HEADER VIRAL PROTEIN 31-DEC-69 7EB5 TITLE Cryo-EM structure of SARS-CoV-2 Spike D614G variant, two RBD-up TITLE 2 conformation 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: Spike glycoprotein; COMPND 3 CHAIN: C, A, B; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 676 REMARK 465 GLN B 677 REMARK 465 THR B 678 REMARK 465 ASN B 679 REMARK 465 SER B 680 REMARK 465 PRO B 681 REMARK 465 GLY B 682 REMARK 465 SER B 683 REMARK 465 ALA B 684 REMARK 465 SER B 685 REMARK 465 SER B 686 REMARK 465 VAL B 687 REMARK 465 ALA B 688 REMARK 465 SER B 689 REMARK 465 GLN B 690 DBREF 7EB5 B 1 1208 UNP P0DTC2 SPIKE_SARS2 1 1208 SEQRES 1 B 20 GLU LYS GLY ILE TYR GLN THR SER ASN PHE ARG VAL GLN SEQRES 2 B 20 PRO THR GLU SER ILE VAL ARG SEQRES 1 B 165 SER THR ASN LEU VAL LYS ASN LYS CYS VAL ASN PHE ASN SEQRES 2 B 165 PHE ASN GLY LEU THR GLY THR GLY VAL LEU THR GLU SER SEQRES 3 B 165 ASN LYS LYS PHE LEU PRO PHE GLN GLN PHE GLY ARG ASP SEQRES 4 B 165 ILE ALA ASP THR THR ASP ALA VAL ARG ASP PRO GLN THR SEQRES 5 B 165 LEU GLU ILE LEU ASP ILE THR PRO CYS SER PHE GLY GLY SEQRES 6 B 165 VAL SER VAL ILE THR PRO GLY THR ASN THR SER ASN GLN SEQRES 7 B 165 VAL ALA VAL LEU TYR GLN GLY VAL ASN CYS THR GLU VAL SEQRES 8 B 165 PRO VAL ALA ILE HIS ALA ASP GLN LEU THR PRO THR TRP SEQRES 9 B 165 ARG VAL TYR SER THR GLY SER ASN VAL PHE GLN THR ARG SEQRES 10 B 165 ALA GLY CYS LEU ILE GLY ALA GLU HIS VAL ASN ASN SER SEQRES 11 B 165 TYR GLU CYS ASP ILE PRO ILE GLY ALA GLY ILE CYS ALA SEQRES 12 B 165 SER TYR GLN THR GLN THR ASN SER PRO GLY SER ALA SER SEQRES 13 B 165 SER VAL ALA SER GLN SER ILE ILE ALA ATOM 1 N GLU A 309 179.790 215.131 201.617 1.00141.21 ATOM 2 CA GLU A 309 179.769 214.721 200.224 1.00141.21 ATOM 3 C GLU A 309 179.725 213.204 200.130 1.00141.21 ATOM 4 O GLU A 309 180.043 212.490 201.085 1.00141.21 ATOM 5 CB GLU A 309 180.992 215.260 199.474 1.00141.21 ATOM 6 CG GLU A 309 181.314 216.716 199.771 1.00141.21 ATOM 7 CD GLU A 309 182.200 216.885 200.990 1.00141.21 ATOM 8 OE1 GLU A 309 182.679 215.862 201.523 1.00141.21 ATOM 9 OE2 GLU A 309 182.416 218.039 201.416 1.00141.21 ATOM 10 N LYS A 310 179.316 212.719 198.962 1.00134.57 ATOM 11 CA LYS A 310 179.237 211.284 198.734 1.00134.57 ATOM 12 C LYS A 310 180.609 210.644 198.894 1.00134.57 ATOM 13 O LYS A 310 181.595 211.109 198.317 1.00134.57 ATOM 14 CB LYS A 310 178.684 211.010 197.338 1.00134.57 ATOM 15 CG LYS A 310 178.567 209.542 196.995 1.00134.57 ATOM 16 CD LYS A 310 177.914 209.355 195.641 1.00134.57 ATOM 17 CE LYS A 310 178.844 209.792 194.525 1.00134.57 ATOM 18 NZ LYS A 310 178.264 209.510 193.184 1.00134.57 ATOM 19 N GLY A 311 180.668 209.576 199.676 1.00126.29 ATOM 20 CA GLY A 311 181.922 208.892 199.909 1.00126.29 ATOM 21 C GLY A 