HEADER HYDROLASE 31-DEC-69 6Z8W TITLE X-ray structure of the complex between human alpha thrombin and a TITLE 2 thrombin binding aptamer variant (TBA-3G), which contains TITLE 3 1-beta-D-glucopyranosyl residue in the side chain of Thy3 at N3. COMPND MOL_ID: 1; COMPND 2 MOLECULE: Prothrombin; COMPND 3 CHAIN: L; COMPND 4 EC: 3.4.21.5; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.73 ANGSTORMS DBREF 6Z8W L -5 17 UNP P00734 THRB_HUMAN 328 363 SEQRES 1 L 27 ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SER SEQRES 2 L 27 LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER TYR SEQRES 3 L 27 ILE ATOM 1 N ALA L 1B 38.494 -20.582 41.401 1.00 50.12 ATOM 2 CA ALA L 1B 39.974 -20.679 41.716 1.00 48.61 ATOM 3 C ALA L 1B 40.751 -19.714 40.784 1.00 38.24 ATOM 4 O ALA L 1B 40.244 -18.662 40.393 1.00 37.09 ATOM 5 CB ALA L 1B 40.417 -22.163 41.673 1.00 47.55 ATOM 6 N ASP L 1A 42.036 -19.979 40.539 1.00 32.50 ATOM 7 CA ASP L 1A 42.739 -19.110 39.616 1.00 32.51 ATOM 8 C ASP L 1A 42.834 -19.810 38.249 1.00 29.98 ATOM 9 O ASP L 1A 43.875 -19.667 37.593 1.00 28.07 ATOM 10 CB ASP L 1A 44.134 -18.646 40.114 1.00 33.31 ATOM 11 CG ASP L 1A 45.024 -19.880 40.248 1.00 38.56 ATOM 12 OD1 ASP L 1A 44.434 -20.967 40.299 1.00 40.32 ATOM 13 OD2 ASP L 1A 46.260 -19.725 40.386 1.00 36.69 ATOM 14 N CYS L 1 41.782 -20.539 37.832 1.00 28.41 ATOM 15 CA CYS L 1 41.804 -21.044 36.453 1.00 29.12 ATOM 16 C CYS L 1 42.125 -19.920 35.467 1.00 27.19 ATOM 17 O CYS L 1 41.600 -18.796 35.588 1.00 26.62 ATOM 18 CB CYS L 1 40.520 -21.778 36.031 1.00 29.27 ATOM 19 SG CYS L 1 39.108 -20.650 35.753 1.00 38.36 ATOM 20 N GLY L 2 42.860 -20.255 34.378 1.00 25.97 ATOM 21 CA GLY L 2 42.931 -19.311 33.248 1.00 25.07 ATOM 22 C GLY L 2 43.919 -18.172 33.518 1.00 24.93 ATOM 23 O GLY L 2 44.000 -17.284 32.707 1.00 25.03 ATOM 24 N LEU L 3 44.625 -18.151 34.684 1.00 24.80 ATOM 25 CA LEU L 3 45.574 -17.078 34.947 1.00 24.06 ATOM 26 C LEU L 3 46.972 -17.703 35.014 1.00 26.21 ATOM 27 O LEU L 3 47.236 -18.543 35.866 1.00 25.50 ATOM 28 CB LEU L 3 45.225 -16.377 36.282 1.00 24.42 ATOM 29 CG LEU L 3 43.879 -15.619 36.340 1.00 25.87 ATOM 30 CD1 LEU L 3 43.579 -15.180 37.825 1.00 29.34 ATOM 31 CD2 LEU L 3 43.930 -14.367 35.484 1.00 25.00 ATOM 32 N ARG L 4 47.871 -17.341 34.086 1.00 24.12 ATOM 33 CA ARG L 4 49.088 -18.119 33.907 1.00 23.48 ATOM 34 C ARG L 4 50.128 -17.711 34.929 1.00 24.79 ATOM 35 O ARG L 4 50.442 -16.524 35.037 1.00 24.23 ATOM 