HEADER TRANSCRIPTION 31-DEC-69 7BEF TITLE Structures of class II bacterial transcription complexes COMPND MOL_ID: 5; COMPND 2 MOLECULE: RNA polymerase sigma factor RpoD; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 7BEF F 1 613 UNP P00579 RPOD_ECOLI 1 613 SEQRES 1 F 32 ARG THR ILE ARG ILE PRO VAL HIS MET ILE GLU THR ILE SEQRES 2 F 32 ASN LYS LEU ASN ARG ILE SER ARG GLN MET LEU GLN GLU SEQRES 3 F 32 MET GLY ARG GLU PRO THR ATOM 1 N ARG F 448 151.469 170.901 186.573 1.00164.27 ATOM 2 CA ARG F 448 151.128 171.589 185.334 1.00164.27 ATOM 3 C ARG F 448 152.393 172.093 184.649 1.00164.27 ATOM 4 O ARG F 448 153.381 172.411 185.319 1.00164.27 ATOM 5 CB ARG F 448 150.163 172.746 185.608 1.00164.27 ATOM 6 CG ARG F 448 149.584 173.388 184.355 1.00164.27 ATOM 7 CD ARG F 448 148.545 174.441 184.702 1.00164.27 ATOM 8 NE ARG F 448 147.369 173.859 185.342 1.00164.27 ATOM 9 CZ ARG F 448 146.290 173.444 184.686 1.00164.27 ATOM 10 NH1 ARG F 448 146.235 173.546 183.365 1.00164.27 ATOM 11 NH2 ARG F 448 145.266 172.928 185.351 1.00164.27 ATOM 12 N THR F 449 152.374 172.159 183.316 1.00188.60 ATOM 13 CA THR F 449 153.537 172.635 182.575 1.00188.60 ATOM 14 C THR F 449 153.824 174.099 182.890 1.00188.60 ATOM 15 O THR F 449 154.933 174.455 183.305 1.00188.60 ATOM 16 CB THR F 449 153.318 172.438 181.074 1.00188.60 ATOM 17 OG1 THR F 449 153.112 171.047 180.797 1.00188.60 ATOM 18 CG2 THR F 449 154.525 172.932 180.291 1.00188.60 ATOM 19 N ILE F 450 152.834 174.960 182.699 1.00176.92 ATOM 20 CA ILE F 450 152.962 176.379 183.006 1.00176.92 ATOM 21 C ILE F 450 152.444 176.627 184.414 1.00176.92 ATOM 22 O ILE F 450 151.562 175.918 184.910 1.00176.92 ATOM 23 CB ILE F 450 152.216 177.243 181.967 1.00176.92 ATOM 24 CG1 ILE F 450 150.730 176.878 181.933 1.00176.92 ATOM 25 CG2 ILE F 450 152.839 177.076 180.590 1.00176.92 ATOM 26 CD1 ILE F 450 149.929 177.675 180.926 1.00176.92 ATOM 27 N ARG F 451 152.999 177.642 185.071 1.00176.95 ATOM 28 CA ARG F 451 152.603 177.990 186.430 1.00176.95 ATOM 29 C ARG F 451 151.382 178.900 186.386 1.00176.95 ATOM 30 O ARG F 451 151.424 179.978 185.781 1.00176.95 ATOM 31 CB ARG F 451 153.751 178.666 187.179 1.00176.95 ATOM 32 CG ARG F 451 153.335 179.267 188.513 1.00176.95 ATOM 33 CD ARG F 451 154.534 179.607 189.383 1.00176.95 ATOM 34 NE ARG F 451 155.233 178.409 189.841 1.00176.95 ATOM 35 CZ ARG F 451 156.207 178.412 190.746 1.00176.95 ATOM 36 NH1 ARG F 451 156.600 179.553 191.296 1.00176.95 ATOM 37 NH2 ARG F 451 156.786 177.275 191.103 1.00176.95 ATOM 38 N ILE F 452 150.301 178.465 187.025 1.00162.60 ATOM 39 CA ILE F 452 149.066 179.240 