311 181.859 208.065 201.178 1.00126.29 ATOM 22 O GLY A 311 180.804 207.902 201.788 1.00126.29 ATOM 23 N ILE A 312 183.026 207.550 201.558 1.00118.98 ATOM 24 CA ILE A 312 183.184 206.696 202.727 1.00118.98 ATOM 25 C ILE A 312 184.104 207.390 203.720 1.00118.98 ATOM 26 O ILE A 312 185.162 207.906 203.346 1.00118.98 ATOM 27 CB ILE A 312 183.736 205.308 202.342 1.00118.98 ATOM 28 CG1 ILE A 312 184.090 204.504 203.592 1.00118.98 ATOM 29 CG2 ILE A 312 184.931 205.441 201.415 1.00118.98 ATOM 30 CD1 ILE A 312 184.433 203.063 203.309 1.00118.98 ATOM 31 N TYR A 313 183.695 207.407 204.985 1.00120.34 ATOM 32 CA TYR A 313 184.443 208.076 206.037 1.00120.34 ATOM 33 C TYR A 313 184.620 207.134 207.216 1.00120.34 ATOM 34 O TYR A 313 183.773 206.278 207.479 1.00120.34 ATOM 35 CB TYR A 313 183.739 209.356 206.493 1.00120.34 ATOM 36 CG TYR A 313 183.335 210.264 205.356 1.00120.34 ATOM 37 CD1 TYR A 313 182.113 210.107 204.718 1.00120.34 ATOM 38 CD2 TYR A 313 184.176 211.276 204.919 1.00120.34 ATOM 39 CE1 TYR A 313 181.741 210.931 203.677 1.00120.34 ATOM 40 CE2 TYR A 313 183.812 212.107 203.879 1.00120.34 ATOM 41 CZ TYR A 313 182.593 211.930 203.262 1.00120.34 ATOM 42 OH TYR A 313 182.223 212.753 202.225 1.00120.34 ATOM 43 N GLN A 314 185.732 207.300 207.925 1.00114.44 ATOM 44 CA GLN A 314 186.056 206.478 209.083 1.00114.44 ATOM 45 C GLN A 314 185.731 207.263 210.347 1.00114.44 ATOM 46 O GLN A 314 186.284 208.345 210.567 1.00114.44 ATOM 47 CB GLN A 314 187.528 206.069 209.060 1.00114.44 ATOM 48 CG GLN A 314 187.850 204.847 209.898 1.00114.44 ATOM 49 CD GLN A 314 188.153 205.196 211.339 1.00114.44 ATOM 50 OE1 GLN A 314 188.276 206.368 211.691 1.00114.44 ATOM 51 NE2 GLN A 314 188.278 204.179 212.181 1.00114.44 ATOM 52 N THR A 315 184.839 206.719 211.172 1.00118.62 ATOM 53 CA THR A 315 184.385 207.422 212.368 1.00118.62 ATOM 54 C THR A 315 185.158 207.001 213.616 1.00118.62 ATOM 55 O THR A 315 185.797 207.833 214.267 1.00118.62 ATOM 56 CB THR A 315 182.885 207.195 212.576 1.00118.62 ATOM 57 OG1 THR A 315 182.661 205.853 213.022 1.00118.62 ATOM 58 CG2 THR A 315 182.133 207.424 211.281 1.00118.62 ATOM 59 N SER A 316 185.110 205.719 213.960 1.00124.07 ATOM 60 CA SER A 316 185.673 205.249 215.221 1.00124.07 ATOM 61 C SER A 316 185.979 203.760 215.100 1.00124.07 ATOM 62 O SER A 316 186.023 203.202 213.998 1.00124.07 ATOM 63 CB SER A 316 184.718 205.540 216.383 1.00124.07 ATOM 64 OG SER A 316 185.163 204.912 217.571 1.00124.07 ATOM 65 N ASN A 317 186.209 203.117 216.241 1.00124.70 ATOM 66 CA ASN A 317 186.472 201.689 216.302 1.00124.70 ATOM 67 C ASN A 317 185.669 201.078 217.440 1.00124.70 ATOM 68 O ASN A 317 185.300 201.756 218.401 1.00124.70 ATOM 69 CB ASN A 317 187.963 201.403 216.503 1.00124.70 