HEADER RIBOSOME 31-DEC-69 7A01 TITLE The Halastavi arva virus intergenic region IRES promotes translation TITLE 2 by the simplest possible initiation mechanism COMPND MOL_ID: 62; COMPND 2 MOLECULE: 60s ribosomal protein l41; COMPND 3 CHAIN: X3; EXPDTA ELECTRON MICROSCOPY DBREF 7A01 X 2 24 UNP A0A087WN A0A087WNH4_ 2 24 SEQRES 1 X3 23 ARG ALA LYS TRP ARG LYS LYS ARG MET ARG ARG LEU LYS SEQRES 2 X3 23 ARG LYS ARG ARG LYS MET ARG GLN ARG SER ATOM 1 N ARG X 2 189.201 235.578 162.596 1.00 95.60 ATOM 2 CA ARG X 2 188.855 235.187 161.238 1.00 95.60 ATOM 3 C ARG X 2 187.733 234.149 161.251 1.00 95.60 ATOM 4 O ARG X 2 187.682 233.274 162.119 1.00 95.60 ATOM 5 CB ARG X 2 190.087 234.648 160.506 1.00 95.60 ATOM 6 CG ARG X 2 189.838 234.245 159.063 1.00 95.60 ATOM 7 CD ARG X 2 191.133 234.223 158.274 1.00 95.60 ATOM 8 NE ARG X 2 191.186 233.094 157.349 1.00 95.60 ATOM 9 CZ ARG X 2 192.300 232.638 156.780 1.00 95.60 ATOM 10 NH1 ARG X 2 192.249 231.595 155.959 1.00 95.60 ATOM 11 NH2 ARG X 2 193.469 233.201 157.059 1.00 95.60 ATOM 12 N ALA X 3 186.833 234.252 160.273 1.00 92.45 ATOM 13 CA ALA X 3 185.654 233.395 160.259 1.00 92.45 ATOM 14 C ALA X 3 186.019 231.934 160.015 1.00 92.45 ATOM 15 O ALA X 3 185.309 231.034 160.474 1.00 92.45 ATOM 16 CB ALA X 3 184.660 233.889 159.211 1.00 92.45 ATOM 17 N LYS X 4 187.119 231.670 159.303 1.00 90.69 ATOM 18 CA LYS X 4 187.548 230.286 159.132 1.00 90.69 ATOM 19 C LYS X 4 187.770 229.608 160.474 1.00 90.69 ATOM 20 O LYS X 4 187.270 228.504 160.716 1.00 90.69 ATOM 21 CB LYS X 4 188.825 230.214 158.302 1.00 90.69 ATOM 22 CG LYS X 4 189.277 228.783 158.000 1.00 90.69 ATOM 23 CD LYS X 4 190.456 228.741 157.019 1.00 90.69 ATOM 24 CE LYS X 4 190.133 227.997 155.733 1.00 90.69 ATOM 25 NZ LYS X 4 191.117 228.320 154.666 1.00 90.69 ATOM 26 N TRP X 5 188.485 230.259 161.384 1.00 90.66 ATOM 27 CA TRP X 5 188.715 229.578 162.648 1.00 90.66 ATOM 28 C TRP X 5 187.615 229.824 163.664 1.00 90.66 ATOM 29 O TRP X 5 187.511 229.063 164.627 1.00 90.66 ATOM 30 CB TRP X 5 190.082 229.926 163.220 1.00 90.66 ATOM 31 CG TRP X 5 191.125 229.346 162.369 1.00 90.66 ATOM 32 CD1 TRP X 5 191.660 228.105 162.488 1.00 90.66 ATOM 33 CD2 TRP X 5 191.793 229.969 161.279 1.00 90.66 ATOM 34 NE1 TRP X 5 192.601 227.901 161.517 1.00 90.66 ATOM 35 CE2 TRP X 5 192.708 229.037 160.764 1.00 90.66 ATOM 36 CE3 TRP X 5 191.705 231.221 160.684 1.00 90.66 ATOM 37 CZ2 TRP X 5 193.529 229.317 159.682 1.00 90.66 ATOM 38 CZ3 TRP X 5 192.513 231.490 159.615 1.00 90.66 ATOM 39 CH2 TRP X 5 193.419 230.550 159.124 1.00 90.66 ATOM 