36 CB ARG L 4 49.648 -17.931 32.481 1.00 21.85 ATOM 37 CG ARG L 4 48.625 -18.393 31.428 1.00 21.23 ATOM 38 CD ARG L 4 49.191 -18.085 30.037 1.00 21.86 ATOM 39 NE ARG L 4 49.060 -16.638 29.847 1.00 22.28 ATOM 40 CZ ARG L 4 49.437 -15.992 28.733 1.00 23.05 ATOM 41 NH1 ARG L 4 49.970 -16.690 27.722 1.00 21.29 ATOM 42 NH2 ARG L 4 49.294 -14.657 28.662 1.00 23.17 ATOM 43 N PRO L 5 50.786 -18.680 35.622 1.00 25.22 ATOM 44 CA PRO L 5 51.887 -18.333 36.534 1.00 26.15 ATOM 45 C PRO L 5 52.945 -17.429 35.934 1.00 28.62 ATOM 46 O PRO L 5 53.427 -16.557 36.645 1.00 26.39 ATOM 47 CB PRO L 5 52.487 -19.683 36.920 1.00 25.91 ATOM 48 CG PRO L 5 51.256 -20.587 36.875 1.00 24.62 ATOM 49 CD PRO L 5 50.394 -20.104 35.702 1.00 22.73 ATOM 50 N LEU L 6 53.294 -17.577 34.647 1.00 26.88 ATOM 51 CA LEU L 6 54.459 -16.827 34.145 1.00 27.43 ATOM 52 C LEU L 6 53.997 -15.578 33.380 1.00 26.97 ATOM 53 O LEU L 6 54.850 -14.813 32.959 1.00 28.33 ATOM 54 CB LEU L 6 55.379 -17.702 33.261 1.00 28.79 ATOM 55 CG LEU L 6 56.146 -18.806 33.998 1.00 30.86 ATOM 56 CD1 LEU L 6 56.893 -19.703 33.029 1.00 30.90 ATOM 57 CD2 LEU L 6 57.137 -18.199 35.040 1.00 32.43 ATOM 58 N PHE L 7 52.671 -15.304 33.307 1.00 24.63 ATOM 59 CA PHE L 7 52.186 -14.131 32.593 1.00 25.03 ATOM 60 C PHE L 7 51.275 -13.289 33.485 1.00 25.59 ATOM 61 O PHE L 7 51.757 -12.361 34.107 1.00 28.80 ATOM 62 CB PHE L 7 51.650 -14.494 31.181 1.00 23.09 ATOM 63 CG PHE L 7 52.736 -15.014 30.255 1.00 26.96 ATOM 64 CD1 PHE L 7 53.569 -14.130 29.580 1.00 25.88 ATOM 65 CD2 PHE L 7 53.032 -16.383 30.164 1.00 26.69 ATOM 66 CE1 PHE L 7 54.659 -14.579 28.845 1.00 27.52 ATOM 67 CE2 PHE L 7 54.063 -16.858 29.334 1.00 25.73 ATOM 68 CZ PHE L 7 54.859 -15.947 28.680 1.00 28.14 ATOM 69 N GLU L 8 49.968 -13.582 33.547 1.00 25.56 ATOM 70 CA GLU L 8 49.045 -12.720 34.282 1.00 25.60 ATOM 71 C GLU L 8 49.493 -12.597 35.745 1.00 27.76 ATOM 72 O GLU L 8 49.489 -11.476 36.320 1.00 28.10 ATOM 73 CB GLU L 8 47.648 -13.331 34.238 1.00 24.77 ATOM 74 CG GLU L 8 46.964 -13.113 32.915 1.00 24.60 ATOM 75 CD GLU L 8 47.411 -14.105 31.830 1.00 26.75 ATOM 76 OE1 GLU L 8 47.986 -15.193 32.164 1.00 26.09 ATOM 77 OE2 GLU L 8 47.245 -13.773 30.631 1.00 26.75 ATOM 78 N LYS L 9 50.033 -13.700 36.325 1.00 27.98 ATOM 79 CA LYS L 9 50.412 -13.651 37.744 1.00 29.89 ATOM 80 C LYS L 9 51.640 -12.797 38.017 1.00 32.57 ATOM 81 O LYS L 9 51.863 -12.376 39.181 1.00 33.82 ATOM 82 CB LYS L 9 50.628 -15.029 38.378 