187.097 1.00162.60 ATOM 40 C ILE F 452 148.834 179.633 188.551 1.00162.60 ATOM 41 O ILE F 452 148.924 178.778 189.443 1.00162.60 ATOM 42 CB ILE F 452 147.878 178.447 186.529 1.00162.60 ATOM 43 CG1 ILE F 452 148.139 178.070 185.070 1.00162.60 ATOM 44 CG2 ILE F 452 146.589 179.245 186.647 1.00162.60 ATOM 45 CD1 ILE F 452 148.340 179.260 184.157 1.00162.60 ATOM 46 N PRO F 453 148.549 180.902 188.840 1.00152.85 ATOM 47 CA PRO F 453 148.347 181.320 190.233 1.00152.85 ATOM 48 C PRO F 453 147.114 180.669 190.843 1.00152.85 ATOM 49 O PRO F 453 146.247 180.123 190.158 1.00152.85 ATOM 50 CB PRO F 453 148.188 182.840 190.128 1.00152.85 ATOM 51 CG PRO F 453 147.739 183.073 188.722 1.00152.85 ATOM 52 CD PRO F 453 148.435 182.031 187.903 1.00152.85 ATOM 53 N VAL F 454 147.047 180.739 192.175 1.00163.66 ATOM 54 CA VAL F 454 145.942 180.119 192.900 1.00163.66 ATOM 55 C VAL F 454 144.634 180.844 192.610 1.00163.66 ATOM 56 O VAL F 454 143.571 180.219 192.509 1.00163.66 ATOM 57 CB VAL F 454 146.251 180.085 194.408 1.00163.66 ATOM 58 CG1 VAL F 454 145.158 179.341 195.161 1.00163.66 ATOM 59 CG2 VAL F 454 147.609 179.446 194.657 1.00163.66 ATOM 60 N HIS F 455 144.687 182.171 192.469 1.00158.67 ATOM 61 CA HIS F 455 143.476 182.938 192.191 1.00158.67 ATOM 62 C HIS F 455 142.900 182.573 190.828 1.00158.67 ATOM 63 O HIS F 455 141.681 182.418 190.675 1.00158.67 ATOM 64 CB HIS F 455 143.778 184.435 192.268 1.00158.67 ATOM 65 CG HIS F 455 144.427 184.855 193.550 1.00158.67 ATOM 66 ND1 HIS F 455 143.712 185.347 194.621 1.00158.67 ATOM 67 CD2 HIS F 455 145.726 184.853 193.934 1.00158.67 ATOM 68 CE1 HIS F 455 144.543 185.632 195.608 1.00158.67 ATOM 69 NE2 HIS F 455 145.770 185.342 195.217 1.00158.67 ATOM 70 N MET F 456 143.766 182.431 189.822 1.00143.17 ATOM 71 CA MET F 456 143.299 182.031 188.499 1.00143.17 ATOM 72 C MET F 456 142.719 180.623 188.525 1.00143.17 ATOM 73 O MET F 456 141.717 180.346 187.855 1.00143.17 ATOM 74 CB MET F 456 144.440 182.127 187.487 1.00143.17 ATOM 75 CG MET F 456 144.004 181.962 186.041 1.00143.17 ATOM 76 SD MET F 456 142.876 183.264 185.510 1.00143.17 ATOM 77 CE MET F 456 143.886 184.718 185.785 1.00143.17 ATOM 78 N ILE F 457 143.328 179.723 189.301 1.00156.80 ATOM 79 CA ILE F 457 142.798 178.368 189.429 1.00156.80 ATOM 80 C ILE F 457 141.416 178.396 190.070 1.00156.80 ATOM 81 O ILE F 457 140.500 177.686 189.637 1.00156.80 ATOM 82 CB ILE F 457 143.777 177.484 190.225 1.00156.80 ATOM 83 CG1 ILE F 457 145.033 177.202 189.400 1.00156.80 ATOM 84 CG2 ILE F 457 143.111 176.180 190.641 1.00156.80 ATOM 85 CD1 ILE F 457 144.767 176.407 188.139 