU F 471 140.688 148.160 174.179 1.00 69.46 ATOM 204 N GLN F 472 136.996 145.579 175.587 1.00 70.36 ATOM 205 CA GLN F 472 135.965 146.097 176.475 1.00 70.36 ATOM 206 C GLN F 472 135.444 145.016 177.407 1.00 70.36 ATOM 207 O GLN F 472 135.285 145.247 178.609 1.00 70.36 ATOM 208 CB GLN F 472 134.828 146.695 175.662 1.00 70.36 ATOM 209 CG GLN F 472 135.077 148.121 175.285 1.00 70.36 ATOM 210 CD GLN F 472 135.101 149.019 176.486 1.00 70.36 ATOM 211 OE1 GLN F 472 134.345 148.824 177.431 1.00 70.36 ATOM 212 NE2 GLN F 472 135.975 150.009 176.464 1.00 70.36 ATOM 213 N GLU F 473 135.163 143.831 176.878 1.00 72.90 ATOM 214 CA GLU F 473 134.559 142.793 177.698 1.00 72.90 ATOM 215 C GLU F 473 135.550 142.092 178.613 1.00 72.90 ATOM 216 O GLU F 473 135.122 141.340 179.492 1.00 72.90 ATOM 217 CB GLU F 473 133.864 141.760 176.813 1.00 72.90 ATOM 218 CG GLU F 473 134.773 140.656 176.323 1.00 72.90 ATOM 219 CD GLU F 473 134.188 139.889 175.165 1.00 72.90 ATOM 220 OE1 GLU F 473 133.262 140.410 174.511 1.00 72.90 ATOM 221 OE2 GLU F 473 134.660 138.765 174.904 1.00 72.90 ATOM 222 N MET F 474 136.851 142.300 178.434 1.00 71.97 ATOM 223 CA MET F 474 137.847 141.691 179.299 1.00 71.97 ATOM 224 C MET F 474 138.730 142.694 180.018 1.00 71.97 ATOM 225 O MET F 474 139.521 142.283 180.872 1.00 71.97 ATOM 226 CB MET F 474 138.752 140.735 178.508 1.00 71.97 ATOM 227 CG MET F 474 138.017 139.693 177.701 1.00 71.97 ATOM 228 SD MET F 474 139.132 138.548 176.866 1.00 71.97 ATOM 229 CE MET F 474 140.456 139.645 176.377 1.00 71.97 ATOM 230 N GLY F 475 138.632 143.980 179.696 1.00 68.86 ATOM 231 CA GLY F 475 139.486 144.975 180.317 1.00 68.86 ATOM 232 C GLY F 475 140.956 144.768 180.049 1.00 68.86 ATOM 233 O GLY F 475 141.794 145.189 180.849 1.00 68.86 ATOM 234 N ARG F 476 141.291 144.127 178.937 1.00 71.40 ATOM 235 CA ARG F 476 142.647 143.675 178.681 1.00 71.40 ATOM 236 C ARG F 476 142.782 143.395 177.194 1.00 71.40 ATOM 237 O ARG F 476 141.890 142.794 176.595 1.00 71.40 ATOM 238 CB ARG F 476 142.951 142.422 179.506 1.00 71.40 ATOM 239 CG ARG F 476 144.191 141.687 179.101 1.00 71.40 ATOM 240 CD ARG F 476 144.338 140.421 179.904 1.00 71.40 ATOM 241 NE ARG F 476 143.234 139.497 179.678 1.00 71.40 ATOM 242 CZ ARG F 476 143.242 138.537 178.761 1.00 71.40 ATOM 243 NH1 ARG F 476 142.196 137.737 178.629 1.00 71.40 ATOM 244 NH2 ARG F 476 144.297 138.379 177.977 1.00 71.40 ATOM 245 N GLU F 477 143.880 143.841 176.607 1.00 73.22 ATOM 246 CA GLU F 477 144.084 143.658 175.176 1.00 73.22 ATOM 247 C GLU F 477 144.295 142.180 174.877 1.00 73.22 ATOM 248 O GLU F 477 145.193 141.564 175.462 1.00 73.22 ATOM 249 CB GLU F 477 145.273 144.485 174.702 1.00 73.22 ATOM 250 CG GLU F 477 145.499 144.474 173.193 1.00 73.22 ATOM 251 CD GLU F 477 144.403 145.188 172.416 1.00 73.22 ATOM 252 OE1 GLU F 477 143.741 146.075 172.990 1.00 73.22 ATOM 253 OE2 GLU F 477 144.214 144.874 171.222 1.00 73.22 ATOM 254 N PRO F 478 143.497 141.572 174.002 1.00 71.97 ATOM 255 CA PRO F 478 143.597 140.125 173.793 1.00 71.97 ATOM 256 C PRO F 478 144.864 139.726 173.056 1.00 71.97 ATOM 257 O PRO F 478 145.468 140.514 172.326 1.00 71.97 ATOM 258 CB PRO F 478 142.353 139.804 172.959 1.00 71.97 ATOM 259 CG PRO F 478 142.015 141.065 172.294 1.00 71.97 ATOM 260 CD PRO F 478 142.407 142.168 173.218 1.00 71.97 ATOM 261 N THR F 479 145.265 138.487 173.267 1.00 72.66 ATOM 262 CA THR F 479 146.372 137.815 172.610 1.00 72.66 ATOM 263 C THR F 479 145.886 137.167 171.320 1.00 72.66 ATOM 264 O THR F 479 144.705 136.837 171.203 1.00 72.66 ATOM 265 CB THR F 479 146.964 136.744 173.521 1.00 72.66 ATOM 266 OG1 THR F 479 145.953 135.788 173.849 1.00 72.66 ATOM 267 CG2 THR F 479 147.495 137.363 174.792 1.00 72.66 TER