1.00 30.60 ATOM 83 CG LYS L 9 49.340 -15.835 38.415 1.00 30.88 ATOM 84 CD LYS L 9 48.370 -15.232 39.403 1.00 40.09 ATOM 85 CE LYS L 9 47.141 -16.105 39.435 1.00 45.69 ATOM 86 NZ LYS L 9 46.540 -16.173 40.793 1.00 54.41 ATOM 87 N LYS L 10 52.425 -12.509 36.974 1.00 32.02 ATOM 88 CA LYS L 10 53.590 -11.665 37.118 1.00 33.03 ATOM 89 C LYS L 10 53.339 -10.325 36.443 1.00 35.25 ATOM 90 O LYS L 10 54.295 -9.575 36.238 1.00 37.65 ATOM 91 CB LYS L 10 54.755 -12.334 36.402 1.00 34.93 ATOM 92 CG LYS L 10 55.464 -13.488 37.105 1.00 38.12 ATOM 93 CD LYS L 10 56.635 -13.813 36.221 1.00 43.75 ATOM 94 CE LYS L 10 57.817 -14.532 36.793 1.00 47.56 ATOM 95 NZ LYS L 10 57.286 -15.370 37.904 1.00 53.94 ATOM 96 N SER L 11 52.103 -10.043 36.008 1.00 32.29 ATOM 97 CA SER L 11 51.896 -8.830 35.212 1.00 35.28 ATOM 98 C SER L 11 52.776 -8.762 33.955 1.00 38.07 ATOM 99 O SER L 11 53.282 -7.687 33.645 1.00 38.18 ATOM 100 CB SER L 11 52.158 -7.597 36.028 1.00 38.11 ATOM 101 OG SER L 11 51.229 -7.580 37.072 1.00 40.08 ATOM 102 N LEU L 12 53.012 -9.895 33.270 1.00 35.46 ATOM 103 CA LEU L 12 53.783 -9.862 32.038 1.00 35.34 ATOM 104 C LEU L 12 52.805 -10.265 30.949 1.00 34.40 ATOM 105 O LEU L 12 51.929 -11.095 31.224 1.00 29.97 ATOM 106 CB LEU L 12 54.947 -10.867 32.117 1.00 35.48 ATOM 107 CG LEU L 12 56.046 -10.507 33.126 1.00 38.15 ATOM 108 CD1 LEU L 12 57.054 -11.662 33.276 1.00 32.90 ATOM 109 CD2 LEU L 12 56.718 -9.172 32.745 1.00 37.13 ATOM 110 N GLU L 13 52.954 -9.660 29.751 1.00 34.07 ATOM 111 CA GLU L 13 52.160 -9.996 28.581 1.00 35.50 ATOM 112 C GLU L 13 52.969 -10.905 27.679 1.00 31.68 ATOM 113 O GLU L 13 54.160 -10.677 27.489 1.00 30.33 ATOM 114 CB GLU L 13 51.786 -8.740 27.787 1.00 41.22 ATOM 115 CG GLU L 13 50.474 -8.184 28.303 1.00 48.27 ATOM 116 CD GLU L 13 50.065 -6.844 27.719 1.00 58.79 ATOM 117 OE1 GLU L 13 50.428 -6.539 26.525 1.00 60.22 ATOM 118 OE2 GLU L 13 49.382 -6.106 28.470 1.00 63.65 ATOM 119 N ASP L 14 52.271 -11.835 27.016 1.00 28.26 ATOM 120 CA ASP L 14 52.972 -12.607 26.012 1.00 28.49 ATOM 121 C ASP L 14 53.028 -11.795 24.707 1.00 30.00 ATOM 122 O ASP L 14 52.398 -10.728 24.518 1.00 30.72 ATOM 123 CB ASP L 14 52.420 -14.040 25.933 1.00 28.77 ATOM 124 CG ASP L 14 51.080 -14.117 25.223 1.00 26.52 ATOM 125 OD1 ASP L 14 50.979 -13.534 24.119 1.00 29.71 ATOM 126 OD2 ASP L 14 50.126 -14.774 25.787 1.00 28.08 ATOM 127 N LYS L 14A 53.834 -12.306 23.808 1.00 30.96 ATOM 128 CA LYS L 14A 54.147 -11.641 