HEADER TRANSCRIPTION 31-DEC-69 7ML0 TITLE RNA polymerase II pre-initiation complex (PIC1) COMPND MOL_ID: 23; COMPND 2 MOLECULE: DNA-directed RNA polymerase II subunit RPB4; COMPND 3 CHAIN: 4; EXPDTA ELECTRON MICROSCOPY DBREF 7ML0 4 1 338 PDB 7ML0 7ML0 1 338 SEQRES 1 4 38 GLY PHE ILE CYS SER VAL CYS LEU CYS VAL LEU SER ILE SEQRES 2 4 38 ILE PRO PRO GLY ASN LYS CYS PRO ALA CYS ASP SER GLN SEQRES 3 4 38 PHE ASP GLU HIS VAL ILE ALA LYS LEU LYS ARG LYS ATOM 1 N GLY 4 286 151.549 84.830 121.917 1.00 0.00 ATOM 2 CA GLY 4 286 150.974 84.711 123.229 1.00 0.00 ATOM 3 C GLY 4 286 149.535 84.257 123.187 1.00 0.00 ATOM 4 O GLY 4 286 148.937 84.016 122.139 1.00 0.00 ATOM 5 N PHE 4 287 148.984 84.100 124.384 1.00 0.00 ATOM 6 CA PHE 4 287 147.549 83.936 124.577 1.00 0.00 ATOM 7 C PHE 4 287 147.230 84.534 125.941 1.00 0.00 ATOM 8 O PHE 4 287 147.299 83.847 126.961 1.00 0.00 ATOM 9 CB PHE 4 287 147.133 82.480 124.504 1.00 0.00 ATOM 10 CG PHE 4 287 146.588 82.091 123.192 1.00 0.00 ATOM 11 CD1 PHE 4 287 146.102 83.046 122.333 1.00 0.00 ATOM 12 CD2 PHE 4 287 146.556 80.773 122.813 1.00 0.00 ATOM 13 CE1 PHE 4 287 145.599 82.692 121.122 1.00 0.00 ATOM 14 CE2 PHE 4 287 146.052 80.415 121.599 1.00 0.00 ATOM 15 CZ PHE 4 287 145.572 81.377 120.751 1.00 0.00 ATOM 16 N ILE 4 288 146.894 85.807 125.951 1.00 0.00 ATOM 17 CA ILE 4 288 146.461 86.418 127.192 1.00 0.00 ATOM 18 C ILE 4 288 144.973 86.178 127.332 1.00 0.00 ATOM 19 O ILE 4 288 144.207 86.386 126.386 1.00 0.00 ATOM 20 CB ILE 4 288 146.806 87.909 127.236 1.00 0.00 ATOM 21 CG1 ILE 4 288 146.377 88.498 128.582 1.00 0.00 ATOM 22 CG2 ILE 4 288 146.187 88.640 126.070 1.00 0.00 ATOM 23 CD1 ILE 4 288 144.964 89.034 128.615 1.00 0.00 ATOM 24 N CYS 4 289 144.563 85.716 128.503 1.00 0.00 ATOM 25 CA CYS 4 289 143.185 85.286 128.612 1.00 0.00 ATOM 26 C CYS 4 289 142.219 86.439 128.432 1.00 0.00 ATOM 27 O CYS 4 289 141.640 86.625 127.361 1.00 0.00 ATOM 28 CB CYS 4 289 142.941 84.640 129.978 1.00 0.00 ATOM 29 SG CYS 4 289 142.715 85.781 131.377 1.00 0.00 ATOM 30 N SER 4 290 142.121 87.264 129.455 1.00 0.00 ATOM 31 CA SER 4 290 140.923 88.055 129.648 1.00 0.00 ATOM 32 C SER 4 290 141.158 88.959 130.827 1.00 0.00 ATOM 33 O SER 4 290 142.302 89.212 131.205 1.00 0.00 ATOM 34 CB SER 4 290 139.708 87.174 129.892 1.00 0.00 ATOM 35 OG SER 4 290 138.657 87.948 130.432 1.00 0.00 ATOM 36 N VAL 4 291 140.068 89.412 131.425 1.00 0.00 ATOM 37 CA VAL 4 291 140.096 90.095 132.706 1.00 0.00 ATOM 38 C VAL 4 291 141.113 89.438 133.627 1.00 0.00 ATOM 39 O VAL 4 291 141.729 90.117 134.452 1.00 0.00 ATOM 40 CB VAL 4 291 138.702 90.082 133.346 1.00 0.00 ATOM 41 CG1 VAL 4 291 138.230 88.657 133.513 