HEADER DE NOVO PROTEIN 31-DEC-69 7A4T TITLE Crystal structure of the GCN coiled-coil in complex with nanobody COMPND MOL_ID: 1; COMPND 2 MOLECULE: Nanobody Nb39; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 GCN4 isoform 1; COMPND 7 CHAIN: B, C; COMPND 8 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.12 ANGSTORMS DBREF 7A4T A 1 135 PDB 7A4T 7A4T 1 135 DBREF 7A4T C 1 28 UNP A0A6A5PZ A0A6A5PZY2_ 252 279 SEQRES 1 C 28 GLN LEU GLU ASP LYS VAL GLU GLU LEU LEU SER LYS ASN SEQRES 2 C 28 TYR HIS LEU GLU ASN GLU VAL GLU ARG LEU LYS LYS LEU SEQRES 3 C 28 VAL GLY ATOM 1 CA GLN C 1 9.641 109.747 150.374 1.00 80.46 ATOM 2 C GLN C 1 11.121 109.379 150.452 1.00 78.35 ATOM 3 O GLN C 1 11.962 110.004 149.798 1.00 78.57 ATOM 4 N LEU C 2 11.432 108.353 151.255 1.00 65.97 ATOM 5 CA LEU C 2 12.820 107.939 151.433 1.00 60.19 ATOM 6 C LEU C 2 13.357 107.213 150.208 1.00 60.96 ATOM 7 O LEU C 2 14.571 107.219 149.972 1.00 57.21 ATOM 8 CB LEU C 2 12.959 107.040 152.664 1.00 67.66 ATOM 9 CG LEU C 2 12.985 107.753 154.023 1.00 77.49 ATOM 10 CD1 LEU C 2 12.307 106.891 155.080 1.00 83.03 ATOM 11 CD2 LEU C 2 14.411 108.125 154.430 1.00 69.44 ATOM 12 N GLU C 3 12.484 106.566 149.431 1.00 48.89 ATOM 13 CA GLU C 3 12.960 105.863 148.246 1.00 49.07 ATOM 14 C GLU C 3 13.466 106.852 147.204 1.00 50.73 ATOM 15 O GLU C 3 14.475 106.598 146.536 1.00 44.18 ATOM 16 CB GLU C 3 11.856 104.980 147.666 1.00 52.96 ATOM 17 CG GLU C 3 11.335 103.890 148.599 1.00 69.59 ATOM 18 CD GLU C 3 10.388 102.913 147.890 1.00 85.47 ATOM 19 OE1 GLU C 3 9.489 103.378 147.150 1.00 89.32 ATOM 20 OE2 GLU C 3 10.539 101.681 148.077 1.00 89.37 ATOM 21 N ASP C 4 12.791 107.995 147.073 1.00 44.55 ATOM 22 CA ASP C 4 13.274 109.041 146.176 1.00 49.96 ATOM 23 C ASP C 4 14.649 109.533 146.607 1.00 46.87 ATOM 24 O ASP C 4 15.532 109.754 145.768 1.00 41.00 ATOM 25 CB ASP C 4 12.273 110.193 146.137 1.00 68.37 ATOM 26 CG ASP C 4 12.711 111.304 145.199 1.00103.58 ATOM 27 OD1 ASP C 4 12.781 111.045 143.975 1.00115.40 ATOM 28 OD2 ASP C 4 12.973 112.434 145.678 1.00113.45 ATOM 29 N LYS C 5 14.857 109.673 147.919 1.00 39.50 ATOM 30 CA LYS C 5 16.136 110.167 148.426 1.00 47.16 ATOM 31 C LYS C 5 17.267 109.199 148.102 1.00 42.96 ATOM 32 O LYS C 5 18.335 109.615 147.634 1.00 48.32 ATOM 33 CB LYS C 5 16.047 110.408 149.934 1.00 50.64 ATOM 34 CG LYS C 5 14.983 111.441 150.340 1.00 62.02 ATOM 35 CD LYS C 5 15.257 112.800 149.709 1.00 70.89 ATOM 36 CE LYS C 5 14.073 113.756 149.878 1.00 83.61 ATOM 37 NZ LYS C 5 13.595 113.870 151.288 1.00 81.04 ATOM 38 N VAL C 6 17.036 107.901 148.302 1.00 36.73 ATOM 39 CA VAL C 6 18.060 106.920 