HEADER RIBOSOME 31-DEC-69 7LH5 TITLE Crystal structure of the Thermus thermophilus 70S ribosome in complex TITLE 2 with plazomicin, mRNA and tRNAs COMPND MOL_ID: 29; COMPND 2 MOLECULE: 50S ribosomal protein L31; COMPND 3 CHAIN: B4, D4; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.27 ANGSTORMS DBREF 7LH5 D 1 71 UNP Q5SJE1 RL31_THET8 1 71 SEQRES 1 D4 49 MET LYS GLU GLY ILE HIS PRO LYS LEU VAL PRO ALA ARG SEQRES 2 D4 49 ILE ILE CYS GLY CYS GLY ASN VAL ILE GLU THR TYR SER SEQRES 3 D4 49 THR LYS PRO GLU ILE TYR VAL GLU VAL CYS SER LYS CYS SEQRES 4 D4 49 HIS PRO PHE TYR THR GLY GLN GLN ARG PHE ATOM 1 N MET D 1 -171.641 -17.201 48.901 1.00 76.85 ATOM 2 CA MET D 1 -172.003 -17.943 50.108 1.00 81.99 ATOM 3 C MET D 1 -170.823 -18.435 50.984 1.00 80.82 ATOM 4 O MET D 1 -170.812 -19.575 51.402 1.00 80.03 ATOM 5 CB MET D 1 -172.866 -19.150 49.722 1.00 85.47 ATOM 6 N LYS D 2 -169.851 -17.586 51.305 1.00 82.10 ATOM 7 CA LYS D 2 -168.801 -18.010 52.225 1.00 80.29 ATOM 8 C LYS D 2 -168.177 -16.778 52.859 1.00 84.09 ATOM 9 O LYS D 2 -167.963 -15.780 52.168 1.00 88.53 ATOM 10 CB LYS D 2 -167.738 -18.839 51.498 1.00 75.64 ATOM 11 N GLU D 3 -167.901 -16.838 54.167 1.00 81.21 ATOM 12 CA GLU D 3 -166.989 -15.905 54.834 1.00 86.68 ATOM 13 C GLU D 3 -167.393 -14.447 54.802 1.00 93.78 ATOM 14 O GLU D 3 -168.442 -14.044 55.331 1.00100.56 ATOM 15 CB GLU D 3 -165.585 -15.968 54.217 1.00 91.84 ATOM 16 N GLY D 4 -166.519 -13.632 54.217 1.00 91.59 ATOM 17 CA GLY D 4 -166.742 -12.209 54.228 1.00 96.08 ATOM 18 C GLY D 4 -166.335 -11.445 52.989 1.00104.04 ATOM 19 O GLY D 4 -165.938 -10.285 53.127 1.00109.85 ATOM 20 N ILE D 5 -166.511 -12.012 51.788 1.00102.48 ATOM 21 CA ILE D 5 -165.903 -11.464 50.573 1.00 99.03 ATOM 22 C ILE D 5 -166.908 -10.924 49.539 1.00104.78 ATOM 23 O ILE D 5 -166.471 -10.300 48.555 1.00103.19 ATOM 24 CB ILE D 5 -164.974 -12.502 49.912 1.00 86.77 ATOM 25 N HIS D 6 -168.222 -11.091 49.742 1.00106.07 ATOM 26 CA HIS D 6 -169.235 -10.842 48.711 1.00 97.13 ATOM 27 C HIS D 6 -169.574 -9.362 48.526 1.00 94.72 ATOM 28 O HIS D 6 -169.078 -8.483 49.227 1.00101.67 ATOM 29 CB HIS D 6 -170.504 -11.608 49.069 1.00 93.40 ATOM 30 N PRO D 7 -170.404 -9.047 47.533 1.00 95.81 ATOM 31 CA PRO D 7 -171.284 -7.873 47.650 1.00101.28 ATOM 32 C PRO D 7 -172.559 -8.266 48.403 1.00101.52 ATOM 33 O PRO D 7 -172.473 -9.126 49.288 1.00103.46 ATOM 34 CB PRO D 7 -171.546 -7.479 46.190 1.00 95.79 ATOM 35 N LYS D 8 -173.738 -7.704 48.101 1.00 92.76 ATOM 36 CA LYS D 8 -174.908 -8.153 48.858 1.00 92.50 ATOM 37 C LYS D 8 -176.235 -8.145 48.088 1.00 92.11 ATOM 38 O LYS D 8 -176.425 -8.886 47.112 1.00 81.68 ATOM 39 CB LYS D 8 -175.044 -7.313 50.136 1.00 90.55 ATOM 40 N LEU D 9 -177.177 -7.329 48.554 1.00 96.39 ATOM 41 CA LEU D 9 -178.569 -7.458 48.144 1.00 97.58 ATOM 42 C LEU D 9 -179.252 -6.102 48.033 1.00 99.18 ATOM 43 O LEU D 9 -178.798 -5.236 47.281 1.00 94.83 ATOM 44 CB LEU D 9 -179.330 -8.350 49.134 1.00 92.35 ATOM 45 N VAL D 10 -180.333 -5.922 48.791 1.00105.07 ATOM 46 CA VAL D 10 -181.251 -4.781 48.715 1.00107.51 ATOM 47 C VAL D 10 -181.813 -4.680 47.298 1.00102.07 ATOM 48 O VAL D 10 -182.245 -5.703 46.741 1.00 94.81 ATOM 49 CB VAL D 10 -180.573 -3.475 49.166 1.00102.90 ATOM 50 N PRO D 11 -181.834 -3.487 46.682 1.00103.72 ATOM 51 CA PRO D 11 -182.405 -3.355 45.325 1.00106.92 ATOM 52 C PRO D 11 -181.548 -3.964 44.209 1.00112.88 ATOM 53 O PRO D 11 -182.010 -3.973 43.052 1.00107.37 ATOM 54 CB PRO D 11 -182.542 -1.834 45.146 1.00100.00 ATOM 55 N ALA D 12 -180.340 -4.491 44.520 1.00117.21 ATOM 56 CA ALA D 12 -179.458 -5.112 43.522 1.00105.26 ATOM 57 C ALA D 12 -180.138 -6.269 42.807 1.00 97.31 ATOM 58 O ALA D 12 -179.667 -6.689 41.747 1.00 89.15 ATOM 59 CB ALA D 12 -178.144 -5.584 44.167 1.00 93.65 ATOM 60 N ARG D 13 -181.235 -6.781 43.361 1.00101.31 ATOM 61 CA ARG D 13 -182.154 -7.630 42.618 1.00104.67 ATOM 62 C ARG D 13 -183.045 -6.828 41.661 1.00107.33 ATOM 63 O ARG D 13 -182.578 -5.945 40.921 1.00 93.96 ATOM 64 CB ARG D 13 -183.001 -8.458 43.598 1.00 95.85 ATOM 65 N ILE D 14 -184.347 -7.135 41.703 1.00116.72 ATOM 66 CA ILE D 14 -185.336 -6.756 40.692 1.00111.93 ATOM 67 C ILE D 14 -185.864 -5.346 40.927 1.00108.84 ATOM 68 O ILE D 14 -187.072 -5.099 40.832 1.00100.42 ATOM 69 CB ILE D 14 -186.496 -7.774 40.669 1.00103.15 ATOM 70 N ILE D 15 -184.965 -4.410 41.236 1.00113.52 ATOM 71 CA ILE D 15 -185.351 -3.008 41.367 1.00116.86 ATOM 72 C ILE D 15 -185.607 -2.453 39.971 1.00118.50 ATOM 73 O ILE D 15 -184.706 -1.879 39.348 1.00120.57 ATOM 74 CB ILE D 15 -184.280 -2.189 42.115 1.00111.23 ATOM 75 N CYS D 16 -186.839 -2.617 39.480 1.00117.31 ATOM 76 CA CYS D 16 -187.211 -2.307 38.100 1.00121.40 ATOM 77 C CYS D 16 -186.570 -1.025 37.576 1.00125.15 ATOM 78 O CYS D 16 -185.608 -1.082 36.798 1.00119.58 ATOM 79 CB CYS D 16 -188.737 -2.216 37.980 1.00123.20 ATOM 80 N GLY D 17 -187.088 0.130 38.003 1.00123.39 ATOM 81 CA GLY D 17 -186.581 1.404 37.537 1.00128.48 ATOM 82 C GLY D 17 -185.486 2.011 38.398 1.00138.94 ATOM 83 O GLY D 17 -185.437 3.240 38.524 1.00142.59 ATOM 84 N CYS D 18 -184.588 1.183 38.967 1.00137.08 ATOM 85 CA CYS D 18 -183.555 1.637 39.906 1.00129.08 ATOM 86 C CYS D 18 -182.627 2.658 39.271 1.00129.79 ATOM 87 O CYS D 18 -181.415 2.434 39.187 1.00129.78 ATOM 88 CB CYS D 18 -182.726 0.467 40.434 1.00115.29 ATOM 89 N GLY D 19 -183.192 3.788 38.853 1.00128.79 ATOM 90 CA GLY D 19 -182.474 4.801 38.124 1.00128.08 ATOM 91 C GLY D 