HEADER IMMUNE SYSTEM 31-DEC-69 7N8Q TITLE Rhesusized RV305 DH677.3 Fab bound to Clade A/E 93TH057 HIV-1 gp120 TITLE 2 core. COMPND MOL_ID: 2; COMPND 2 MOLECULE: M48U1 CD4 MIMETIC PEPTIDE; COMPND 3 CHAIN: N; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.90 ANGSTORMS DBREF 7N8Q N 1 34 PDB 7N8Q 7N8Q 1 34 SEQRES 1 N 28 MPT ASN LEU HIS PHE CYS GLN LEU ARG CYS LYS SER LEU SEQRES 2 N 28 GLY LEU LEU GLY ARG CYS ALA DPR THR U2X CYS ALA CYS SEQRES 3 N 28 VAL NH2 ATOM 1 CA MPT N 1 -33.557 3.198 12.299 1.00 72.99 ATOM 2 C MPT N 1 -34.914 2.566 11.969 1.00 62.17 ATOM 3 O MPT N 1 -35.047 1.337 12.214 1.00 55.17 ATOM 4 CB MPT N 1 -32.460 3.110 11.256 1.00 76.97 ATOM 5 SG MPT N 1 -33.031 2.573 9.622 1.00 66.38 ATOM 6 N ASN N 2 -36.230 2.734 12.119 1.00 61.15 ATOM 7 CA ASN N 2 -37.413 1.975 11.621 1.00 65.69 ATOM 8 C ASN N 2 -37.194 1.663 10.142 1.00 70.59 ATOM 9 O ASN N 2 -37.298 2.590 9.326 1.00 82.42 ATOM 10 CB ASN N 2 -38.711 2.757 11.827 1.00 64.46 ATOM 11 CG ASN N 2 -39.932 1.953 11.455 1.00 66.99 ATOM 12 OD1 ASN N 2 -39.945 1.242 10.450 1.00 72.62 ATOM 13 ND2 ASN N 2 -40.976 2.064 12.260 1.00 71.01 ATOM 14 N LEU N 3 -36.918 0.409 9.790 1.00 64.54 ATOM 15 CA LEU N 3 -36.377 0.152 8.442 1.00 63.75 ATOM 16 C LEU N 3 -37.463 -0.247 7.449 1.00 67.08 ATOM 17 O LEU N 3 -37.491 0.325 6.346 1.00 72.95 ATOM 18 CB LEU N 3 -35.300 -0.917 8.458 1.00 56.97 ATOM 19 CG LEU N 3 -34.767 -1.042 7.044 1.00 51.25 ATOM 20 CD1 LEU N 3 -33.842 0.126 6.758 1.00 51.89 ATOM 21 CD2 LEU N 3 -34.079 -2.354 6.812 1.00 45.29 ATOM 22 N HIS N 4 -38.311 -1.215 7.794 1.00 75.93 ATOM 23 CA HIS N 4 -39.415 -1.635 6.895 1.00 91.36 ATOM 24 C HIS N 4 -40.048 -0.358 6.342 1.00 89.12 ATOM 25 O HIS N 4 -40.422 -0.337 5.158 1.00 95.78 ATOM 26 CB HIS N 4 -40.436 -2.563 7.581 1.00 97.28 ATOM 27 CG HIS N 4 -41.197 -1.958 8.719 1.00101.34 ATOM 28 ND1 HIS N 4 -41.802 -0.713 8.646 1.00104.44 ATOM 29 CD2 HIS N 4 -41.503 -2.449 9.942 1.00104.50 ATOM 30 CE1 HIS N 4 -42.409 -0.449 9.786 1.00107.92 ATOM 31 NE2 HIS N 4 -42.243 -1.500 10.597 1.00109.88 ATOM 32 N PHE N 5 -40.039 0.712 7.138 1.00 78.37 ATOM 33 CA PHE N 5 -40.629 2.018 6.752 1.00 74.78 ATOM 34 C PHE N 5 -39.692 2.810 5.833 1.00 70.96 ATOM 35 O PHE N 5 -40.200 3.485 4.915 1.00 80.96 ATOM 36 CB PHE N 5 -41.008 