40 N ARG X 6 186.743 230.811 163.455 1.00 87.66 ATOM 41 CA ARG X 6 185.483 230.766 164.189 1.00 87.66 ATOM 42 C ARG X 6 184.728 229.484 163.853 1.00 87.66 ATOM 43 O ARG X 6 184.238 228.783 164.749 1.00 87.66 ATOM 44 CB ARG X 6 184.623 231.992 163.883 1.00 87.66 ATOM 45 CG ARG X 6 185.299 233.335 164.102 1.00 87.66 ATOM 46 CD ARG X 6 185.762 233.513 165.541 1.00 87.66 ATOM 47 NE ARG X 6 186.067 234.909 165.863 1.00 87.66 ATOM 48 CZ ARG X 6 187.258 235.483 165.720 1.00 87.66 ATOM 49 NH1 ARG X 6 188.286 234.792 165.255 1.00 87.66 ATOM 50 NH2 ARG X 6 187.421 236.754 166.045 1.00 87.66 ATOM 51 N LYS X 7 184.669 229.136 162.564 1.00 77.85 ATOM 52 CA LYS X 7 184.004 227.906 162.153 1.00 77.85 ATOM 53 C LYS X 7 184.732 226.678 162.681 1.00 77.85 ATOM 54 O LYS X 7 184.096 225.693 163.061 1.00 77.85 ATOM 55 CB LYS X 7 183.892 227.852 160.632 1.00 77.85 ATOM 56 CG LYS X 7 183.083 226.684 160.113 1.00 77.85 ATOM 57 CD LYS X 7 183.418 226.385 158.664 1.00 77.85 ATOM 58 CE LYS X 7 183.188 227.601 157.790 1.00 77.85 ATOM 59 NZ LYS X 7 183.759 227.426 156.434 1.00 77.85 ATOM 60 N LYS X 8 186.066 226.706 162.704 1.00 79.28 ATOM 61 CA LYS X 8 186.790 225.564 163.260 1.00 79.28 ATOM 62 C LYS X 8 186.562 225.420 164.758 1.00 79.28 ATOM 63 O LYS X 8 186.451 224.293 165.259 1.00 79.28 ATOM 64 CB LYS X 8 188.285 225.663 162.969 1.00 79.28 ATOM 65 CG LYS X 8 188.913 224.304 162.684 1.00 79.28 ATOM 66 CD LYS X 8 190.272 224.418 162.022 1.00 79.28 ATOM 67 CE LYS X 8 190.721 223.080 161.453 1.00 79.28 ATOM 68 NZ LYS X 8 191.949 223.206 160.616 1.00 79.28 ATOM 69 N ARG X 9 186.507 226.531 165.492 1.00 75.18 ATOM 70 CA ARG X 9 186.167 226.452 166.906 1.00 75.18 ATOM 71 C ARG X 9 184.783 225.858 167.088 1.00 75.18 ATOM 72 O ARG X 9 184.569 225.008 167.963 1.00 75.18 ATOM 73 CB ARG X 9 186.240 227.833 167.544 1.00 75.18 ATOM 74 CG ARG X 9 185.884 227.844 169.011 1.00 75.18 ATOM 75 CD ARG X 9 186.630 228.947 169.730 1.00 75.18 ATOM 76 NE ARG X 9 186.231 229.063 171.129 1.00 75.18 ATOM 77 CZ ARG X 9 185.901 230.206 171.720 1.00 75.18 ATOM 78 NH1 ARG X 9 185.921 231.340 171.035 1.00 75.18 ATOM 79 NH2 ARG X 9 185.557 230.216 172.998 1.00 75.18 ATOM 80 N MET X 10 183.833 226.277 166.253 1.00 68.35 ATOM 81 CA MET X 10 182.498 225.701 166.329 1.00 68.35 ATOM 82 C MET X 10 182.518 224.213 166.007 1.00 68.35 ATOM 83 O MET X 10 181.796 223.433 166.628 1.00 68.35 ATOM 84 CB MET X 10 181.546 226.441 165.398 1.00 68.35 ATOM 85 CG MET X 10 180.102 226.358 165.844 1.00 68.35 ATOM 86 SD MET X 10 179.823 227.149 167.438 1.00 68.35 ATOM 87 CE