22.556 1.00 35.70 ATOM 129 C LYS L 14A 52.964 -11.374 21.651 1.00 34.21 ATOM 130 O LYS L 14A 53.103 -10.510 20.807 1.00 37.40 ATOM 131 CB LYS L 14A 55.335 -12.287 21.844 1.00 39.80 ATOM 132 CG LYS L 14A 56.588 -12.176 22.699 1.00 48.62 ATOM 133 CD LYS L 14A 57.945 -12.307 22.001 1.00 60.16 ATOM 134 CE LYS L 14A 58.109 -13.674 21.359 1.00 64.18 ATOM 135 NZ LYS L 14A 59.516 -14.138 21.448 1.00 69.61 ATOM 136 N THR L 14B 51.827 -12.065 21.771 1.00 32.09 ATOM 137 CA THR L 14B 50.805 -11.816 20.766 1.00 30.56 ATOM 138 C THR L 14B 49.428 -11.622 21.386 1.00 29.76 ATOM 139 O THR L 14B 48.457 -11.442 20.652 1.00 30.83 ATOM 140 CB THR L 14B 50.794 -12.891 19.648 1.00 33.46 ATOM 141 OG1 THR L 14B 50.354 -14.108 20.276 1.00 32.77 ATOM 142 CG2 THR L 14B 52.149 -13.116 19.005 1.00 33.24 ATOM 143 N GLU L 14C 49.295 -11.612 22.721 1.00 27.66 ATOM 144 CA GLU L 14C 47.943 -11.470 23.263 1.00 26.15 ATOM 145 C GLU L 14C 47.311 -10.115 22.924 1.00 27.38 ATOM 146 O GLU L 14C 46.072 -10.011 22.910 1.00 26.58 ATOM 147 CB GLU L 14C 47.934 -11.763 24.791 1.00 27.48 ATOM 148 CG GLU L 14C 48.872 -10.828 25.571 1.00 28.32 ATOM 149 CD GLU L 14C 48.744 -11.111 27.079 1.00 32.41 ATOM 150 OE1 GLU L 14C 49.585 -11.850 27.649 1.00 32.80 ATOM 151 OE2 GLU L 14C 47.762 -10.670 27.651 1.00 31.24 ATOM 152 N ARG L 14D 48.123 -9.047 22.728 1.00 29.89 ATOM 153 CA ARG L 14D 47.561 -7.733 22.348 1.00 31.87 ATOM 154 C ARG L 14D 46.758 -7.847 21.023 1.00 32.56 ATOM 155 O ARG L 14D 45.682 -7.236 20.837 1.00 32.06 ATOM 156 CB ARG L 14D 48.679 -6.678 22.273 1.00 34.92 ATOM 157 CG ARG L 14D 48.210 -5.258 21.943 1.00 39.45 ATOM 158 N GLU L 14E 47.208 -8.750 20.136 1.00 30.15 ATOM 159 CA GLU L 14E 46.505 -8.951 18.872 1.00 32.54 ATOM 160 C GLU L 14E 45.093 -9.467 19.198 1.00 31.65 ATOM 161 O GLU L 14E 44.137 -9.030 18.545 1.00 30.02 ATOM 162 CB GLU L 14E 47.340 -9.882 17.971 1.00 33.00 ATOM 163 CG GLU L 14E 46.571 -10.448 16.768 1.00 37.74 ATOM 164 CD GLU L 14E 47.268 -11.517 15.888 1.00 39.70 ATOM 165 OE1 GLU L 14E 48.281 -12.125 16.361 1.00 44.41 ATOM 166 OE2 GLU L 14E 46.809 -11.753 14.703 1.00 40.00 ATOM 167 N LEU L 14F 44.945 -10.348 20.239 1.00 27.17 ATOM 168 CA LEU L 14F 43.600 -10.806 20.578 1.00 27.05 ATOM 169 C LEU L 14F 42.749 -9.656 21.152 1.00 29.03 ATOM 170 O LEU L 14F 41.556 -9.489 20.793 1.00 28.67 ATOM 171 CB LEU L 14F 43.682 -11.973 21.590 1.00 25.98 ATOM 172 CG LEU L 14F 44.610 -13.143 21.199 1.00 26.54 ATOM 173 