ATOM 70 CG ASN A 317 188.571 202.247 217.602 1.00124.70 ATOM 71 OD1 ASN A 317 187.899 203.094 218.191 1.00124.70 ATOM 72 ND2 ASN A 317 189.847 202.020 217.887 1.00124.70 ATOM 73 N PHE A 318 185.397 199.781 217.323 1.00133.16 ATOM 74 CA PHE A 318 184.682 199.046 218.350 1.00133.16 ATOM 75 C PHE A 318 185.548 197.900 218.852 1.00133.16 ATOM 76 O PHE A 318 186.342 197.313 218.102 1.00133.16 ATOM 77 CB PHE A 318 183.348 198.489 217.838 1.00133.16 ATOM 78 CG PHE A 318 183.495 197.377 216.844 1.00133.16 ATOM 79 CD1 PHE A 318 183.615 197.643 215.496 1.00133.16 ATOM 80 CD2 PHE A 318 183.474 196.057 217.260 1.00133.16 ATOM 81 CE1 PHE A 318 183.746 196.617 214.585 1.00133.16 ATOM 82 CE2 PHE A 318 183.600 195.029 216.356 1.00133.16 ATOM 83 CZ PHE A 318 183.734 195.308 215.016 1.00133.16 ATOM 84 N ARG A 319 185.376 197.596 220.135 1.00144.91 ATOM 85 CA ARG A 319 186.059 196.506 220.813 1.00144.91 ATOM 86 C ARG A 319 185.036 195.749 221.643 1.00144.91 ATOM 87 O ARG A 319 184.225 196.365 222.340 1.00144.91 ATOM 88 CB ARG A 319 187.178 197.039 221.707 1.00144.91 ATOM 89 CG ARG A 319 187.992 195.972 222.408 1.00144.91 ATOM 90 CD ARG A 319 188.722 196.557 223.607 1.00144.91 ATOM 91 NE ARG A 319 189.477 197.756 223.261 1.00144.91 ATOM 92 CZ ARG A 319 189.142 198.985 223.631 1.00144.91 ATOM 93 NH1 ARG A 319 188.065 199.216 224.363 1.00144.91 ATOM 94 NH2 ARG A 319 189.904 200.007 223.254 1.00144.91 ATOM 95 N VAL A 320 185.075 194.423 221.576 1.00148.25 ATOM 96 CA VAL A 320 184.127 193.601 222.321 1.00148.25 ATOM 97 C VAL A 320 184.590 193.515 223.769 1.00148.25 ATOM 98 O VAL A 320 185.687 193.024 224.054 1.00148.25 ATOM 99 CB VAL A 320 183.992 192.206 221.699 1.00148.25 ATOM 100 CG1 VAL A 320 182.913 191.416 222.415 1.00148.25 ATOM 101 CG2 VAL A 320 183.674 192.321 220.222 1.00148.25 ATOM 102 N GLN A 321 183.757 193.990 224.682 1.00155.78 ATOM 103 CA GLN A 321 184.127 194.022 226.086 1.00155.78 ATOM 104 C GLN A 321 184.058 192.625 226.701 1.00155.78 ATOM 105 O GLN A 321 183.228 191.803 226.304 1.00155.78 ATOM 106 CB GLN A 321 183.210 194.967 226.854 1.00155.78 ATOM 107 CG GLN A 321 183.324 196.416 226.418 1.00155.78 ATOM 108 CD GLN A 321 184.752 196.820 226.118 1.00155.78 ATOM 109 OE1 GLN A 321 185.623 196.757 226.985 1.00155.78 ATOM 110 NE2 GLN A 321 185.001 197.237 224.882 1.00155.78 ATOM 111 N PRO A 322 184.924 192.335 227.669 1.00163.82 ATOM 112 CA PRO A 322 184.844 191.048 228.367 1.00163.82 ATOM 113 C PRO A 322 183.580 190.949 229.206 1.00163.82 ATOM 114 O PRO A 322 183.006 191.953 229.633 1.00163.82 ATOM 115 CB PRO A 322 186.098 191.042 229.247 1.00163.82 ATOM 116 CG PRO A 322 186.431 192.482 229.433 1.00163.82 ATOM 117 CD PRO A 322 186.044 193.159 228.153 1.00163.82 ATOM 118 N THR