1.00156.80 ATOM 86 N GLU F 458 141.238 179.225 191.101 1.00168.27 ATOM 87 CA GLU F 458 139.934 179.324 191.751 1.00168.27 ATOM 88 C GLU F 458 138.888 179.902 190.806 1.00168.27 ATOM 89 O GLU F 458 137.739 179.445 190.785 1.00168.27 ATOM 90 CB GLU F 458 140.040 180.171 193.020 1.00168.27 ATOM 91 CG GLU F 458 140.876 179.541 194.125 1.00168.27 ATOM 92 CD GLU F 458 140.234 178.299 194.714 1.00168.27 ATOM 93 OE1 GLU F 458 138.998 178.154 194.605 1.00168.27 ATOM 94 OE2 GLU F 458 140.967 177.465 195.286 1.00168.27 ATOM 95 N THR F 459 139.267 180.907 190.012 1.00147.15 ATOM 96 CA THR F 459 138.326 181.468 189.046 1.00147.15 ATOM 97 C THR F 459 137.947 180.442 187.984 1.00147.15 ATOM 98 O THR F 459 136.778 180.353 187.588 1.00147.15 ATOM 99 CB THR F 459 138.911 182.721 188.394 1.00147.15 ATOM 100 OG1 THR F 459 140.179 182.410 187.803 1.00147.15 ATOM 101 CG2 THR F 459 139.086 183.830 189.422 1.00147.15 ATOM 102 N ILE F 460 138.920 179.658 187.514 1.00147.29 ATOM 103 CA ILE F 460 138.627 178.612 186.536 1.00147.29 ATOM 104 C ILE F 460 137.699 177.565 187.138 1.00147.29 ATOM 105 O ILE F 460 136.770 177.085 186.477 1.00147.29 ATOM 106 CB ILE F 460 139.935 177.985 186.016 1.00147.29 ATOM 107 CG1 ILE F 460 140.710 178.994 185.166 1.00147.29 ATOM 108 CG2 ILE F 460 139.648 176.725 185.212 1.00147.29 ATOM 109 CD1 ILE F 460 142.016 178.457 184.621 1.00147.29 ATOM 110 N ASN F 461 137.927 177.202 188.403 1.00172.87 ATOM 111 CA ASN F 461 137.063 176.224 189.057 1.00172.87 ATOM 112 C ASN F 461 135.643 176.755 189.207 1.00172.87 ATOM 113 O ASN F 461 134.671 176.018 189.000 1.00172.87 ATOM 114 CB ASN F 461 137.639 175.839 190.420 1.00172.87 ATOM 115 CG ASN F 461 138.991 175.161 190.311 1.00172.87 ATOM 116 OD1 ASN F 461 139.325 174.577 189.280 1.00172.87 ATOM 117 ND2 ASN F 461 139.777 175.235 191.378 1.00172.87 ATOM 118 N LYS F 462 135.501 178.034 189.563 1.00149.45 ATOM 119 CA LYS F 462 134.171 178.625 189.672 1.00149.45 ATOM 120 C LYS F 462 133.473 178.661 188.317 1.00149.45 ATOM 121 O LYS F 462 132.279 178.347 188.215 1.00149.45 ATOM 122 CB LYS F 462 134.264 180.031 190.265 1.00149.45 ATOM 123 CG LYS F 462 134.727 180.068 191.712 1.00149.45 ATOM 124 CD LYS F 462 134.820 181.495 192.226 1.00149.45 ATOM 125 CE LYS F 462 133.473 182.196 192.160 1.00149.45 ATOM 126 NZ LYS F 462 132.445 181.499 192.981 1.00149.45 ATOM 127 N LEU F 463 134.202 179.039 187.264 1.00143.40 ATOM 128 CA LEU F 463 133.613 179.060 185.929 1.00143.40 ATOM 129 C LEU F 463 133.194 177.663 185.488 1.00143.40 ATOM 130 O LEU F 463 132.151 177.494 184.848 1.00143.40 ATOM 131 CB LEU F 463 134.594 179.670 