147.965 1.00 39.59 ATOM 40 C VAL C 6 18.343 106.949 146.465 1.00 41.30 ATOM 41 O VAL C 6 19.505 106.899 146.035 1.00 42.15 ATOM 42 CB VAL C 6 17.636 105.526 148.473 1.00 43.60 ATOM 43 CG1 VAL C 6 18.508 104.439 147.883 1.00 46.38 ATOM 44 CG2 VAL C 6 17.706 105.482 149.986 1.00 48.28 ATOM 45 N GLU C 7 17.291 107.046 145.643 1.00 37.04 ATOM 46 CA GLU C 7 17.484 107.128 144.194 1.00 37.83 ATOM 47 C GLU C 7 18.394 108.286 143.821 1.00 40.97 ATOM 48 O GLU C 7 19.273 108.147 142.963 1.00 48.86 ATOM 49 CB GLU C 7 16.139 107.291 143.491 1.00 39.69 ATOM 50 CG GLU C 7 15.685 106.056 142.810 1.00 44.62 ATOM 51 CD GLU C 7 14.342 106.214 142.146 1.00 45.23 ATOM 52 OE1 GLU C 7 13.848 107.356 141.996 1.00 51.60 ATOM 53 OE2 GLU C 7 13.777 105.175 141.769 1.00 50.49 ATOM 54 N GLU C 8 18.182 109.446 144.436 1.00 38.48 ATOM 55 CA GLU C 8 19.009 110.605 144.120 1.00 42.13 ATOM 56 C GLU C 8 20.441 110.386 144.579 1.00 38.26 ATOM 57 O GLU C 8 21.381 110.662 143.829 1.00 38.74 ATOM 58 CB GLU C 8 18.412 111.869 144.754 1.00 45.36 ATOM 59 CG GLU C 8 17.077 112.288 144.115 1.00 73.07 ATOM 60 CD GLU C 8 16.410 113.483 144.798 1.00 94.26 ATOM 61 OE1 GLU C 8 15.505 114.088 144.178 1.00101.06 ATOM 62 OE2 GLU C 8 16.779 113.817 145.948 1.00100.77 ATOM 63 N LEU C 9 20.626 109.857 145.796 1.00 37.36 ATOM 64 CA LEU C 9 21.975 109.588 146.277 1.00 37.19 ATOM 65 C LEU C 9 22.684 108.533 145.418 1.00 37.17 ATOM 66 O LEU C 9 23.900 108.623 145.218 1.00 40.47 ATOM 67 CB LEU C 9 21.928 109.192 147.754 1.00 36.98 ATOM 68 CG LEU C 9 21.523 110.351 148.680 1.00 39.80 ATOM 69 CD1 LEU C 9 21.304 109.921 150.133 1.00 38.81 ATOM 70 CD2 LEU C 9 22.592 111.439 148.623 1.00 39.40 ATOM 71 N LEU C 10 21.955 107.546 144.887 1.00 36.22 ATOM 72 CA LEU C 10 22.592 106.530 144.051 1.00 36.20 ATOM 73 C LEU C 10 22.983 107.110 142.703 1.00 42.59 ATOM 74 O LEU C 10 24.095 106.876 142.211 1.00 39.07 ATOM 75 CB LEU C 10 21.657 105.338 143.834 1.00 41.84 ATOM 76 CG LEU C 10 21.344 104.419 145.015 1.00 44.91 ATOM 77 CD1 LEU C 10 20.227 103.457 144.603 1.00 40.94 ATOM 78 CD2 LEU C 10 22.597 103.667 145.442 1.00 40.16 ATOM 79 N SER C 11 22.058 107.854 142.078 1.00 39.84 ATOM 80 CA SER C 11 22.374 108.561 140.843 1.00 39.14 ATOM 81 C SER C 11 23.646 109.388 141.007 1.00 42.46 ATOM 82 O SER C 11 24.540 109.354 140.158 1.00 43.11 ATOM 83 CB SER C 11 21.198 109.444 140.440 1.00 40.43 ATOM 84 OG SER C 11 21.486 110.132 139.244 1.00 48.29 ATOM 85 N LYS C 12 23.751 110.113 142.121 1.00 39.37 ATOM 86 CA LYS C 12 24.957 110.884 142.403 1.00 41.31 ATOM 87 C LYS C 12 26.167 109.970 142.574 1.00 44.53 ATOM 88 O LYS C 12 27.265 110.266 