CD1 LEU L 14F 44.561 -14.243 22.253 1.00 25.13 ATOM 174 CD2 LEU L 14F 44.193 -13.763 19.863 1.00 25.62 ATOM 175 N LEU L 14G 43.327 -8.912 22.118 1.00 29.38 ATOM 176 CA LEU L 14G 42.625 -7.771 22.723 1.00 33.46 ATOM 177 C LEU L 14G 42.177 -6.769 21.647 1.00 32.41 ATOM 178 O LEU L 14G 41.026 -6.319 21.636 1.00 32.66 ATOM 179 CB LEU L 14G 43.505 -7.092 23.795 1.00 37.38 ATOM 180 CG LEU L 14G 42.926 -5.729 24.250 1.00 53.33 ATOM 181 CD1 LEU L 14G 41.563 -5.863 24.975 1.00 52.88 ATOM 182 CD2 LEU L 14G 43.911 -4.744 24.970 1.00 51.13 ATOM 183 N GLU L 14H 43.035 -6.524 20.650 1.00 34.15 ATOM 184 CA GLU L 14H 42.717 -5.558 19.596 1.00 36.96 ATOM 185 C GLU L 14H 41.549 -6.031 18.747 1.00 37.00 ATOM 186 O GLU L 14H 40.775 -5.200 18.289 1.00 35.61 ATOM 187 CB GLU L 14H 43.941 -5.219 18.769 1.00 42.32 ATOM 188 CG GLU L 14H 44.637 -3.997 19.345 1.00 56.59 ATOM 189 CD GLU L 14H 46.141 -3.944 19.130 1.00 67.86 ATOM 190 OE1 GLU L 14H 46.617 -4.627 18.191 1.00 71.06 ATOM 191 OE2 GLU L 14H 46.847 -3.240 19.920 1.00 79.98 ATOM 192 N SER L 14I 41.367 -7.355 18.629 1.00 33.02 ATOM 193 CA SER L 14I 40.342 -7.843 17.731 1.00 33.46 ATOM 194 C SER L 14I 38.986 -7.512 18.307 1.00 34.88 ATOM 195 O SER L 14I 38.005 -7.594 17.580 1.00 35.07 ATOM 196 CB SER L 14I 40.424 -9.325 17.452 1.00 31.57 ATOM 197 OG SER L 14I 40.072 -10.125 18.597 1.00 28.11 ATOM 198 N TYR L 14J 38.902 -7.235 19.615 1.00 35.11 ATOM 199 CA TYR L 14J 37.588 -6.912 20.184 1.00 37.56 ATOM 200 C TYR L 14J 37.187 -5.470 19.860 1.00 39.54 ATOM 201 O TYR L 14J 36.018 -5.137 19.994 1.00 41.79 ATOM 202 CB TYR L 14J 37.596 -6.980 21.728 1.00 37.63 ATOM 203 CG TYR L 14J 37.915 -8.338 22.276 1.00 34.02 ATOM 204 CD1 TYR L 14J 37.225 -9.453 21.847 1.00 34.79 ATOM 205 CD2 TYR L 14J 38.915 -8.517 23.221 1.00 35.31 ATOM 206 CE1 TYR L 14J 37.537 -10.723 22.330 1.00 34.31 ATOM 207 CE2 TYR L 14J 39.241 -9.770 23.733 1.00 31.59 ATOM 208 CZ TYR L 14J 38.551 -10.876 23.280 1.00 32.79 ATOM 209 OH TYR L 14J 38.872 -12.116 23.760 1.00 30.34 ATOM 210 N ILE L 14K 38.139 -4.623 19.420 1.00 42.81 ATOM 211 CA ILE L 14K 37.854 -3.199 19.223 1.00 48.50 ATOM 212 C ILE L 14K 36.771 -3.026 18.152 1.00 51.42 ATOM 213 O ILE L 14K 37.148 -3.227 16.979 1.00 55.83 ATOM 214 CB ILE L 14K 39.106 -2.377 18.840 1.00 50.53 ATOM 215 CG1 ILE L 14K 40.165 -2.332 19.945 1.00 51.86 ATOM 216 CG2 ILE L 14K 38.705 -0.958 18.430 1.00 55.57 ATOM 217 CD1 ILE L 14K 41.520 -1.806 19.422 1.00 54.39 TER