MET X 10 179.282 225.751 168.404 1.00 68.35 ATOM 88 N ARG X 11 183.342 223.801 165.046 1.00 72.03 ATOM 89 CA ARG X 11 183.424 222.388 164.688 1.00 72.03 ATOM 90 C ARG X 11 183.943 221.553 165.850 1.00 72.03 ATOM 91 O ARG X 11 183.362 220.517 166.202 1.00 72.03 ATOM 92 CB ARG X 11 184.327 222.215 163.472 1.00 72.03 ATOM 93 CG ARG X 11 183.687 222.610 162.168 1.00 72.03 ATOM 94 CD ARG X 11 182.817 221.493 161.641 1.00 72.03 ATOM 95 NE ARG X 11 182.001 221.909 160.508 1.00 72.03 ATOM 96 CZ ARG X 11 182.476 222.160 159.294 1.00 72.03 ATOM 97 NH1 ARG X 11 183.770 222.040 159.038 1.00 72.03 ATOM 98 NH2 ARG X 11 181.651 222.535 158.331 1.00 72.03 ATOM 99 N ARG X 12 185.052 221.982 166.449 1.00 67.03 ATOM 100 CA ARG X 12 185.596 221.246 167.585 1.00 67.03 ATOM 101 C ARG X 12 184.596 221.192 168.730 1.00 67.03 ATOM 102 O ARG X 12 184.391 220.136 169.344 1.00 67.03 ATOM 103 CB ARG X 12 186.914 221.867 168.041 1.00 67.03 ATOM 104 CG ARG X 12 188.048 221.748 167.040 1.00 67.03 ATOM 105 CD ARG X 12 187.908 220.502 166.167 1.00 67.03 ATOM 106 NE ARG X 12 188.869 220.493 165.066 1.00 67.03 ATOM 107 CZ ARG X 12 189.999 219.793 165.061 1.00 67.03 ATOM 108 NH1 ARG X 12 190.310 219.024 166.091 1.00 67.03 ATOM 109 NH2 ARG X 12 190.814 219.854 164.019 1.00 67.03 ATOM 110 N LEU X 13 183.952 222.319 169.030 1.00 66.03 ATOM 111 CA LEU X 13 183.005 222.318 170.134 1.00 66.03 ATOM 112 C LEU X 13 181.793 221.457 169.811 1.00 66.03 ATOM 113 O LEU X 13 181.195 220.860 170.712 1.00 66.03 ATOM 114 CB LEU X 13 182.600 223.748 170.460 1.00 66.03 ATOM 115 CG LEU X 13 181.903 223.997 171.789 1.00 66.03 ATOM 116 CD1 LEU X 13 182.221 225.400 172.223 1.00 66.03 ATOM 117 CD2 LEU X 13 180.419 223.815 171.673 1.00 66.03 ATOM 118 N LYS X 14 181.428 221.367 168.533 1.00 65.51 ATOM 119 CA LYS X 14 180.352 220.473 168.135 1.00 65.51 ATOM 120 C LYS X 14 180.738 219.024 168.363 1.00 65.51 ATOM 121 O LYS X 14 179.907 218.220 168.790 1.00 65.51 ATOM 122 CB LYS X 14 179.991 220.699 166.672 1.00 65.51 ATOM 123 CG LYS X 14 178.525 220.522 166.370 1.00 65.51 ATOM 124 CD LYS X 14 178.193 221.093 165.011 1.00 65.51 ATOM 125 CE LYS X 14 178.306 220.032 163.937 1.00 65.51 ATOM 126 NZ LYS X 14 178.140 220.604 162.581 1.00 65.51 ATOM 127 N ARG X 15 181.992 218.665 168.074 1.00 67.44 ATOM 128 CA ARG X 15 182.435 217.303 168.378 1.00 67.44 ATOM 129 C ARG X 15 182.397 217.037 169.879 1.00 67.44 ATOM 130 O ARG X 15 181.979 215.956 170.323 1.00 67.44 ATOM 131 CB ARG X 15 183.837 217.055 167.829 1.00 67.44 ATOM 132 CG ARG X 15 184.096 215.600 167.487 1.00 67.44 