1.00 0.00 ATOM 42 CG2 VAL 4 291 138.718 90.788 134.677 1.00 0.00 ATOM 43 N CYS 4 292 141.321 88.125 133.503 1.00 0.00 ATOM 44 CA CYS 4 292 142.402 87.523 134.270 1.00 0.00 ATOM 45 C CYS 4 292 143.738 88.124 133.894 1.00 0.00 ATOM 46 O CYS 4 292 144.580 88.367 134.763 1.00 0.00 ATOM 47 CB CYS 4 292 142.481 86.023 134.060 1.00 0.00 ATOM 48 SG CYS 4 292 143.885 85.381 135.014 1.00 0.00 ATOM 49 N LEU 4 293 143.958 88.340 132.603 1.00 0.00 ATOM 50 CA LEU 4 293 145.200 88.863 132.056 1.00 0.00 ATOM 51 C LEU 4 293 146.313 87.836 132.048 1.00 0.00 ATOM 52 O LEU 4 293 147.441 88.163 131.678 1.00 0.00 ATOM 53 CB LEU 4 293 145.674 90.113 132.799 1.00 0.00 ATOM 54 CG LEU 4 293 145.808 91.340 131.919 1.00 0.00 ATOM 55 CD1 LEU 4 293 146.950 91.151 130.968 1.00 0.00 ATOM 56 CD2 LEU 4 293 144.532 91.545 131.159 1.00 0.00 ATOM 57 N CYS 4 294 146.033 86.601 132.442 1.00 0.00 ATOM 58 CA CYS 4 294 147.073 85.591 132.440 1.00 0.00 ATOM 59 C CYS 4 294 147.593 85.376 131.027 1.00 0.00 ATOM 60 O CYS 4 294 146.932 85.693 130.041 1.00 0.00 ATOM 61 CB CYS 4 294 146.548 84.275 133.003 1.00 0.00 ATOM 62 N VAL 4 295 148.800 84.837 130.940 1.00 0.00 ATOM 63 CA VAL 4 295 149.463 84.578 129.672 1.00 0.00 ATOM 64 C VAL 4 295 149.492 83.079 129.457 1.00 0.00 ATOM 65 O VAL 4 295 149.893 82.327 130.350 1.00 0.00 ATOM 66 CB VAL 4 295 150.882 85.155 129.659 1.00 0.00 ATOM 67 CG1 VAL 4 295 151.506 84.965 128.303 1.00 0.00 ATOM 68 CG2 VAL 4 295 150.841 86.605 130.035 1.00 0.00 ATOM 69 N LEU 4 296 149.060 82.638 128.283 1.00 0.00 ATOM 70 CA LEU 4 296 148.899 81.218 128.050 1.00 0.00 ATOM 71 C LEU 4 296 149.430 80.847 126.682 1.00 0.00 ATOM 72 O LEU 4 296 149.756 81.701 125.857 1.00 0.00 ATOM 73 CB LEU 4 296 147.440 80.789 128.160 1.00 0.00 ATOM 74 CG LEU 4 296 146.874 80.840 129.570 1.00 0.00 ATOM 75 CD1 LEU 4 296 146.359 82.224 129.903 1.00 0.00 ATOM 76 CD2 LEU 4 296 145.780 79.814 129.715 1.00 0.00 ATOM 77 N SER 4 297 149.547 79.548 126.476 1.00 0.00 ATOM 78 CA SER 4 297 149.712 78.933 125.176 1.00 0.00 ATOM 79 C SER 4 297 148.380 78.317 124.757 1.00 0.00 ATOM 80 O SER 4 297 147.348 78.538 125.398 1.00 0.00 ATOM 81 CB SER 4 297 150.826 77.894 125.220 1.00 0.00 ATOM 82 OG SER 4 297 150.270 76.609 125.016 1.00 0.00 ATOM 83 N ILE 4 298 148.403 77.508 123.702 1.00 0.00 ATOM 84 CA ILE 4 298 147.221 76.836 123.167 1.00 0.00 ATOM 85 C ILE 4 298 146.723 75.809 124.169 1.00 0.00 ATOM 86 O ILE 4 298 145.792 75.046 123.892 1.00 0.00 ATOM 87 CB ILE 4 298 147.517 76.174 121.811 1.00 0.00 ATOM 88 N ILE 4 299 147.342 75.790 125.340 1.00 0.00 ATOM 89 CA ILE 4 299 147.077 74.815 126.391 1.00 0.00 ATOM 90 C ILE 4 299 145.730 74.920 127.108 1.00 