2.830 7.991 1.00 76.57 ATOM 37 CG PHE N 5 -41.232 4.299 7.740 1.00 76.32 ATOM 38 CD1 PHE N 5 -40.347 5.245 8.222 1.00 78.95 ATOM 39 CD2 PHE N 5 -42.322 4.738 7.012 1.00 83.49 ATOM 40 CE1 PHE N 5 -40.560 6.598 7.994 1.00 83.85 ATOM 41 CE2 PHE N 5 -42.523 6.091 6.777 1.00 88.78 ATOM 42 CZ PHE N 5 -41.651 7.021 7.280 1.00 87.17 ATOM 43 N CYS N 6 -38.383 2.772 6.066 1.00 61.27 ATOM 44 CA CYS N 6 -37.442 3.552 5.246 1.00 56.97 ATOM 45 C CYS N 6 -37.523 2.978 3.846 1.00 53.81 ATOM 46 O CYS N 6 -37.486 3.735 2.869 1.00 65.38 ATOM 47 CB CYS N 6 -36.019 3.470 5.758 1.00 56.02 ATOM 48 SG CYS N 6 -34.867 4.199 4.584 1.00 63.32 ATOM 49 N GLN N 7 -37.661 1.669 3.779 1.00 48.63 ATOM 50 CA GLN N 7 -37.893 0.988 2.501 1.00 49.32 ATOM 51 C GLN N 7 -39.262 1.369 1.949 1.00 51.07 ATOM 52 O GLN N 7 -39.370 1.579 0.727 1.00 54.61 ATOM 53 CB GLN N 7 -37.773 -0.520 2.676 1.00 46.74 ATOM 54 CG GLN N 7 -36.514 -0.954 3.414 1.00 41.82 ATOM 55 CD GLN N 7 -36.606 -2.383 3.891 1.00 38.85 ATOM 56 OE1 GLN N 7 -37.672 -2.856 4.294 1.00 31.79 ATOM 57 NE2 GLN N 7 -35.483 -3.086 3.839 1.00 37.11 ATOM 58 N LEU N 8 -40.277 1.463 2.802 1.00 47.19 ATOM 59 CA LEU N 8 -41.628 1.836 2.316 1.00 49.75 ATOM 60 C LEU N 8 -41.561 3.156 1.543 1.00 67.17 ATOM 61 O LEU N 8 -42.228 3.279 0.499 1.00 77.13 ATOM 62 CB LEU N 8 -42.582 1.959 3.492 1.00 41.73 ATOM 63 CG LEU N 8 -43.981 2.455 3.166 1.00 38.84 ATOM 64 CD1 LEU N 8 -44.725 1.484 2.258 1.00 41.61 ATOM 65 CD2 LEU N 8 -44.726 2.623 4.461 1.00 38.66 ATOM 66 N ARG N 9 -40.802 4.112 2.072 1.00 68.00 ATOM 67 CA ARG N 9 -40.636 5.468 1.488 1.00 66.67 ATOM 68 C ARG N 9 -39.724 5.405 0.269 1.00 64.92 ATOM 69 O ARG N 9 -40.146 5.806 -0.808 1.00 83.26 ATOM 70 CB ARG N 9 -40.031 6.411 2.528 1.00 72.28 ATOM 71 CG ARG N 9 -40.974 6.756 3.671 1.00 80.43 ATOM 72 CD ARG N 9 -40.463 7.787 4.662 1.00 80.63 ATOM 73 NE ARG N 9 -39.013 7.839 4.701 1.00 85.31 ATOM 74 CZ ARG N 9 -38.259 7.602 5.764 1.00 86.78 ATOM 75 NH1 ARG N 9 -38.795 7.483 6.954 1.00 87.66 ATOM 76 NH2 ARG N 9 -36.952 7.472 5.620 1.00 90.54 ATOM 77 N CYS N 10 -38.498 4.953 0.470 1.00 55.92 ATOM 78 CA CYS N 10 -37.455 4.822 -0.574 1.00 58.54 ATOM 79 C CYS N 10 -38.022 4.055 -1.787 1.00 68.11 ATOM 80 O CYS N 10 -37.473 4.192 -2.889 1.00 64.89 ATOM 81 CB CYS