184.928 1.00143.40 ATOM 132 CG LEU F 463 134.876 181.166 185.082 1.00143.40 ATOM 133 CD1 LEU F 463 135.845 181.644 184.013 1.00143.40 ATOM 134 CD2 LEU F 463 133.583 181.965 185.034 1.00143.40 ATOM 135 N ASN F 464 133.985 176.646 185.837 1.00149.84 ATOM 136 CA ASN F 464 133.624 175.277 185.480 1.00149.84 ATOM 137 C ASN F 464 132.398 174.809 186.255 1.00149.84 ATOM 138 O ASN F 464 131.524 174.132 185.699 1.00149.84 ATOM 139 CB ASN F 464 134.806 174.339 185.726 1.00149.84 ATOM 140 CG ASN F 464 135.979 174.628 184.810 1.00149.84 ATOM 141 OD1 ASN F 464 135.804 175.106 183.689 1.00149.84 ATOM 142 ND2 ASN F 464 137.185 174.337 185.284 1.00149.84 ATOM 143 N ARG F 465 132.315 175.158 187.542 1.00154.79 ATOM 144 CA ARG F 465 131.147 174.781 188.331 1.00154.79 ATOM 145 C ARG F 465 129.889 175.474 187.821 1.00154.79 ATOM 146 O ARG F 465 128.791 174.910 187.887 1.00154.79 ATOM 147 CB ARG F 465 131.378 175.104 189.808 1.00154.79 ATOM 148 CG ARG F 465 132.426 174.230 190.477 1.00154.79 ATOM 149 CD ARG F 465 132.514 174.512 191.968 1.00154.79 ATOM 150 NE ARG F 465 132.862 175.902 192.245 1.00154.79 ATOM 151 CZ ARG F 465 133.002 176.407 193.466 1.00154.79 ATOM 152 NH1 ARG F 465 132.824 175.635 194.529 1.00154.79 ATOM 153 NH2 ARG F 465 133.320 177.684 193.625 1.00154.79 ATOM 154 N ILE F 466 130.029 176.699 187.310 1.00155.85 ATOM 155 CA ILE F 466 128.877 177.387 186.734 1.00155.85 ATOM 156 C ILE F 466 128.497 176.765 185.394 1.00155.85 ATOM 157 O ILE F 466 127.310 176.578 185.093 1.00155.85 ATOM 158 CB ILE F 466 129.165 178.894 186.602 1.00155.85 ATOM 159 CG1 ILE F 466 129.311 179.531 187.985 1.00155.85 ATOM 160 CG2 ILE F 466 128.064 179.586 185.812 1.00155.85 ATOM 161 CD1 ILE F 466 129.585 181.017 187.948 1.00155.85 ATOM 162 N SER F 467 129.495 176.427 184.572 1.00167.70 ATOM 163 CA SER F 467 129.222 175.823 183.273 1.00167.70 ATOM 164 C SER F 467 128.586 174.448 183.414 1.00167.70 ATOM 165 O SER F 467 127.791 174.045 182.559 1.00167.70 ATOM 166 CB SER F 467 130.511 175.731 182.456 1.00167.70 ATOM 167 OG SER F 467 131.075 177.014 182.245 1.00167.70 ATOM 168 N ARG F 468 128.895 173.756 184.513 1.00180.10 ATOM 169 CA ARG F 468 128.313 172.442 184.797 1.00180.10 ATOM 170 C ARG F 468 126.796 172.543 184.995 1.00180.10 ATOM 171 O ARG F 468 126.040 171.723 184.474 1.00180.10 ATOM 172 CB ARG F 468 128.966 171.822 186.033 1.00180.10 ATOM 173 CG ARG F 468 130.465 171.610 185.903 1.00180.10 ATOM 174 CD ARG F 468 131.057 171.048 187.185 1.00180.10 ATOM 175 NE ARG F 468 130.461 169.765 187.546 1.00180.10 ATOM 176 CZ ARG F 468 130.790 169.067 188.628 1.00180.10 ATOM 