0.00 ATOM 91 O ILE 4 299 145.286 73.901 127.655 1.00 0.00 ATOM 92 CB ILE 4 299 148.202 74.875 127.436 1.00 0.00 ATOM 93 N PRO 4 300 145.048 76.066 127.164 1.00 0.00 ATOM 94 CA PRO 4 300 144.128 76.295 128.269 1.00 0.00 ATOM 95 C PRO 4 300 143.042 75.244 128.299 1.00 0.00 ATOM 96 O PRO 4 300 142.613 74.734 127.246 1.00 0.00 ATOM 97 CB PRO 4 300 143.551 77.685 127.965 1.00 0.00 ATOM 98 CG PRO 4 300 144.359 78.211 126.841 1.00 0.00 ATOM 99 CD PRO 4 300 144.746 77.019 126.090 1.00 0.00 ATOM 100 N PRO 4 301 142.558 74.893 129.477 1.00 0.00 ATOM 101 CA PRO 4 301 141.592 73.794 129.593 1.00 0.00 ATOM 102 C PRO 4 301 140.220 74.145 129.045 1.00 0.00 ATOM 103 O PRO 4 301 139.252 73.420 129.282 1.00 0.00 ATOM 104 CB PRO 4 301 141.531 73.537 131.104 1.00 0.00 ATOM 105 CG PRO 4 301 142.745 74.203 131.667 1.00 0.00 ATOM 106 CD PRO 4 301 143.008 75.375 130.789 1.00 0.00 ATOM 107 N GLY 4 302 140.115 75.264 128.335 1.00 0.00 ATOM 108 CA GLY 4 302 138.847 75.677 127.780 1.00 0.00 ATOM 109 C GLY 4 302 137.886 76.250 128.788 1.00 0.00 ATOM 110 O GLY 4 302 136.689 76.338 128.498 1.00 0.00 ATOM 111 N ASN 4 303 138.376 76.647 129.956 1.00 0.00 ATOM 112 CA ASN 4 303 137.535 77.068 131.060 1.00 0.00 ATOM 113 C ASN 4 303 138.428 77.534 132.190 1.00 0.00 ATOM 114 O ASN 4 303 139.577 77.101 132.299 1.00 0.00 ATOM 115 CB ASN 4 303 136.664 75.912 131.536 1.00 0.00 ATOM 116 CG ASN 4 303 137.408 74.603 131.520 1.00 0.00 ATOM 117 OD1 ASN 4 303 138.621 74.570 131.708 1.00 0.00 ATOM 118 ND2 ASN 4 303 136.693 73.517 131.273 1.00 0.00 ATOM 119 N LYS 4 304 137.888 78.414 133.028 1.00 0.00 ATOM 120 CA LYS 4 304 138.433 78.643 134.359 1.00 0.00 ATOM 121 C LYS 4 304 139.913 79.003 134.288 1.00 0.00 ATOM 122 O LYS 4 304 140.782 78.208 134.640 1.00 0.00 ATOM 123 CB LYS 4 304 138.204 77.413 135.242 1.00 0.00 ATOM 124 CG LYS 4 304 137.570 77.716 136.585 1.00 0.00 ATOM 125 CD LYS 4 304 136.223 77.031 136.731 1.00 0.00 ATOM 126 CE LYS 4 304 135.225 77.547 135.712 1.00 0.00 ATOM 127 NZ LYS 4 304 134.918 78.987 135.920 1.00 0.00 ATOM 128 N CYS 4 305 140.180 80.190 133.758 1.00 0.00 ATOM 129 CA CYS 4 305 141.546 80.632 133.522 1.00 0.00 ATOM 130 C CYS 4 305 142.451 80.238 134.669 1.00 0.00 ATOM 131 O CYS 4 305 142.154 80.549 135.828 1.00 0.00 ATOM 132 CB CYS 4 305 141.631 82.141 133.348 1.00 0.00 ATOM 133 SG CYS 4 305 143.352 82.658 133.275 1.00 0.00 ATOM 134 N PRO 4 306 143.573 79.598 134.402 1.00 0.00 ATOM 135 CA PRO 4 306 144.308 79.005 135.517 1.00 0.00 ATOM 136 C PRO 4 306 145.018 80.066 136.329 1.00 0.00 ATOM 137 O PRO 4 306 146.113 79.858 136.851 1.00 0.00 ATOM 138 CB PRO 4 306 145.300 78.074 134.816 1.00 0.00 ATOM 139 N ALA 4 307 