HEADER TRANSCRIPTION 31-DEC-69 7BEG TITLE Structures of class I bacterial transcription complexes COMPND MOL_ID: 5; COMPND 2 MOLECULE: RNA polymerase sigma factor RpoD; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 7BEG F 1 613 UNP Q0P6L9 Q0P6L9_ECOL 1 613 SEQRES 1 F 32 ARG THR ILE ARG ILE PRO VAL HIS MET ILE GLU THR ILE SEQRES 2 F 32 ASN LYS LEU ASN ARG ILE SER ARG GLN MET LEU GLN GLU SEQRES 3 F 32 MET GLY ARG GLU PRO THR ATOM 1 N ARG F 448 194.852 217.216 228.296 1.00112.37 ATOM 2 CA ARG F 448 194.944 217.194 226.837 1.00112.37 ATOM 3 C ARG F 448 196.422 217.237 226.470 1.00112.37 ATOM 4 O ARG F 448 197.298 217.046 227.320 1.00112.37 ATOM 5 CB ARG F 448 194.204 218.376 226.191 1.00112.37 ATOM 6 CG ARG F 448 192.680 218.316 226.158 1.00112.37 ATOM 7 CD ARG F 448 192.091 219.569 225.535 1.00112.37 ATOM 8 NE ARG F 448 190.632 219.529 225.504 1.00112.37 ATOM 9 CZ ARG F 448 189.853 219.982 226.481 1.00112.37 ATOM 10 NH1 ARG F 448 190.393 220.509 227.572 1.00112.37 ATOM 11 NH2 ARG F 448 188.534 219.908 226.370 1.00112.37 ATOM 12 N THR F 449 196.701 217.494 225.194 1.00104.64 ATOM 13 CA THR F 449 198.039 217.889 224.778 1.00104.64 ATOM 14 C THR F 449 198.248 219.393 224.872 1.00104.64 ATOM 15 O THR F 449 199.382 219.862 224.722 1.00104.64 ATOM 16 CB THR F 449 198.314 217.428 223.343 1.00104.64 ATOM 17 OG1 THR F 449 197.390 218.062 222.450 1.00104.64 ATOM 18 CG2 THR F 449 198.164 215.918 223.229 1.00104.64 ATOM 19 N ILE F 450 197.182 220.150 225.118 1.00105.97 ATOM 20 CA ILE F 450 197.249 221.598 225.225 1.00105.97 ATOM 21 C ILE F 450 196.904 221.999 226.657 1.00105.97 ATOM 22 O ILE F 450 196.574 221.165 227.500 1.00105.97 ATOM 23 CB ILE F 450 196.321 222.293 224.211 1.00105.97 ATOM 24 CG1 ILE F 450 194.860 221.946 224.499 1.00105.97 ATOM 25 CG2 ILE F 450 196.677 221.877 222.794 1.00105.97 ATOM 26 CD1 ILE F 450 193.873 222.740 223.674 1.00105.97 ATOM 27 N ARG F 451 196.982 223.300 226.928 1.00116.52 ATOM 28 CA ARG F 451 196.754 223.839 228.262 1.00116.52 ATOM 29 C ARG F 451 195.418 224.570 228.280 1.00116.52 ATOM 30 O ARG F 451 195.225 225.537 227.535 1.00116.52 ATOM 31 CB ARG F 451 197.899 224.777 228.672 1.00116.52 ATOM 32 CG ARG F 451 197.957 225.136 230.159 1.00116.52 ATOM 33 CD ARG F 451 197.308 226.477 230.490 1.00116.52 ATOM 34 NE ARG F 451 197.496 226.836 231.893 1.00116.52 ATOM 35 CZ ARG F 451 196.716 226.418 232.886 1.00116.52 ATOM 36 NH1 ARG F 451 195.685 225.622 232.638 1.00116.52 ATOM 37 NH2 ARG F 451 196.967 226.797 234.132 1.00116.52 ATOM 38 N ILE F 452 194.505 224.106 229.126 1.00115.62 ATOM 39 CA ILE F 452 193.180 224.692 