19 -182.688 4.665 36.635 1.00133.77 ATOM 92 O GLY D 19 -181.725 4.509 35.879 1.00137.43 ATOM 93 N ASN D 20 -183.943 4.715 36.185 1.00136.72 ATOM 94 CA ASN D 20 -184.183 4.847 34.750 1.00141.99 ATOM 95 C ASN D 20 -183.554 6.119 34.191 1.00139.74 ATOM 96 O ASN D 20 -183.471 6.272 32.964 1.00134.13 ATOM 97 CB ASN D 20 -185.692 4.815 34.457 1.00148.14 ATOM 98 N VAL D 21 -183.127 7.033 35.070 1.00140.14 ATOM 99 CA VAL D 21 -182.292 8.181 34.735 1.00137.35 ATOM 100 C VAL D 21 -181.043 8.171 35.619 1.00136.17 ATOM 101 O VAL D 21 -180.473 9.227 35.920 1.00131.69 ATOM 102 CB VAL D 21 -183.067 9.504 34.879 1.00134.95 ATOM 103 N ILE D 22 -180.635 6.982 36.066 1.00136.20 ATOM 104 CA ILE D 22 -179.266 6.714 36.502 1.00134.37 ATOM 105 C ILE D 22 -178.559 5.775 35.514 1.00130.32 ATOM 106 O ILE D 22 -177.560 5.143 35.857 1.00130.01 ATOM 107 CB ILE D 22 -179.222 6.166 37.941 1.00129.48 ATOM 108 N GLU D 23 -179.071 5.691 34.280 1.00124.01 ATOM 109 CA GLU D 23 -178.486 4.893 33.209 1.00118.40 ATOM 110 C GLU D 23 -179.041 5.326 31.839 1.00122.82 ATOM 111 O GLU D 23 -179.242 6.523 31.580 1.00110.89 ATOM 112 CB GLU D 23 -178.752 3.407 33.488 1.00100.79 ATOM 113 N THR D 24 -179.217 4.354 30.931 1.00127.43 ATOM 114 CA THR D 24 -180.284 4.367 29.930 1.00115.49 ATOM 115 C THR D 24 -181.325 3.380 30.444 1.00119.08 ATOM 116 O THR D 24 -181.880 3.573 31.533 1.00128.06 ATOM 117 CB THR D 24 -179.810 3.968 28.530 1.00 98.79 ATOM 118 N TYR D 25 -181.542 2.300 29.699 1.00104.69 ATOM 119 CA TYR D 25 -182.409 1.190 30.089 1.00106.19 ATOM 120 C TYR D 25 -182.792 0.478 28.811 1.00109.42 ATOM 121 O TYR D 25 -182.464 0.957 27.722 1.00109.99 ATOM 122 CB TYR D 25 -183.681 1.622 30.832 1.00104.00 ATOM 123 N SER D 26 -183.494 -0.648 28.923 1.00108.44 ATOM 124 CA SER D 26 -184.033 -1.286 27.726 1.00109.26 ATOM 125 C SER D 26 -185.254 -0.567 27.199 1.00120.82 ATOM 126 O SER D 26 -185.898 -1.133 26.311 1.00121.41 ATOM 127 CB SER D 26 -184.375 -2.748 28.011 1.00103.90 ATOM 128 N THR D 27 -185.538 0.623 27.753 1.00126.76 ATOM 129 CA THR D 27 -186.698 1.458 27.431 1.00119.24 ATOM 130 C THR D 27 -186.517 2.212 26.117 1.00118.28 ATOM 131 O THR D 27 -187.071 1.821 25.086 1.00113.48 ATOM 132 CB THR D 27 -186.959 2.456 28.567 1.00115.30 ATOM 133 N LYS D 28 -185.746 3.296 26.146 1.00121.41 ATOM 134 CA LYS D 28 -185.536 4.098 24.955 1.00125.96 ATOM 135 C LYS D 28 -184.653 3.359 23.952 1.00125.21 ATOM 136 O LYS D 28 -183.989 2.381 24.298 1.00123.76 ATOM 137 CB LYS D 28 -184.903 5.441 25.325 1.00123.85 ATOM 138 N PRO D 29 -184.688 3.777 22.680 1.00128.11 ATOM 139 CA PRO D 29 -183.613 3.449 21.724 1.00134.89 ATOM 140 C PRO D 29 -183.129 2.004 21.662 1.00137.18 ATOM 141 O PRO D 29 -182.285 1.689 20.819 