N 10 -36.251 4.087 -0.024 1.00 53.14 ATOM 82 SG CYS N 10 -35.372 4.938 1.298 1.00 52.85 ATOM 83 N LYS N 11 -39.071 3.262 -1.586 1.00 69.72 ATOM 84 CA LYS N 11 -39.845 2.680 -2.700 1.00 71.61 ATOM 85 C LYS N 11 -40.298 3.780 -3.662 1.00 71.92 ATOM 86 O LYS N 11 -40.012 3.691 -4.869 1.00 76.54 ATOM 87 CB LYS N 11 -41.052 1.929 -2.144 1.00 76.64 ATOM 88 CG LYS N 11 -41.131 0.471 -2.552 1.00 83.48 ATOM 89 CD LYS N 11 -42.377 -0.201 -2.021 1.00 87.02 ATOM 90 CE LYS N 11 -42.095 -1.150 -0.874 1.00 90.16 ATOM 91 NZ LYS N 11 -43.327 -1.824 -0.389 1.00 90.58 ATOM 92 N SER N 12 -40.975 4.800 -3.145 1.00 67.24 ATOM 93 CA SER N 12 -41.561 5.883 -3.975 1.00 58.91 ATOM 94 C SER N 12 -40.487 6.545 -4.839 1.00 54.47 ATOM 95 O SER N 12 -40.843 7.148 -5.865 1.00 52.70 ATOM 96 CB SER N 12 -42.280 6.899 -3.134 1.00 52.95 ATOM 97 OG SER N 12 -43.469 6.344 -2.588 1.00 49.10 ATOM 98 N LEU N 13 -39.220 6.438 -4.448 1.00 46.75 ATOM 99 CA LEU N 13 -38.101 6.897 -5.297 1.00 47.20 ATOM 100 C LEU N 13 -37.513 5.744 -6.107 1.00 47.93 ATOM 101 O LEU N 13 -36.479 5.950 -6.763 1.00 47.28 ATOM 102 CB LEU N 13 -37.027 7.543 -4.419 1.00 45.59 ATOM 103 CG LEU N 13 -37.122 9.056 -4.228 1.00 47.21 ATOM 104 CD1 LEU N 13 -38.172 9.413 -3.187 1.00 47.76 ATOM 105 CD2 LEU N 13 -35.772 9.638 -3.832 1.00 46.23 ATOM 106 N GLY N 14 -38.131 4.567 -6.070 1.00 49.15 ATOM 107 CA GLY N 14 -37.628 3.388 -6.796 1.00 47.27 ATOM 108 C GLY N 14 -36.326 2.868 -6.221 1.00 48.02 ATOM 109 O GLY N 14 -35.471 2.385 -6.989 1.00 50.11 ATOM 110 N LEU N 15 -36.171 2.934 -4.901 1.00 48.88 ATOM 111 CA LEU N 15 -34.873 2.635 -4.263 1.00 42.70 ATOM 112 C LEU N 15 -35.048 1.648 -3.114 1.00 44.18 ATOM 113 O LEU N 15 -36.132 1.554 -2.508 1.00 38.90 ATOM 114 CB LEU N 15 -34.220 3.929 -3.773 1.00 33.58 ATOM 115 CG LEU N 15 -33.729 4.911 -4.834 1.00 30.30 ATOM 116 CD1 LEU N 15 -33.598 6.311 -4.255 1.00 29.66 ATOM 117 CD2 LEU N 15 -32.402 4.466 -5.432 1.00 28.74 ATOM 118 N LEU N 16 -33.959 0.949 -2.825 1.00 48.75 ATOM 119 CA LEU N 16 -33.856 0.049 -1.655 1.00 60.76 ATOM 120 C LEU N 16 -33.652 0.888 -0.394 1.00 59.58 ATOM 121 O LEU N 16 -32.895 1.876 -0.419 1.00 56.40 ATOM 122 CB LEU N 16 -32.670 -0.902 -1.855 1.00 67.39 ATOM 123 CG LEU N 16 -32.738 -2.317 -1.275 1.00 65.39 ATOM 124 CD1 