142.079 1.00 41.39 ATOM 89 CB LYS C 12 24.713 111.724 143.656 1.00 40.59 ATOM 90 CG LYS C 12 25.883 112.573 144.104 1.00 55.34 ATOM 91 CD LYS C 12 25.392 113.903 144.655 1.00 51.92 ATOM 92 CE LYS C 12 26.560 114.816 145.035 1.00 63.24 ATOM 93 NZ LYS C 12 27.041 114.596 146.428 1.00 55.57 ATOM 94 N ASN C 13 25.979 108.841 143.258 1.00 46.88 ATOM 95 CA ASN C 13 27.086 107.922 143.498 1.00 41.96 ATOM 96 C ASN C 13 27.653 107.398 142.188 1.00 45.96 ATOM 97 O ASN C 13 28.870 107.397 141.989 1.00 41.62 ATOM 98 CB ASN C 13 26.618 106.767 144.380 1.00 44.37 ATOM 99 CG ASN C 13 27.736 105.820 144.737 1.00 44.69 ATOM 100 OD1 ASN C 13 28.474 106.042 145.702 1.00 51.42 ATOM 101 ND2 ASN C 13 27.859 104.747 143.979 1.00 39.31 ATOM 102 N TYR C 14 26.778 106.985 141.268 1.00 39.33 ATOM 103 CA TYR C 14 27.233 106.425 140.000 1.00 42.04 ATOM 104 C TYR C 14 27.953 107.468 139.166 1.00 48.61 ATOM 105 O TYR C 14 28.909 107.149 138.457 1.00 48.80 ATOM 106 CB TYR C 14 26.044 105.882 139.202 1.00 41.51 ATOM 107 CG TYR C 14 25.153 104.933 139.970 1.00 44.19 ATOM 108 CD1 TYR C 14 25.642 104.200 141.036 1.00 43.86 ATOM 109 CD2 TYR C 14 23.822 104.768 139.620 1.00 44.35 ATOM 110 CE1 TYR C 14 24.835 103.332 141.747 1.00 38.95 ATOM 111 CE2 TYR C 14 23.005 103.907 140.330 1.00 41.62 ATOM 112 CZ TYR C 14 23.521 103.182 141.370 1.00 41.49 ATOM 113 OH TYR C 14 22.712 102.321 142.053 1.00 46.21 ATOM 114 N HIS C 15 27.470 108.710 139.192 1.00 50.31 ATOM 115 CA HIS C 15 28.153 109.775 138.472 1.00 47.30 ATOM 116 C HIS C 15 29.565 109.979 139.021 1.00 51.84 ATOM 117 O HIS C 15 30.525 110.136 138.252 1.00 51.18 ATOM 118 CB HIS C 15 27.323 111.054 138.562 1.00 55.24 ATOM 119 CG HIS C 15 27.885 112.206 137.789 1.00 78.09 ATOM 120 ND1 HIS C 15 27.498 113.509 138.015 1.00 82.75 ATOM 121 CD2 HIS C 15 28.792 112.252 136.784 1.00 87.38 ATOM 122 CE1 HIS C 15 28.147 114.310 137.190 1.00 87.41 ATOM 123 NE2 HIS C 15 28.939 113.572 136.432 1.00 89.44 ATOM 124 N LEU C 16 29.719 109.922 140.349 1.00 44.22 ATOM 125 CA LEU C 16 31.030 110.123 140.966 1.00 45.89 ATOM 126 C LEU C 16 31.957 108.936 140.736 1.00 46.45 ATOM 127 O LEU C 16 33.168 109.123 140.572 1.00 55.13 ATOM 128 CB LEU C 16 30.884 110.376 142.474 1.00 45.72 ATOM 129 CG LEU C 16 30.231 111.689 142.932 1.00 59.70 ATOM 130 CD1 LEU C 16 29.925 111.684 144.460 1.00 45.79 ATOM 131 CD2 LEU C 16 31.087 112.902 142.550 1.00 54.81 ATOM 132 N GLU C 17 31.426 107.707 140.769 1.00 53.63 ATOM 133 CA GLU C 17 32.241 106.537 140.430 1.00 54.37 ATOM 134 C GLU C 17 32.864 106.701 139.052 1.00 50.39 ATOM 135 O GLU C 17 34.072 106.516 138.866 1.00 49.39 ATOM 136 CB