A 323 183.149 189.710 229.441 1.00170.77 ATOM 119 CA THR A 323 181.906 189.441 230.158 1.00170.77 ATOM 120 C THR A 323 182.143 189.129 231.632 1.00170.77 ATOM 121 O THR A 323 181.597 189.806 232.508 1.00170.77 ATOM 122 CB THR A 323 181.153 188.287 229.482 1.00170.77 ATOM 123 OG1 THR A 323 181.821 187.051 229.762 1.00170.77 ATOM 124 CG2 THR A 323 181.101 188.497 227.978 1.00170.77 ATOM 125 N GLU A 324 182.952 188.113 231.924 1.00174.40 ATOM 126 CA GLU A 324 183.217 187.698 233.297 1.00174.40 ATOM 127 C GLU A 324 184.717 187.467 233.447 1.00174.40 ATOM 128 O GLU A 324 185.511 187.846 232.582 1.00174.40 ATOM 129 CB GLU A 324 182.394 186.454 233.659 1.00174.40 ATOM 130 CG GLU A 324 182.812 185.188 232.930 1.00174.40 ATOM 131 CD GLU A 324 181.843 184.804 231.830 1.00174.40 ATOM 132 OE1 GLU A 324 180.991 185.640 231.467 1.00174.40 ATOM 133 OE2 GLU A 324 181.933 183.665 231.328 1.00174.40 ATOM 134 N SER A 325 185.109 186.851 234.561 1.00176.64 ATOM 135 CA SER A 325 186.508 186.572 234.851 1.00176.64 ATOM 136 C SER A 325 186.664 185.136 235.330 1.00176.64 ATOM 137 O SER A 325 185.763 184.570 235.954 1.00176.64 ATOM 138 CB SER A 325 187.064 187.533 235.908 1.00176.64 ATOM 139 OG SER A 325 186.441 187.322 237.162 1.00176.64 ATOM 140 N ILE A 326 187.823 184.552 235.031 1.00176.71 ATOM 141 CA ILE A 326 188.160 183.197 235.449 1.00176.71 ATOM 142 C ILE A 326 189.565 183.198 236.034 1.00176.71 ATOM 143 O ILE A 326 190.477 183.827 235.487 1.00176.71 ATOM 144 CB ILE A 326 188.061 182.190 234.284 1.00176.71 ATOM 145 CG1 ILE A 326 188.800 182.717 233.054 1.00176.71 ATOM 146 CG2 ILE A 326 186.607 181.897 233.959 1.00176.71 ATOM 147 CD1 ILE A 326 188.973 181.688 231.961 1.00176.71 ATOM 148 N VAL A 327 189.733 182.499 237.153 1.00184.15 ATOM 149 CA VAL A 327 191.027 182.354 237.810 1.00184.15 ATOM 150 C VAL A 327 191.224 180.884 238.153 1.00184.15 ATOM 151 O VAL A 327 190.296 180.212 238.613 1.00184.15 ATOM 152 CB VAL A 327 191.131 183.250 239.064 1.00184.15 ATOM 153 CG1 VAL A 327 190.008 182.946 240.046 1.00184.15 ATOM 154 CG2 VAL A 327 192.488 183.090 239.725 1.00184.15 ATOM 155 N ARG A 328 192.430 180.377 237.906 1.00186.26 ATOM 156 CA ARG A 328 192.721 178.965 238.101 1.00186.26 ATOM 157 C ARG A 328 194.045 178.804 238.834 1.00186.26 ATOM 158 O ARG A 328 194.969 179.604 238.669 1.00186.26 ATOM 159 CB ARG A 328 192.749 178.218 236.761 1.00186.26 ATOM 160 CG ARG A 328 192.981 176.728 236.883 1.00186.26 ATOM 161 CD ARG A 328 192.098 175.947 235.933 1.00186.26 ATOM 162 NE ARG A 328 190.719 175.899 236.399 1.00186.26 ATOM 163 CZ ARG A 328 189.809 175.045 235.951 1.00186.26 ATOM 164 NH1 ARG A 328 190.104 174.141 235.032 1.00186.26 ATOM 165 NH2 ARG A 328 188.575 175.095 236.444 1.00186.26 TER