ATOM 133 CD ARG X 15 185.367 215.428 166.678 1.00 67.44 ATOM 134 NE ARG X 15 185.386 216.285 165.500 1.00 67.44 ATOM 135 CZ ARG X 15 186.336 217.175 165.241 1.00 67.44 ATOM 136 NH1 ARG X 15 187.356 217.318 166.076 1.00 67.44 ATOM 137 NH2 ARG X 15 186.269 217.920 164.144 1.00 67.44 ATOM 138 N LYS X 16 182.817 218.022 170.672 1.00 59.76 ATOM 139 CA LYS X 16 182.740 217.894 172.123 1.00 59.76 ATOM 140 C LYS X 16 181.315 217.627 172.577 1.00 59.76 ATOM 141 O LYS X 16 181.060 216.689 173.338 1.00 59.76 ATOM 142 CB LYS X 16 183.274 219.159 172.789 1.00 59.76 ATOM 143 CG LYS X 16 183.358 219.081 174.303 1.00 59.76 ATOM 144 CD LYS X 16 183.652 220.443 174.919 1.00 59.76 ATOM 145 CE LYS X 16 184.586 221.290 174.051 1.00 59.76 ATOM 146 NZ LYS X 16 185.920 220.671 173.801 1.00 59.76 ATOM 147 N ARG X 17 180.369 218.446 172.119 1.00 59.84 ATOM 148 CA ARG X 17 178.995 218.288 172.577 1.00 59.84 ATOM 149 C ARG X 17 178.380 216.998 172.055 1.00 59.84 ATOM 150 O ARG X 17 177.612 216.343 172.767 1.00 59.84 ATOM 151 CB ARG X 17 178.146 219.484 172.167 1.00 59.84 ATOM 152 CG ARG X 17 176.921 219.621 173.040 1.00 59.84 ATOM 153 CD ARG X 17 175.971 220.697 172.556 1.00 59.84 ATOM 154 NE ARG X 17 176.540 222.037 172.579 1.00 59.84 ATOM 155 CZ ARG X 17 176.812 222.745 171.491 1.00 59.84 ATOM 156 NH1 ARG X 17 176.585 222.231 170.292 1.00 59.84 ATOM 157 NH2 ARG X 17 177.312 223.963 171.601 1.00 59.84 ATOM 158 N ARG X 18 178.711 216.608 170.821 1.00 61.76 ATOM 159 CA ARG X 18 178.207 215.351 170.279 1.00 61.76 ATOM 160 C ARG X 18 178.639 214.174 171.140 1.00 61.76 ATOM 161 O ARG X 18 177.822 213.313 171.491 1.00 61.76 ATOM 162 CB ARG X 18 178.693 215.156 168.843 1.00 61.76 ATOM 163 CG ARG X 18 177.920 215.943 167.809 1.00 61.76 ATOM 164 CD ARG X 18 178.352 215.582 166.393 1.00 61.76 ATOM 165 NE ARG X 18 179.645 216.161 166.041 1.00 61.76 ATOM 166 CZ ARG X 18 180.234 216.008 164.860 1.00 61.76 ATOM 167 NH1 ARG X 18 179.644 215.299 163.910 1.00 61.76 ATOM 168 NH2 ARG X 18 181.410 216.569 164.627 1.00 61.76 ATOM 169 N LYS X 19 179.920 214.125 171.509 1.00 53.78 ATOM 170 CA LYS X 19 180.369 212.987 172.304 1.00 53.78 ATOM 171 C LYS X 19 179.841 213.058 173.732 1.00 53.78 ATOM 172 O LYS X 19 179.453 212.032 174.300 1.00 53.78 ATOM 173 CB LYS X 19 181.890 212.887 172.286 1.00 53.78 ATOM 174 CG LYS X 19 182.414 211.700 173.064 1.00 53.78 ATOM 175 CD LYS X 19 181.687 210.419 172.679 1.00 53.78 ATOM 176 CE LYS X 19 182.134 209.878 171.337 1.00 53.78 ATOM 177 NZ LYS X 19 181.518 208.546 171.064 1.00 53.78 ATOM 178 N MET X 20 179.804 