229.282 1.00115.62 ATOM 40 C ILE F 452 193.000 225.035 230.758 1.00115.62 ATOM 41 O ILE F 452 193.296 224.200 231.613 1.00115.62 ATOM 42 CB ILE F 452 192.060 223.749 228.808 1.00115.62 ATOM 43 CG1 ILE F 452 192.229 223.417 227.325 1.00115.62 ATOM 44 CG2 ILE F 452 190.685 224.363 229.030 1.00115.62 ATOM 45 CD1 ILE F 452 192.137 224.627 226.418 1.00115.62 ATOM 46 N PRO F 453 192.548 226.244 231.097 1.00111.16 ATOM 47 CA PRO F 453 192.386 226.611 232.510 1.00111.16 ATOM 48 C PRO F 453 191.244 225.865 233.187 1.00111.16 ATOM 49 O PRO F 453 190.448 225.165 232.556 1.00111.16 ATOM 50 CB PRO F 453 192.099 228.116 232.453 1.00111.16 ATOM 51 CG PRO F 453 192.659 228.558 231.146 1.00111.16 ATOM 52 CD PRO F 453 192.427 227.414 230.213 1.00111.16 ATOM 53 N VAL F 454 191.171 226.044 234.509 1.00111.31 ATOM 54 CA VAL F 454 190.240 225.276 235.332 1.00111.31 ATOM 55 C VAL F 454 188.810 225.780 235.147 1.00111.31 ATOM 56 O VAL F 454 187.861 224.985 235.083 1.00111.31 ATOM 57 CB VAL F 454 190.687 225.331 236.806 1.00111.31 ATOM 58 CG1 VAL F 454 189.737 224.553 237.709 1.00111.31 ATOM 59 CG2 VAL F 454 192.110 224.810 236.947 1.00111.31 ATOM 60 N HIS F 455 188.636 227.103 235.045 1.00117.82 ATOM 61 CA HIS F 455 187.303 227.678 234.881 1.00117.82 ATOM 62 C HIS F 455 186.701 227.318 233.527 1.00117.82 ATOM 63 O HIS F 455 185.482 227.142 233.410 1.00117.82 ATOM 64 CB HIS F 455 187.360 229.195 235.055 1.00117.82 ATOM 65 CG HIS F 455 187.745 229.633 236.434 1.00117.82 ATOM 66 ND1 HIS F 455 186.876 229.579 237.502 1.00117.82 ATOM 67 CD2 HIS F 455 188.906 230.135 236.919 1.00117.82 ATOM 68 CE1 HIS F 455 187.484 230.027 238.585 1.00117.82 ATOM 69 NE2 HIS F 455 188.717 230.371 238.259 1.00117.82 ATOM 70 N MET F 456 187.545 227.182 232.499 1.00114.10 ATOM 71 CA MET F 456 187.062 226.746 231.193 1.00114.10 ATOM 72 C MET F 456 186.580 225.300 231.237 1.00114.10 ATOM 73 O MET F 456 185.542 224.975 230.650 1.00114.10 ATOM 74 CB MET F 456 188.158 226.919 230.142 1.00114.10 ATOM 75 CG MET F 456 188.363 228.351 229.652 1.00114.10 ATOM 76 SD MET F 456 188.957 229.497 230.916 1.00114.10 ATOM 77 CE MET F 456 187.480 230.455 231.255 1.00114.10 ATOM 78 N ILE F 457 187.310 224.430 231.945 1.00110.45 ATOM 79 CA ILE F 457 186.882 223.043 232.140 1.00110.45 ATOM 80 C ILE F 457 185.577 222.990 232.929 1.00110.45 ATOM 81 O ILE F 457 184.688 222.179 232.633 1.00110.45 ATOM 82 CB ILE F 457 188.009 222.239 232.823 1.00110.45 ATOM 83 CG1 ILE F 457 189.240 222.169 231.919 1.00110.45 ATOM 84 CG2 ILE F 457 187.570 220.824 233.182 1.00110.45 ATOM 85 CD1 ILE F 457 188.991 221.439 230.616 