144.371 81.217 136.439 1.00 0.00 ATOM 140 CA ALA 4 307 144.500 82.094 137.586 1.00 0.00 ATOM 141 C ALA 4 307 143.192 82.750 137.956 1.00 0.00 ATOM 142 O ALA 4 307 143.059 83.222 139.088 1.00 0.00 ATOM 143 CB ALA 4 307 145.543 83.178 137.325 1.00 0.00 ATOM 144 N CYS 4 308 142.215 82.783 137.060 1.00 0.00 ATOM 145 CA CYS 4 308 140.912 83.342 137.360 1.00 0.00 ATOM 146 C CYS 4 308 139.875 82.275 137.080 1.00 0.00 ATOM 147 O CYS 4 308 139.835 81.706 135.986 1.00 0.00 ATOM 148 CB CYS 4 308 140.622 84.610 136.547 1.00 0.00 ATOM 149 SG CYS 4 308 140.454 84.422 134.741 1.00 0.00 ATOM 150 N ASP 4 309 139.030 82.014 138.067 1.00 0.00 ATOM 151 CA ASP 4 309 137.979 81.022 137.905 1.00 0.00 ATOM 152 C ASP 4 309 136.973 81.626 136.936 1.00 0.00 ATOM 153 O ASP 4 309 135.936 82.175 137.309 1.00 0.00 ATOM 154 CB ASP 4 309 137.350 80.672 139.245 1.00 0.00 ATOM 155 N SER 4 310 137.308 81.541 135.657 1.00 0.00 ATOM 156 CA SER 4 310 136.507 82.168 134.617 1.00 0.00 ATOM 157 C SER 4 310 136.369 81.165 133.482 1.00 0.00 ATOM 158 O SER 4 310 137.276 81.023 132.657 1.00 0.00 ATOM 159 CB SER 4 310 137.147 83.463 134.145 1.00 0.00 ATOM 160 N GLN 4 311 135.249 80.456 133.460 1.00 0.00 ATOM 161 CA GLN 4 311 134.978 79.567 132.349 1.00 0.00 ATOM 162 C GLN 4 311 134.975 80.377 131.069 1.00 0.00 ATOM 163 O GLN 4 311 134.381 81.455 131.003 1.00 0.00 ATOM 164 CB GLN 4 311 133.641 78.864 132.545 1.00 0.00 ATOM 165 CG GLN 4 311 133.567 77.499 131.896 1.00 0.00 ATOM 166 CD GLN 4 311 133.644 77.557 130.389 1.00 0.00 ATOM 167 OE1 GLN 4 311 134.279 76.719 129.758 1.00 0.00 ATOM 168 NE2 GLN 4 311 132.986 78.545 129.801 1.00 0.00 ATOM 169 N PHE 4 312 135.649 79.869 130.054 1.00 0.00 ATOM 170 CA PHE 4 312 135.818 80.648 128.846 1.00 0.00 ATOM 171 C PHE 4 312 134.612 80.523 127.944 1.00 0.00 ATOM 172 O PHE 4 312 133.850 79.558 128.017 1.00 0.00 ATOM 173 CB PHE 4 312 137.071 80.216 128.110 1.00 0.00 ATOM 174 CG PHE 4 312 138.316 80.674 128.775 1.00 0.00 ATOM 175 CD1 PHE 4 312 138.644 80.209 130.034 1.00 0.00 ATOM 176 CD2 PHE 4 312 139.143 81.596 128.166 1.00 0.00 ATOM 177 CE1 PHE 4 312 139.778 80.632 130.662 1.00 0.00 ATOM 178 CE2 PHE 4 312 140.286 82.024 128.792 1.00 0.00 ATOM 179 CZ PHE 4 312 140.604 81.541 130.043 1.00 0.00 ATOM 180 N ASP 4 313 134.440 81.519 127.090 1.00 0.00 ATOM 181 CA ASP 4 313 133.337 81.500 126.147 1.00 0.00 ATOM 182 C ASP 4 313 133.556 80.345 125.181 1.00 0.00 ATOM 183 O ASP 4 313 134.422 80.412 124.303 1.00 0.00 ATOM 184 CB ASP 4 313 133.247 82.834 125.418 1.00 0.00 ATOM 185 N GLU 4 314 132.762 79.283 125.353 1.00 0.00 ATOM 186 CA GLU 4 314 132.999 78.040 124.629 1.00 0.00 ATOM 187 C GLU 4 314 132.904 