1.00135.05 ATOM 142 CB PRO D 29 -182.472 4.372 22.171 1.00135.44 ATOM 143 N GLU D 30 -183.645 1.114 22.512 1.00136.12 ATOM 144 CA GLU D 30 -183.183 -0.271 22.530 1.00138.53 ATOM 145 C GLU D 30 -183.583 -1.018 21.260 1.00136.26 ATOM 146 O GLU D 30 -184.069 -2.153 21.332 1.00131.79 ATOM 147 CB GLU D 30 -183.730 -0.999 23.763 1.00130.56 ATOM 148 N ILE D 31 -183.363 -0.394 20.099 1.00132.22 ATOM 149 CA ILE D 31 -183.817 -0.898 18.809 1.00133.23 ATOM 150 C ILE D 31 -185.342 -0.957 18.798 1.00147.61 ATOM 151 O ILE D 31 -185.941 -1.990 19.120 1.00155.37 ATOM 152 CB ILE D 31 -183.195 -2.272 18.486 1.00133.57 ATOM 153 N TYR D 32 -185.982 0.173 18.450 1.00150.19 ATOM 154 CA TYR D 32 -187.416 0.198 18.172 1.00140.03 ATOM 155 C TYR D 32 -187.753 1.282 17.143 1.00140.99 ATOM 156 O TYR D 32 -188.910 1.706 17.083 1.00144.37 ATOM 157 CB TYR D 32 -188.231 0.399 19.476 1.00121.15 ATOM 158 N VAL D 33 -186.763 1.739 16.355 1.00142.50 ATOM 159 CA VAL D 33 -186.817 2.766 15.302 1.00140.76 ATOM 160 C VAL D 33 -186.652 4.173 15.877 1.00140.68 ATOM 161 O VAL D 33 -187.322 4.532 16.852 1.00141.43 ATOM 162 CB VAL D 33 -188.105 2.669 14.465 1.00140.58 ATOM 163 N GLU D 34 -185.759 4.980 15.279 1.00140.04 ATOM 164 CA GLU D 34 -185.569 6.375 15.696 1.00144.23 ATOM 165 C GLU D 34 -184.705 7.185 14.729 1.00146.43 ATOM 166 O GLU D 34 -184.684 6.896 13.526 1.00145.66 ATOM 167 CB GLU D 34 -184.959 6.454 17.101 1.00136.87 ATOM 168 N VAL D 35 -183.970 8.175 15.274 1.00149.61 ATOM 169 CA VAL D 35 -183.317 9.299 14.580 1.00149.13 ATOM 170 C VAL D 35 -182.826 8.967 13.175 1.00150.35 ATOM 171 O VAL D 35 -182.230 7.909 12.942 1.00147.25 ATOM 172 CB VAL D 35 -182.144 9.864 15.413 1.00132.17 ATOM 173 N CYS D 36 -183.057 9.898 12.241 1.00153.59 ATOM 174 CA CYS D 36 -182.794 9.752 10.808 1.00153.31 ATOM 175 C CYS D 36 -183.640 8.647 10.179 1.00152.81 ATOM 176 O CYS D 36 -183.959 7.639 10.818 1.00150.01 ATOM 177 CB CYS D 36 -181.303 9.508 10.554 1.00145.08 ATOM 178 N SER D 37 -184.000 8.829 8.904 1.00154.29 ATOM 179 CA SER D 37 -184.853 7.892 8.194 1.00152.60 ATOM 180 C SER D 37 -184.027 7.199 7.122 1.00155.99 ATOM 181 O SER D 37 -183.324 6.209 7.424 1.00150.66 ATOM 182 CB SER D 37 -186.074 8.643 7.648 1.00149.43 ATOM 183 N LYS D 38 -184.043 7.668 5.871 1.00161.20 ATOM 184 CA LYS D 38 -183.434 6.942 4.763 1.00159.70 ATOM 185 C LYS D 38 -182.168 7.614 4.244 1.00159.07 ATOM 186 O LYS D 38 -181.292 7.988 5.031 1.00150.79 ATOM 187 CB LYS D 38 -184.436 6.791 3.615 1.00154.23 ATOM 188 N CYS D 39 -182.069 7.743 2.913 1.00161.26 ATOM 189 CA CYS D 39 -180.994 8.426 2.191 1.00159.10 ATOM 190 C CYS D 39 -181.423 8.585 0.733 1.00157.45 ATOM 191 O CYS D 39 -181.998 9.611 0.353 1.00156.17 ATOM 192 CB CYS D 39 -179.668 7.660 2.285 1.00153.33 ATOM 193 N HIS D 40 -181.171 7.556 -0.077 1.00158.95 ATOM 194 CA HIS D 40 -181.703 7.397 -1.428 1.00160.62 ATOM 195 C HIS D 40 -181.273 8.506 -2.387 1.00160.76 ATOM 196 O HIS D 40 -181.926 9.559 -2.450 1.00160.57 ATOM 197 CB HIS D 40 -183.235 7.315 -1.385 1.00156.90 ATOM 198 N PRO D 41 -180.187 8.300 -3.178 1.00158.74 ATOM 199 CA PRO D 41 -179.965 9.147 -4.363 1.00149.87 ATOM 200 C PRO D 41 -180.988 8.814 -5.439 1.00150.07 ATOM 201 O PRO D 41 -182.063 8.298 -5.115 1.00152.41 ATOM 202 CB PRO D 41 -178.535 8.799 -4.799 1.00140.07 ATOM 203 N PHE D 42 -180.682 9.080 -6.711 1.00144.64 ATOM 204 CA PHE D 42 -181.672 8.906 -7.773 1.00141.32 ATOM 205 C PHE D 42 -182.934 9.681 -7.426 1.00143.18 ATOM 206 O PHE D 42 -183.192 10.750 -7.988 1.00141.56 ATOM 207 CB PHE D 42 -181.998 7.425 -7.987 1.00135.02 ATOM 208 N TYR D 43 -183.710 9.149 -6.473 1.00145.28 ATOM 209 CA TYR D 43 -184.786 9.900 -5.840 1.00146.49 ATOM 210 C TYR D 43 -184.314 11.266 -5.356 1.00147.65 ATOM 211 O TYR D 43 -185.147 12.136 -5.075 1.00152.67 ATOM 212 CB TYR D 43 -185.364 9.094 -4.672 1.00151.57 ATOM 213 N THR D 44 -182.999 11.472 -5.244 1.00144.55 ATOM 214 CA THR D 44 -182.454 12.819 -5.192 1.00146.14 ATOM 215 C THR D 44 -182.678 13.606 -6.490 1.00143.04 ATOM 216 O THR D 44 -182.193 14.740 -6.577 1.00139.66 ATOM 217 CB THR D 44 -180.955 12.777 -4.868 1.00147.79 ATOM 218 N GLY D 45 -183.358 13.046 -7.497 1.00142.32 ATOM 219 CA GLY D 45 -183.787 13.812 -8.665 1.00140.32 ATOM 220 C GLY D 45 -184.735 14.962 -8.357 1.00143.48 ATOM 221 O GLY D 45 -185.145 15.669 -9.290 1.00143.10 ATOM 222 N GLN D 46 -185.098 15.165 -7.084 1.00143.14 ATOM 223 CA GLN D 46 -185.794 16.375 -6.664 1.00138.00 ATOM 224 C GLN D 46 -184.861 17.565 -6.869 1.00138.88 ATOM 225 O GLN D 46 -184.391 18.176 -5.902 1.00133.03 ATOM 226 CB GLN D 46 -186.263 16.271 -5.209 1.00129.03 ATOM 227 N GLN D 47 -184.583 17.900 -8.134 1.00138.44 ATOM 228 CA GLN D 47 -183.662 18.988 -8.413 1.00133.20 ATOM 229 C GLN D 47 -183.639 19.516 -9.846 1.00136.37 ATOM 230 O GLN D 47 -182.776 20.350 -10.139 1.00143.49 ATOM 231 CB GLN D 47 -182.242 18.559 -8.056 1.00135.66 ATOM 232 N ARG D 48 -184.517 19.080 -10.742 1.00130.00 ATOM 233 CA ARG D 48 -184.402 19.625 -12.095 1.00134.35 ATOM 234 C ARG D 48 -185.562 19.183 -12.969 1.00137.26 ATOM 235 O ARG D 48 -186.450 18.442 -12.552 1.00137.44 ATOM 236 CB ARG D 48 -183.108 19.205 -12.761 1.00136.14 ATOM 237 N PHE D 49 -185.488 19.643 -14.236 1.00136.60 ATOM 238 CA PHE D 49 -186.348 19.293 -15.376 1.00133.20 ATOM 239 C PHE D 49 -185.520 19.088 -16.664 1.00129.61 ATOM 240 O PHE D 49 -184.476 19.720 -16.853 1.00127.65 ATOM 241 CB PHE D 49 -187.406 20.378 -15.627 1.00122.20 TER