1.00110.45 ATOM 86 N GLU F 458 185.420 223.893 233.905 1.00115.26 ATOM 87 CA GLU F 458 184.185 223.955 234.684 1.00115.26 ATOM 88 C GLU F 458 182.995 224.375 233.825 1.00115.26 ATOM 89 O GLU F 458 181.916 223.776 233.914 1.00115.26 ATOM 90 CB GLU F 458 184.362 224.915 235.862 1.00115.26 ATOM 91 CG GLU F 458 183.141 225.043 236.766 1.00115.26 ATOM 92 CD GLU F 458 182.840 223.776 237.545 1.00115.26 ATOM 93 OE1 GLU F 458 183.781 223.006 237.835 1.00115.26 ATOM 94 OE2 GLU F 458 181.655 223.548 237.866 1.00115.26 ATOM 95 N THR F 459 183.182 225.384 232.965 1.00106.66 ATOM 96 CA THR F 459 182.096 225.820 232.088 1.00106.66 ATOM 97 C THR F 459 181.767 224.769 231.030 1.00106.66 ATOM 98 O THR F 459 180.594 224.586 230.681 1.00106.66 ATOM 99 CB THR F 459 182.443 227.154 231.425 1.00106.66 ATOM 100 OG1 THR F 459 183.684 227.037 230.718 1.00106.66 ATOM 101 CG2 THR F 459 182.532 228.267 232.460 1.00106.66 ATOM 102 N ILE F 460 182.782 224.055 230.529 1.00110.61 ATOM 103 CA ILE F 460 182.544 222.980 229.566 1.00110.61 ATOM 104 C ILE F 460 181.780 221.828 230.216 1.00110.61 ATOM 105 O ILE F 460 180.848 221.275 229.618 1.00110.61 ATOM 106 CB ILE F 460 183.882 222.526 228.942 1.00110.61 ATOM 107 CG1 ILE F 460 184.409 223.593 227.980 1.00110.61 ATOM 108 CG2 ILE F 460 183.756 221.200 228.209 1.00110.61 ATOM 109 CD1 ILE F 460 185.852 223.387 227.577 1.00110.61 ATOM 110 N ASN F 461 182.117 221.489 231.466 1.00112.65 ATOM 111 CA ASN F 461 181.394 220.433 232.174 1.00112.65 ATOM 112 C ASN F 461 179.958 220.845 232.485 1.00112.65 ATOM 113 O ASN F 461 179.036 220.022 232.390 1.00112.65 ATOM 114 CB ASN F 461 182.130 220.059 233.460 1.00112.65 ATOM 115 CG ASN F 461 183.420 219.311 233.196 1.00112.65 ATOM 116 OD1 ASN F 461 183.484 218.454 232.316 1.00112.65 ATOM 117 ND2 ASN F 461 184.454 219.627 233.966 1.00112.65 ATOM 118 N LYS F 462 179.748 222.119 232.840 1.00110.18 ATOM 119 CA LYS F 462 178.395 222.613 233.089 1.00110.18 ATOM 120 C LYS F 462 177.551 222.589 231.818 1.00110.18 ATOM 121 O LYS F 462 176.389 222.165 231.844 1.00110.18 ATOM 122 CB LYS F 462 178.444 224.027 233.672 1.00110.18 ATOM 123 CG LYS F 462 178.882 224.097 235.125 1.00110.18 ATOM 124 CD LYS F 462 179.050 225.540 235.576 1.00110.18 ATOM 125 CE LYS F 462 177.709 226.249 235.675 1.00110.18 ATOM 126 NZ LYS F 462 177.851 227.628 236.218 1.00110.18 ATOM 127 N LEU F 463 178.130 223.016 230.690 1.00110.15 ATOM 128 CA LEU F 463 177.389 222.997 229.431 1.00110.15 ATOM 129 C LEU F 463 177.138 221.572 228.950 1.00110.15 ATOM 130 O LEU F 463 176.098 221.297 228.343 1.00110.15 ATOM 131 CB LEU F 463 178.126 223.806 