177 NH1 ARG F 468 130.196 167.908 188.878 1.00180.10 ATOM 178 NH2 ARG F 468 131.712 169.528 189.462 1.00180.10 ATOM 179 N GLN F 469 126.358 173.551 185.749 1.00158.01 ATOM 180 CA GLN F 469 124.935 173.804 185.948 1.00158.01 ATOM 181 C GLN F 469 124.288 174.348 184.681 1.00158.01 ATOM 182 O GLN F 469 123.140 174.011 184.368 1.00158.01 ATOM 183 CB GLN F 469 124.733 174.773 187.114 1.00158.01 ATOM 184 CG GLN F 469 125.266 174.265 188.443 1.00158.01 ATOM 185 CD GLN F 469 125.036 175.245 189.576 1.00158.01 ATOM 186 OE1 GLN F 469 124.473 176.321 189.376 1.00158.01 ATOM 187 NE2 GLN F 469 125.471 174.877 190.775 1.00158.01 ATOM 188 N MET F 470 125.011 175.188 183.934 1.00167.54 ATOM 189 CA MET F 470 124.463 175.722 182.690 1.00167.54 ATOM 190 C MET F 470 124.190 174.610 181.684 1.00167.54 ATOM 191 O MET F 470 123.137 174.594 181.034 1.00167.54 ATOM 192 CB MET F 470 125.414 176.761 182.096 1.00167.54 ATOM 193 CG MET F 470 125.513 178.046 182.901 1.00167.54 ATOM 194 SD MET F 470 126.641 179.245 182.164 1.00167.54 ATOM 195 CE MET F 470 125.856 179.516 180.577 1.00167.54 ATOM 196 N LEU F 471 125.124 173.666 181.547 1.00151.34 ATOM 197 CA LEU F 471 124.930 172.556 180.621 1.00151.34 ATOM 198 C LEU F 471 123.866 171.589 181.123 1.00151.34 ATOM 199 O LEU F 471 123.155 170.980 180.316 1.00151.34 ATOM 200 CB LEU F 471 126.258 171.830 180.393 1.00151.34 ATOM 201 CG LEU F 471 126.322 170.751 179.307 1.00151.34 ATOM 202 CD1 LEU F 471 127.670 170.793 178.606 1.00151.34 ATOM 203 CD2 LEU F 471 126.075 169.367 179.889 1.00151.34 ATOM 204 N GLN F 472 123.742 171.430 182.443 1.00145.17 ATOM 205 CA GLN F 472 122.702 170.559 182.980 1.00145.17 ATOM 206 C GLN F 472 121.317 171.158 182.765 1.00145.17 ATOM 207 O GLN F 472 120.347 170.427 182.535 1.00145.17 ATOM 208 CB GLN F 472 122.953 170.299 184.466 1.00145.17 ATOM 209 CG GLN F 472 121.952 169.355 185.116 1.00145.17 ATOM 210 CD GLN F 472 122.050 167.937 184.586 1.00145.17 ATOM 211 OE1 GLN F 472 121.057 167.211 184.539 1.00145.17 ATOM 212 NE2 GLN F 472 123.252 167.533 184.193 1.00145.17 ATOM 213 N GLU F 473 121.206 172.486 182.830 1.00149.93 ATOM 214 CA GLU F 473 119.908 173.131 182.665 1.00149.93 ATOM 215 C GLU F 473 119.528 173.277 181.196 1.00149.93 ATOM 216 O GLU F 473 118.368 173.058 180.829 1.00149.93 ATOM 217 CB GLU F 473 119.913 174.497 183.352 1.00149.93 ATOM 218 CG GLU F 473 118.597 175.250 183.250 1.00149.93 ATOM 219 CD GLU F 473 118.647 176.605 183.929 1.00149.93 ATOM 220 OE1 GLU F 473 119.708 176.953 184.487 1.00149.93 ATOM 221 OE2 GLU F 473 117.624 177.322 183.903 1.00149.93 ATOM 222 N MET F 474 120.485 