78.249 123.129 1.00 0.00 ATOM 188 O GLU 4 314 133.755 77.768 122.372 1.00 0.00 ATOM 189 CB GLU 4 314 132.006 76.976 125.085 1.00 0.00 ATOM 190 N HIS 4 315 131.878 78.965 122.678 1.00 0.00 ATOM 191 CA HIS 4 315 131.810 79.313 121.268 1.00 0.00 ATOM 192 C HIS 4 315 133.040 80.106 120.860 1.00 0.00 ATOM 193 O HIS 4 315 133.673 79.818 119.838 1.00 0.00 ATOM 194 CB HIS 4 315 130.536 80.105 120.989 1.00 0.00 ATOM 195 N VAL 4 316 133.406 81.100 121.669 1.00 0.00 ATOM 196 CA VAL 4 316 134.602 81.879 121.380 1.00 0.00 ATOM 197 C VAL 4 316 135.838 81.005 121.479 1.00 0.00 ATOM 198 O VAL 4 316 136.740 81.084 120.639 1.00 0.00 ATOM 199 CB VAL 4 316 134.693 83.088 122.322 1.00 0.00 ATOM 200 N ILE 4 317 135.901 80.158 122.504 1.00 0.00 ATOM 201 CA ILE 4 317 137.013 79.226 122.609 1.00 0.00 ATOM 202 C ILE 4 317 137.117 78.409 121.334 1.00 0.00 ATOM 203 O ILE 4 317 138.204 78.235 120.775 1.00 0.00 ATOM 204 CB ILE 4 317 136.845 78.329 123.847 1.00 0.00 ATOM 205 N ALA 4 318 135.979 77.929 120.834 1.00 0.00 ATOM 206 CA ALA 4 318 135.980 77.191 119.579 1.00 0.00 ATOM 207 C ALA 4 318 136.465 78.064 118.437 1.00 0.00 ATOM 208 O ALA 4 318 137.200 77.599 117.558 1.00 0.00 ATOM 209 CB ALA 4 318 134.583 76.652 119.287 1.00 0.00 ATOM 210 N LYS 4 319 136.084 79.341 118.443 1.00 0.00 ATOM 211 CA LYS 4 319 136.514 80.235 117.378 1.00 0.00 ATOM 212 C LYS 4 319 138.032 80.313 117.299 1.00 0.00 ATOM 213 O LYS 4 319 138.580 80.673 116.252 1.00 0.00 ATOM 214 CB LYS 4 319 135.917 81.624 117.584 1.00 0.00 ATOM 215 N LEU 4 320 138.725 79.980 118.388 1.00 0.00 ATOM 216 CA LEU 4 320 140.181 79.929 118.340 1.00 0.00 ATOM 217 C LEU 4 320 140.674 78.792 117.456 1.00 0.00 ATOM 218 O LEU 4 320 141.771 78.873 116.894 1.00 0.00 ATOM 219 CB LEU 4 320 140.747 79.785 119.751 1.00 0.00 ATOM 220 N LYS 4 321 139.881 77.738 117.317 1.00 0.00 ATOM 221 CA LYS 4 321 140.254 76.594 116.500 1.00 0.00 ATOM 222 C LYS 4 321 140.046 76.835 115.011 1.00 0.00 ATOM 223 O LYS 4 321 140.105 75.878 114.232 1.00 0.00 ATOM 224 CB LYS 4 321 139.461 75.362 116.941 1.00 0.00 ATOM 225 N ARG 4 322 139.831 78.086 114.599 1.00 0.00 ATOM 226 CA ARG 4 322 139.364 78.379 113.246 1.00 0.00 ATOM 227 C ARG 4 322 140.395 78.072 112.161 1.00 0.00 ATOM 228 O ARG 4 322 140.042 78.083 110.976 1.00 0.00 ATOM 229 CB ARG 4 322 138.942 79.848 113.155 1.00 0.00 ATOM 230 N LYS 4 323 141.647 77.811 112.525 1.00 0.00 ATOM 231 CA LYS 4 323 142.711 77.613 111.540 1.00 0.00 ATOM 232 C LYS 4 323 142.460 76.434 110.598 1.00 0.00 ATOM 233 O LYS 4 323 143.001 76.384 109.491 1.00 0.00 ATOM 234 CB LYS 4 323 144.049 77.421 112.254 1.00 0.00 ATOM 235 ZN ZN 4 401 142.360 84.729 133.434 1.00 0.00 TER