228.364 1.00110.15 ATOM 132 CG LEU F 463 178.139 225.323 228.570 1.00110.15 ATOM 133 CD1 LEU F 463 178.994 226.005 227.516 1.00110.15 ATOM 134 CD2 LEU F 463 176.723 225.881 228.560 1.00110.15 ATOM 135 N ASN F 464 178.052 220.643 229.252 1.00113.94 ATOM 136 CA ASN F 464 177.830 219.243 228.900 1.00113.94 ATOM 137 C ASN F 464 176.704 218.634 229.727 1.00113.94 ATOM 138 O ASN F 464 175.877 217.880 229.202 1.00113.94 ATOM 139 CB ASN F 464 179.116 218.435 229.074 1.00113.94 ATOM 140 CG ASN F 464 180.124 218.700 227.976 1.00113.94 ATOM 141 OD1 ASN F 464 179.766 218.833 226.806 1.00113.94 ATOM 142 ND2 ASN F 464 181.397 218.759 228.346 1.00113.94 ATOM 143 N ARG F 465 176.644 218.965 231.023 1.00118.85 ATOM 144 CA ARG F 465 175.564 218.446 231.861 1.00118.85 ATOM 145 C ARG F 465 174.216 219.048 231.472 1.00118.85 ATOM 146 O ARG F 465 173.198 218.344 231.453 1.00118.85 ATOM 147 CB ARG F 465 175.860 218.705 233.338 1.00118.85 ATOM 148 CG ARG F 465 177.003 217.874 233.895 1.00118.85 ATOM 149 CD ARG F 465 177.142 218.054 235.397 1.00118.85 ATOM 150 NE ARG F 465 177.586 219.396 235.762 1.00118.85 ATOM 151 CZ ARG F 465 176.842 220.272 236.430 1.00118.85 ATOM 152 NH1 ARG F 465 175.613 219.948 236.810 1.00118.85 ATOM 153 NH2 ARG F 465 177.326 221.471 236.721 1.00118.85 ATOM 154 N ILE F 466 174.197 220.341 231.128 1.00117.57 ATOM 155 CA ILE F 466 172.956 220.982 230.694 1.00117.57 ATOM 156 C ILE F 466 172.509 220.434 229.341 1.00117.57 ATOM 157 O ILE F 466 171.315 220.195 229.118 1.00117.57 ATOM 158 CB ILE F 466 173.130 222.516 230.684 1.00117.57 ATOM 159 CG1 ILE F 466 173.279 223.033 232.115 1.00117.57 ATOM 160 CG2 ILE F 466 171.959 223.224 230.014 1.00117.57 ATOM 161 CD1 ILE F 466 173.745 224.463 232.201 1.00117.57 ATOM 162 N SER F 467 173.461 220.157 228.443 1.00123.32 ATOM 163 CA SER F 467 173.123 219.588 227.141 1.00123.32 ATOM 164 C SER F 467 172.627 218.151 227.275 1.00123.32 ATOM 165 O SER F 467 171.714 217.731 226.555 1.00123.32 ATOM 166 CB SER F 467 174.337 219.655 226.214 1.00123.32 ATOM 167 OG SER F 467 174.704 220.998 225.951 1.00123.32 ATOM 168 N ARG F 468 173.199 217.393 228.215 1.00133.98 ATOM 169 CA ARG F 468 172.750 216.023 228.448 1.00133.98 ATOM 170 C ARG F 468 171.352 216.000 229.057 1.00133.98 ATOM 171 O ARG F 468 170.503 215.192 228.659 1.00133.98 ATOM 172 CB ARG F 468 173.747 215.295 229.351 1.00133.98 ATOM 173 CG ARG F 468 173.411 213.835 229.605 1.00133.98 ATOM 174 CD ARG F 468 174.454 213.177 230.497 1.00133.98 ATOM 175 NE ARG F 468 174.506 213.782 231.825 1.00133.98 ATOM 176 CZ ARG F 468 173.703 213.453 232.832 1.00133.98 ATOM 