LEU N 16 -34.048 -2.987 -1.623 1.00 65.67 ATOM 125 CD2 LEU N 16 -31.571 -3.155 -1.790 1.00 65.52 ATOM 126 N GLY N 17 -34.290 0.469 0.692 1.00 57.42 ATOM 127 CA GLY N 17 -34.131 1.130 1.994 1.00 54.38 ATOM 128 C GLY N 17 -33.161 0.390 2.877 1.00 49.67 ATOM 129 O GLY N 17 -33.251 -0.850 2.996 1.00 50.85 ATOM 130 N ARG N 18 -32.246 1.126 3.487 1.00 44.14 ATOM 131 CA ARG N 18 -31.246 0.518 4.379 1.00 38.13 ATOM 132 C ARG N 18 -30.956 1.493 5.500 1.00 41.97 ATOM 133 O ARG N 18 -30.911 2.713 5.268 1.00 37.31 ATOM 134 CB ARG N 18 -29.973 0.167 3.620 1.00 37.68 ATOM 135 CG ARG N 18 -28.704 0.453 4.408 1.00 41.11 ATOM 136 CD ARG N 18 -27.508 0.549 3.494 1.00 45.60 ATOM 137 NE ARG N 18 -27.414 -0.614 2.622 1.00 52.78 ATOM 138 CZ ARG N 18 -26.473 -0.793 1.706 1.00 55.67 ATOM 139 NH1 ARG N 18 -25.530 0.120 1.534 1.00 52.67 ATOM 140 NH2 ARG N 18 -26.478 -1.888 0.962 1.00 59.89 ATOM 141 N CYS N 19 -30.752 0.954 6.689 1.00 49.34 ATOM 142 CA CYS N 19 -30.464 1.798 7.859 1.00 45.13 ATOM 143 C CYS N 19 -29.097 2.445 7.712 1.00 39.99 ATOM 144 O CYS N 19 -28.108 1.760 7.453 1.00 37.70 ATOM 145 CB CYS N 19 -30.542 0.999 9.143 1.00 52.15 ATOM 146 SG CYS N 19 -32.253 0.696 9.635 1.00 61.73 ATOM 147 N ALA N 20 -29.063 3.757 7.868 1.00 42.13 ATOM 148 CA ALA N 20 -27.804 4.466 8.165 1.00 44.15 ATOM 149 C ALA N 20 -27.757 4.889 9.633 1.00 48.36 ATOM 150 O ALA N 20 -27.566 6.066 9.919 1.00 51.44 ATOM 151 CB ALA N 20 -27.635 5.634 7.233 1.00 46.33 ATOM 152 N DPR N 21 -27.795 3.954 10.606 1.00 51.95 ATOM 153 CA DPR N 21 -27.680 4.317 12.021 1.00 53.31 ATOM 154 CB DPR N 21 -26.611 3.316 12.461 1.00 51.65 ATOM 155 CG DPR N 21 -27.012 2.063 11.750 1.00 47.66 ATOM 156 CD DPR N 21 -27.478 2.532 10.393 1.00 50.29 ATOM 157 C DPR N 21 -28.917 4.208 12.926 1.00 61.67 ATOM 158 O DPR N 21 -29.073 3.276 13.711 1.00 75.56 ATOM 159 N THR N 22 -29.712 5.262 12.849 1.00 58.52 ATOM 160 CA THR N 22 -31.031 5.460 13.492 1.00 58.11 ATOM 161 C THR N 22 -31.856 6.114 12.390 1.00 52.53 ATOM 162 O THR N 22 -32.921 6.666 12.616 1.00 51.28 ATOM 163 CB THR N 22 -30.926 6.314 14.768 1.00 63.83 ATOM 164 OG1 THR N 22 -30.094 7.449 14.505 1.00 69.88 ATOM 165 CG2 THR N 22 -30.360 5.530 15.930 1.00 63.71 ATOM 166 N U2X N 29 -31.160 5.915 11.247 1.00 52.08 ATOM 167 C U2X N 