GLU C 17 31.395 105.262 140.447 1.00 56.68 ATOM 137 CG GLU C 17 31.137 104.603 141.788 1.00 77.22 ATOM 138 CD GLU C 17 30.280 103.335 141.642 1.00 87.28 ATOM 139 OE1 GLU C 17 30.110 102.846 140.494 1.00 87.54 ATOM 140 OE2 GLU C 17 29.768 102.837 142.671 1.00 83.20 ATOM 141 N ASN C 18 32.042 107.041 138.064 1.00 48.79 ATOM 142 CA ASN C 18 32.551 107.126 136.706 1.00 56.80 ATOM 143 C ASN C 18 33.531 108.282 136.546 1.00 58.85 ATOM 144 O ASN C 18 34.504 108.170 135.791 1.00 62.48 ATOM 145 CB ASN C 18 31.391 107.258 135.726 1.00 47.84 ATOM 146 CG ASN C 18 31.854 107.207 134.290 1.00 49.95 ATOM 147 OD1 ASN C 18 31.997 108.237 133.626 1.00 55.28 ATOM 148 ND2 ASN C 18 32.144 106.002 133.820 1.00 54.28 ATOM 149 N GLU C 19 33.297 109.387 137.254 1.00 60.22 ATOM 150 CA GLU C 19 34.204 110.525 137.177 1.00 67.08 ATOM 151 C GLU C 19 35.560 110.188 137.784 1.00 65.84 ATOM 152 O GLU C 19 36.603 110.577 137.241 1.00 67.09 ATOM 153 CB GLU C 19 33.575 111.730 137.875 1.00 71.56 ATOM 154 CG GLU C 19 34.456 112.961 137.925 1.00 90.65 ATOM 155 CD GLU C 19 33.688 114.210 138.334 1.00101.69 ATOM 156 OE1 GLU C 19 32.590 114.071 138.921 1.00 98.86 ATOM 157 OE2 GLU C 19 34.191 115.329 138.077 1.00107.20 ATOM 158 N VAL C 20 35.567 109.462 138.906 1.00 60.48 ATOM 159 CA VAL C 20 36.831 109.036 139.497 1.00 73.89 ATOM 160 C VAL C 20 37.533 108.052 138.576 1.00 76.88 ATOM 161 O VAL C 20 38.743 108.149 138.341 1.00 76.46 ATOM 162 CB VAL C 20 36.609 108.429 140.893 1.00 68.16 ATOM 163 CG1 VAL C 20 37.938 107.915 141.446 1.00 66.11 ATOM 164 CG2 VAL C 20 36.010 109.457 141.833 1.00 67.47 ATOM 165 N GLU C 21 36.783 107.077 138.060 1.00 69.53 ATOM 166 CA GLU C 21 37.355 106.091 137.148 1.00 75.94 ATOM 167 C GLU C 21 38.024 106.771 135.963 1.00 76.31 ATOM 168 O GLU C 21 39.166 106.456 135.615 1.00 84.79 ATOM 169 CB GLU C 21 36.271 105.124 136.665 1.00 81.30 ATOM 170 CG GLU C 21 36.136 103.874 137.513 1.00 94.53 ATOM 171 CD GLU C 21 34.769 103.204 137.377 1.00102.57 ATOM 172 OE1 GLU C 21 34.211 102.780 138.416 1.00101.07 ATOM 173 OE2 GLU C 21 34.260 103.092 136.234 1.00104.49 ATOM 174 N ARG C 22 37.324 107.716 135.334 1.00 77.70 ATOM 175 CA ARG C 22 37.914 108.470 134.235 1.00 82.00 ATOM 176 C ARG C 22 39.156 109.227 134.690 1.00 87.58 ATOM 177 O ARG C 22 40.164 109.273 133.973 1.00 95.15 ATOM 178 CB ARG C 22 36.885 109.437 133.653 1.00 88.41 ATOM 179 CG ARG C 22 37.496 110.720 133.104 1.00 99.57 ATOM 180 CD ARG C 22 36.457 111.620 132.464 1.00104.61 ATOM 181 NE ARG C 22 35.895 112.574 133.415 1.00107.76 ATOM 182 CZ ARG C 22 35.712 113.863 133.155 1.00109.81 ATOM 183 NH1 ARG C 22 35.190 114.661 