177 NH1 ARG F 468 172.779 212.515 232.672 1.00133.98 ATOM 178 NH2 ARG F 468 173.826 214.060 234.005 1.00133.98 ATOM 179 N GLN F 469 171.086 216.908 230.005 1.00129.42 ATOM 180 CA GLN F 469 169.753 217.000 230.597 1.00129.42 ATOM 181 C GLN F 469 168.724 217.479 229.576 1.00129.42 ATOM 182 O GLN F 469 167.579 217.012 229.572 1.00129.42 ATOM 183 CB GLN F 469 169.787 217.933 231.809 1.00129.42 ATOM 184 CG GLN F 469 168.480 218.014 232.582 1.00129.42 ATOM 185 CD GLN F 469 168.580 218.905 233.804 1.00129.42 ATOM 186 OE1 GLN F 469 169.623 219.502 234.068 1.00129.42 ATOM 187 NE2 GLN F 469 167.491 218.999 234.558 1.00129.42 ATOM 188 N MET F 470 169.129 218.376 228.673 1.00124.29 ATOM 189 CA MET F 470 168.213 218.871 227.653 1.00124.29 ATOM 190 C MET F 470 167.926 217.814 226.592 1.00124.29 ATOM 191 O MET F 470 166.793 217.720 226.109 1.00124.29 ATOM 192 CB MET F 470 168.789 220.134 227.016 1.00124.29 ATOM 193 CG MET F 470 167.837 220.870 226.095 1.00124.29 ATOM 194 SD MET F 470 168.601 222.365 225.446 1.00124.29 ATOM 195 CE MET F 470 168.695 223.347 226.940 1.00124.29 ATOM 196 N LEU F 471 168.927 217.006 226.229 1.00128.16 ATOM 197 CA LEU F 471 168.688 215.902 225.306 1.00128.16 ATOM 198 C LEU F 471 167.872 214.797 225.966 1.00128.16 ATOM 199 O LEU F 471 167.146 214.070 225.278 1.00128.16 ATOM 200 CB LEU F 471 170.024 215.366 224.779 1.00128.16 ATOM 201 CG LEU F 471 170.081 214.368 223.614 1.00128.16 ATOM 202 CD1 LEU F 471 171.319 214.646 222.785 1.00128.16 ATOM 203 CD2 LEU F 471 170.107 212.916 224.083 1.00128.16 ATOM 204 N GLN F 472 167.977 214.655 227.289 1.00137.11 ATOM 205 CA GLN F 472 167.156 213.675 227.992 1.00137.11 ATOM 206 C GLN F 472 165.703 214.129 228.084 1.00137.11 ATOM 207 O GLN F 472 164.783 213.321 227.910 1.00137.11 ATOM 208 CB GLN F 472 167.733 213.421 229.384 1.00137.11 ATOM 209 CG GLN F 472 167.001 212.357 230.177 1.00137.11 ATOM 210 CD GLN F 472 167.055 210.996 229.514 1.00137.11 ATOM 211 OE1 GLN F 472 166.072 210.536 228.936 1.00137.11 ATOM 212 NE2 GLN F 472 168.210 210.345 229.593 1.00137.11 ATOM 213 N GLU F 473 165.475 215.417 228.351 1.00132.88 ATOM 214 CA GLU F 473 164.110 215.910 228.513 1.00132.88 ATOM 215 C GLU F 473 163.414 216.082 227.167 1.00132.88 ATOM 216 O GLU F 473 162.299 215.588 226.965 1.00132.88 ATOM 217 CB GLU F 473 164.116 217.228 229.292 1.00132.88 ATOM 218 CG GLU F 473 164.490 217.085 230.758 1.00132.88 ATOM 219 CD GLU F 473 164.504 218.414 231.486 1.00132.88 ATOM 220 OE1 GLU F 473 164.348 219.460 230.821 1.00132.88 ATOM 221 OE2 GLU F 473 164.672 218.414 232.724 1.00132.88 ATOM 222 N MET F 474 164.056 