214.251 174.330 1.00 51.66 ATOM 179 CA MET X 20 179.286 214.371 175.687 1.00 51.66 ATOM 180 C MET X 20 177.805 214.040 175.781 1.00 51.66 ATOM 181 O MET X 20 177.346 213.612 176.845 1.00 51.66 ATOM 182 CB MET X 20 179.532 215.778 176.222 1.00 51.66 ATOM 183 CG MET X 20 179.052 215.991 177.645 1.00 51.66 ATOM 184 SD MET X 20 179.210 217.696 178.211 1.00 51.66 ATOM 185 CE MET X 20 179.087 217.467 179.981 1.00 51.66 ATOM 186 N ARG X 21 177.050 214.224 174.702 1.00 50.83 ATOM 187 CA ARG X 21 175.659 213.802 174.657 1.00 50.83 ATOM 188 C ARG X 21 175.492 212.326 174.345 1.00 50.83 ATOM 189 O ARG X 21 174.576 211.696 174.879 1.00 50.83 ATOM 190 CB ARG X 21 174.899 214.620 173.613 1.00 50.83 ATOM 191 CG ARG X 21 173.409 214.669 173.828 1.00 50.83 ATOM 192 CD ARG X 21 172.744 215.533 172.782 1.00 50.83 ATOM 193 NE ARG X 21 171.371 215.118 172.550 1.00 50.83 ATOM 194 CZ ARG X 21 171.028 214.099 171.775 1.00 50.83 ATOM 195 NH1 ARG X 21 171.964 213.399 171.156 1.00 50.83 ATOM 196 NH2 ARG X 21 169.753 213.781 171.617 1.00 50.83 ATOM 197 N GLN X 22 176.351 211.759 173.494 1.00 45.98 ATOM 198 CA GLN X 22 176.226 210.349 173.151 1.00 45.98 ATOM 199 C GLN X 22 176.738 209.435 174.256 1.00 45.98 ATOM 200 O GLN X 22 176.338 208.269 174.314 1.00 45.98 ATOM 201 CB GLN X 22 176.970 210.073 171.843 1.00 45.98 ATOM 202 CG GLN X 22 176.864 208.646 171.312 1.00 45.98 ATOM 203 CD GLN X 22 177.900 207.703 171.883 1.00 45.98 ATOM 204 OE1 GLN X 22 179.103 207.905 171.727 1.00 45.98 ATOM 205 NE2 GLN X 22 177.433 206.663 172.550 1.00 45.98 ATOM 206 N ARG X 23 177.600 209.938 175.138 1.00 44.26 ATOM 207 CA ARG X 23 178.196 209.086 176.160 1.00 44.26 ATOM 208 C ARG X 23 177.149 208.550 177.129 1.00 44.26 ATOM 209 O ARG X 23 177.155 207.363 177.468 1.00 44.26 ATOM 210 CB ARG X 23 179.273 209.866 176.904 1.00 44.26 ATOM 211 CG ARG X 23 180.210 209.019 177.714 1.00 44.26 ATOM 212 CD ARG X 23 181.043 209.891 178.633 1.00 44.26 ATOM 213 NE ARG X 23 180.206 210.604 179.588 1.00 44.26 ATOM 214 CZ ARG X 23 180.661 211.197 180.681 1.00 44.26 ATOM 215 NH1 ARG X 23 179.823 211.820 181.490 1.00 44.26 ATOM 216 NH2 ARG X 23 181.948 211.153 180.975 1.00 44.26 ATOM 217 N SER X 24 176.243 209.408 177.590 1.00 39.50 ATOM 218 CA SER X 24 175.208 208.992 178.540 1.00 39.50 ATOM 219 C SER X 24 173.841 208.872 177.887 1.00 39.50 ATOM 220 O SER X 24 173.109 207.919 178.142 1.00 39.50 ATOM 221 CB SER X 24 175.118 209.970 179.708 1.00 39.50 ATOM 222 OG SER X 24 176.317 209.989 180.451 1.00 39.50 ATOM 223 OXT SER X 24 173.429 209.723 177.100 1.00 39.50 TER