29 -31.647 6.002 8.864 1.00 53.96 ATOM 168 O U2X N 29 -31.097 4.928 8.611 1.00 47.29 ATOM 169 CA U2X N 29 -31.355 6.795 10.145 1.00 52.85 ATOM 170 CB U2X N 29 -30.118 7.602 9.918 1.00 52.43 ATOM 171 CG U2X N 29 -29.852 8.825 10.764 1.00 38.73 ATOM 172 CD1 U2X N 29 -30.828 9.599 11.389 1.00 34.44 ATOM 173 CD2 U2X N 29 -28.504 9.193 10.833 1.00 30.25 ATOM 174 CE1 U2X N 29 -30.413 10.747 12.113 1.00 32.00 ATOM 175 CE2 U2X N 29 -28.092 10.328 11.528 1.00 27.72 ATOM 176 CZ U2X N 29 -29.048 11.125 12.162 1.00 28.32 ATOM 177 OH U2X N 29 -28.628 12.308 12.902 1.00 25.48 ATOM 178 C7 U2X N 29 -27.214 12.602 12.758 1.00 27.81 ATOM 179 C1 U2X N 29 -25.059 15.691 13.678 1.00 28.87 ATOM 180 C2 U2X N 29 -25.474 14.342 13.126 1.00 31.05 ATOM 181 C3 U2X N 29 -26.799 13.798 13.654 1.00 30.25 ATOM 182 C4 U2X N 29 -27.914 14.809 13.655 1.00 29.80 ATOM 183 C5 U2X N 29 -27.476 16.236 13.903 1.00 28.15 ATOM 184 C6 U2X N 29 -26.115 16.319 14.539 1.00 29.45 ATOM 185 N CYS N 30 -32.313 6.586 7.964 1.00 59.65 ATOM 186 CA CYS N 30 -32.840 5.921 6.762 1.00 57.93 ATOM 187 C CYS N 30 -32.130 6.426 5.506 1.00 48.74 ATOM 188 O CYS N 30 -32.212 7.622 5.207 1.00 47.49 ATOM 189 CB CYS N 30 -34.333 6.169 6.681 1.00 60.24 ATOM 190 SG CYS N 30 -34.953 6.169 4.987 1.00 69.44 ATOM 191 N ALA N 31 -31.459 5.525 4.794 1.00 44.09 ATOM 192 CA ALA N 31 -30.848 5.812 3.483 1.00 48.61 ATOM 193 C ALA N 31 -31.499 4.926 2.425 1.00 51.26 ATOM 194 O ALA N 31 -32.129 3.902 2.743 1.00 53.31 ATOM 195 CB ALA N 31 -29.350 5.618 3.524 1.00 47.30 ATOM 196 N CYS N 32 -31.330 5.309 1.170 1.00 54.80 ATOM 197 CA CYS N 32 -31.837 4.527 0.025 1.00 55.71 ATOM 198 C CYS N 32 -30.692 4.302 -0.960 1.00 60.54 ATOM 199 O CYS N 32 -29.980 5.259 -1.300 1.00 65.30 ATOM 200 CB CYS N 32 -32.993 5.205 -0.695 1.00 48.47 ATOM 201 SG CYS N 32 -34.209 6.117 0.307 1.00 50.02 ATOM 202 N VAL N 33 -30.545 3.069 -1.411 1.00 70.27 ATOM 203 CA VAL N 33 -29.586 2.714 -2.487 1.00 72.80 ATOM 204 C VAL N 33 -30.273 1.754 -3.454 1.00 88.30 ATOM 205 O VAL N 33 -31.437 1.966 -3.799 1.00 86.54 ATOM 206 CB VAL N 33 -28.312 2.104 -1.884 1.00 64.59 ATOM 207 CG1 VAL N 33 -27.371 3.187 -1.405 1.00 63.00 ATOM 208 CG2 VAL N 33 -28.658 1.138 -0.765 1.00 60.25 ATOM 209 N NH2 N 34 -29.588 0.755 -3.868 1.00 76.64 TER