216.786 226.231 1.00128.63 ATOM 223 CA MET F 474 163.417 217.075 224.950 1.00128.63 ATOM 224 C MET F 474 163.410 215.850 224.043 1.00128.63 ATOM 225 O MET F 474 162.353 215.431 223.557 1.00128.63 ATOM 226 CB MET F 474 164.122 218.248 224.268 1.00128.63 ATOM 227 CG MET F 474 163.987 219.568 225.009 1.00128.63 ATOM 228 SD MET F 474 162.273 220.106 225.171 1.00128.63 ATOM 229 CE MET F 474 161.882 220.513 223.471 1.00128.63 ATOM 230 N GLY F 475 164.580 215.262 223.803 1.00125.08 ATOM 231 CA GLY F 475 164.698 214.093 222.953 1.00125.08 ATOM 232 C GLY F 475 165.392 214.328 221.629 1.00125.08 ATOM 233 O GLY F 475 165.400 213.420 220.789 1.00125.08 ATOM 234 N ARG F 476 165.969 215.504 221.409 1.00110.00 ATOM 235 CA ARG F 476 166.686 215.796 220.173 1.00110.00 ATOM 236 C ARG F 476 167.994 216.498 220.536 1.00110.00 ATOM 237 O ARG F 476 168.398 216.557 221.704 1.00110.00 ATOM 238 CB ARG F 476 165.778 216.576 219.207 1.00110.00 ATOM 239 CG ARG F 476 165.161 217.875 219.735 1.00110.00 ATOM 240 CD ARG F 476 165.998 219.106 219.408 1.00110.00 ATOM 241 NE ARG F 476 166.297 219.215 217.982 1.00110.00 ATOM 242 CZ ARG F 476 165.472 219.723 217.072 1.00110.00 ATOM 243 NH1 ARG F 476 164.282 220.187 217.429 1.00110.00 ATOM 244 NH2 ARG F 476 165.844 219.775 215.800 1.00110.00 ATOM 245 N GLU F 477 168.679 217.038 219.517 1.00112.84 ATOM 246 CA GLU F 477 170.016 217.598 219.648 1.00112.84 ATOM 247 C GLU F 477 170.010 218.879 220.485 1.00112.84 ATOM 248 O GLU F 477 169.082 219.686 220.395 1.00112.84 ATOM 249 CB GLU F 477 170.604 217.888 218.271 1.00112.84 ATOM 250 CG GLU F 477 170.896 216.644 217.449 1.00112.84 ATOM 251 CD GLU F 477 171.480 216.969 216.089 1.00112.84 ATOM 252 OE1 GLU F 477 171.538 218.166 215.738 1.00112.84 ATOM 253 OE2 GLU F 477 171.885 216.030 215.373 1.00112.84 ATOM 254 N PRO F 478 171.047 219.088 221.309 1.00133.64 ATOM 255 CA PRO F 478 171.086 220.287 222.160 1.00133.64 ATOM 256 C PRO F 478 171.413 221.559 221.389 1.00133.64 ATOM 257 O PRO F 478 172.581 221.949 221.280 1.00133.64 ATOM 258 CB PRO F 478 172.174 219.951 223.188 1.00133.64 ATOM 259 CG PRO F 478 173.050 218.955 222.503 1.00133.64 ATOM 260 CD PRO F 478 172.145 218.153 221.616 1.00133.64 ATOM 261 N THR F 479 170.382 222.188 220.828 1.00138.76 ATOM 262 CA THR F 479 170.558 223.455 220.122 1.00138.76 ATOM 263 C THR F 479 170.983 224.546 221.101 1.00138.76 ATOM 264 O THR F 479 170.352 224.709 222.152 1.00138.76 ATOM 265 CB THR F 479 169.266 223.858 219.414 1.00138.76 ATOM 266 OG1 THR F 479 168.223 224.036 220.381 1.00138.76 ATOM 267 CG2 THR F 479 168.847 222.785 218.418 1.00138.76 TER