173.640 180.341 1.00154.81 ATOM 223 CA MET F 474 120.193 173.898 178.936 1.00154.81 ATOM 224 C MET F 474 120.447 172.678 178.055 1.00154.81 ATOM 225 O MET F 474 119.577 172.283 177.272 1.00154.81 ATOM 226 CB MET F 474 121.022 175.087 178.440 1.00154.81 ATOM 227 CG MET F 474 120.811 175.422 176.972 1.00154.81 ATOM 228 SD MET F 474 119.104 175.865 176.600 1.00154.81 ATOM 229 CE MET F 474 119.217 176.200 174.844 1.00154.81 ATOM 230 N GLY F 475 121.625 172.074 178.171 1.00158.99 ATOM 231 CA GLY F 475 122.005 170.963 177.325 1.00158.99 ATOM 232 C GLY F 475 122.956 171.304 176.201 1.00158.99 ATOM 233 O GLY F 475 123.253 170.429 175.379 1.00158.99 ATOM 234 N ARG F 476 123.442 172.539 176.138 1.00150.65 ATOM 235 CA ARG F 476 124.368 172.990 175.112 1.00150.65 ATOM 236 C ARG F 476 125.586 173.616 175.781 1.00150.65 ATOM 237 O ARG F 476 125.559 173.974 176.962 1.00150.65 ATOM 238 CB ARG F 476 123.684 173.987 174.163 1.00150.65 ATOM 239 CG ARG F 476 124.455 174.303 172.888 1.00150.65 ATOM 240 CD ARG F 476 124.842 173.036 172.142 1.00150.65 ATOM 241 NE ARG F 476 123.677 172.246 171.757 1.00150.65 ATOM 242 CZ ARG F 476 123.741 171.100 171.088 1.00150.65 ATOM 243 NH1 ARG F 476 124.918 170.606 170.726 1.00150.65 ATOM 244 NH2 ARG F 476 122.630 170.447 170.779 1.00150.65 ATOM 245 N GLU F 477 126.671 173.729 175.015 1.00183.86 ATOM 246 CA GLU F 477 127.892 174.325 175.530 1.00183.86 ATOM 247 C GLU F 477 127.626 175.755 176.000 1.00183.86 ATOM 248 O GLU F 477 126.916 176.515 175.335 1.00183.86 ATOM 249 CB GLU F 477 128.983 174.319 174.460 1.00183.86 ATOM 250 CG GLU F 477 129.373 172.931 173.973 1.00183.86 ATOM 251 CD GLU F 477 130.083 172.112 175.035 1.00183.86 ATOM 252 OE1 GLU F 477 130.649 172.711 175.974 1.00183.86 ATOM 253 OE2 GLU F 477 130.074 170.868 174.930 1.00183.86 ATOM 254 N PRO F 478 128.178 176.143 177.149 1.00182.17 ATOM 255 CA PRO F 478 127.898 177.481 177.693 1.00182.17 ATOM 256 C PRO F 478 128.497 178.575 176.823 1.00182.17 ATOM 257 O PRO F 478 129.708 178.619 176.592 1.00182.17 ATOM 258 CB PRO F 478 128.546 177.436 179.082 1.00182.17 ATOM 259 CG PRO F 478 129.619 176.406 178.960 1.00182.17 ATOM 260 CD PRO F 478 129.084 175.369 178.014 1.00182.17 ATOM 261 N THR F 479 127.634 179.462 176.337 1.00175.44 ATOM 262 CA THR F 479 128.092 180.583 175.536 1.00175.44 ATOM 263 C THR F 479 128.823 181.596 176.416 1.00175.44 ATOM 264 O THR F 479 128.486 181.769 177.590 1.00175.44 ATOM 265 CB THR F 479 126.917 181.259 174.835 1.00175.44 ATOM 266 OG1 THR F 479 125.985 181.737 175.813 1.00175.44 ATOM 267 CG2 THR F 479 126.213 180.277 173.910 1.00175.44 TER