134.078 1.00110.06 ATOM 184 NH2 ARG C 22 36.042 114.351 131.967 1.00111.03 ATOM 185 N LEU C 23 39.109 109.818 135.884 1.00 81.79 ATOM 186 CA LEU C 23 40.244 110.597 136.359 1.00 81.00 ATOM 187 C LEU C 23 41.396 109.718 136.834 1.00 83.01 ATOM 188 O LEU C 23 42.558 110.114 136.697 1.00 86.39 ATOM 189 CB LEU C 23 39.792 111.548 137.464 1.00 82.00 ATOM 190 CG LEU C 23 39.479 112.956 136.954 1.00 81.17 ATOM 191 CD1 LEU C 23 38.510 113.695 137.878 1.00 71.06 ATOM 192 CD2 LEU C 23 40.771 113.735 136.785 1.00 91.26 ATOM 193 N LYS C 24 41.109 108.529 137.371 1.00 79.11 ATOM 194 CA LYS C 24 42.179 107.610 137.754 1.00 81.60 ATOM 195 C LYS C 24 42.930 107.084 136.532 1.00 87.88 ATOM 196 O LYS C 24 44.163 107.160 136.472 1.00 93.14 ATOM 197 CB LYS C 24 41.611 106.450 138.570 1.00 78.23 ATOM 198 CG LYS C 24 41.793 106.596 140.068 1.00 81.34 ATOM 199 CD LYS C 24 41.237 105.396 140.820 1.00 84.75 ATOM 200 CE LYS C 24 41.610 105.461 142.292 1.00 91.63 ATOM 201 NZ LYS C 24 40.980 104.370 143.077 1.00 95.29 ATOM 202 N LYS C 25 42.202 106.524 135.557 1.00 89.63 ATOM 203 CA LYS C 25 42.844 105.997 134.354 1.00 89.50 ATOM 204 C LYS C 25 43.582 107.088 133.592 1.00101.45 ATOM 205 O LYS C 25 44.625 106.821 132.981 1.00104.26 ATOM 206 CB LYS C 25 41.807 105.328 133.447 1.00 76.19 ATOM 207 N LEU C 26 43.068 108.320 133.629 1.00108.34 ATOM 208 CA LEU C 26 43.721 109.426 132.936 1.00118.15 ATOM 209 C LEU C 26 45.084 109.728 133.549 1.00132.72 ATOM 210 O LEU C 26 46.112 109.674 132.865 1.00142.54 ATOM 211 CB LEU C 26 42.826 110.668 132.966 1.00116.14 ATOM 212 CG LEU C 26 43.362 111.943 132.302 1.00119.97 ATOM 213 CD1 LEU C 26 43.486 111.767 130.792 1.00122.59 ATOM 214 CD2 LEU C 26 42.491 113.151 132.633 1.00118.29 ATOM 215 N VAL C 27 45.114 110.047 134.846 1.00133.61 ATOM 216 CA VAL C 27 46.380 110.441 135.462 1.00132.40 ATOM 217 C VAL C 27 47.267 109.227 135.751 1.00132.84 ATOM 218 O VAL C 27 48.495 109.353 135.801 1.00136.00 ATOM 219 CB VAL C 27 46.130 111.276 136.735 1.00123.83 ATOM 220 CG1 VAL C 27 45.192 112.445 136.438 1.00117.56 ATOM 221 CG2 VAL C 27 45.583 110.411 137.865 1.00116.55 ATOM 222 N GLY C 28 46.683 108.046 135.928 1.00128.34 ATOM 223 CA GLY C 28 47.459 106.859 136.234 1.00122.50 ATOM 224 C GLY C 28 47.554 105.895 135.071 1.00119.99 ATOM 225 O GLY C 28 48.612 105.324 134.815 1.00126.16 ATOM 226 S SO4 C 202 31.666 115.361 134.418 1.00124.36 ATOM 227 O1 SO4 C 202 31.312 113.956 134.597 1.00128.49 ATOM 228 O2 SO4 C 202 31.709 115.676 132.989 1.00123.75 ATOM 229 O3 SO4 C 202 32.977 115.604 135.013 1.00129.49 ATOM 230 O4 SO4 C 202 30.678 116.201 135.089 1.00120.47 TER