HEADER RIBOSOME 31-DEC-69 7NRC TITLE Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome TITLE 2 with Rbg2, Gir2, A- and P-tRNA and eIF5A COMPND MOL_ID: 81; COMPND 2 MOLECULE: 60S ribosomal protein L41-A; COMPND 3 CHAIN: Lp; EXPDTA ELECTRON MICROSCOPY DBREF 7NRC L 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 Lp 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 Lp 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET L 1 355.946 349.595 367.760 1.00 50.74 ATOM 2 CA MET L 1 356.951 349.564 368.813 1.00 50.74 ATOM 3 C MET L 1 356.320 349.100 370.113 1.00 50.74 ATOM 4 O MET L 1 355.118 348.828 370.170 1.00 50.74 ATOM 5 CB MET L 1 357.606 350.935 368.999 1.00 50.74 ATOM 6 CG MET L 1 356.649 352.062 369.339 1.00 50.74 ATOM 7 SD MET L 1 357.292 353.670 368.835 1.00 50.74 ATOM 8 CE MET L 1 358.687 353.867 369.938 1.00 50.74 ATOM 9 N ARG L 2 357.165 348.982 371.133 1.00 41.26 ATOM 10 CA ARG L 2 356.719 348.711 372.493 1.00 41.26 ATOM 11 C ARG L 2 355.744 349.775 372.979 1.00 41.26 ATOM 12 O ARG L 2 355.886 350.963 372.671 1.00 41.26 ATOM 13 CB ARG L 2 357.930 348.628 373.421 1.00 41.26 ATOM 14 CG ARG L 2 357.733 347.804 374.677 1.00 41.26 ATOM 15 CD ARG L 2 358.936 347.952 375.594 1.00 41.26 ATOM 16 NE ARG L 2 358.686 347.464 376.946 1.00 41.26 ATOM 17 CZ ARG L 2 359.617 347.380 377.892 1.00 41.26 ATOM 18 NH1 ARG L 2 360.863 347.746 377.635 1.00 41.26 ATOM 19 NH2 ARG L 2 359.301 346.930 379.095 1.00 41.26 ATOM 20 N ALA L 3 354.749 349.322 373.747 1.00 40.22 ATOM 21 CA ALA L 3 353.645 350.177 374.171 1.00 40.22 ATOM 22 C ALA L 3 354.150 351.250 375.124 1.00 40.22 ATOM 23 O ALA L 3 353.659 352.386 375.105 1.00 40.22 ATOM 24 CB ALA L 3 352.540 349.334 374.804 1.00 40.22 ATOM 25 N LYS L 4 355.084 350.875 376.003 1.00 40.48 ATOM 26 CA LYS L 4 355.702 351.819 376.930 1.00 40.48 ATOM 27 C LYS L 4 356.393 352.947 376.172 1.00 40.48 ATOM 28 O LYS L 4 356.291 354.114 376.557 1.00 40.48 ATOM 29 CB LYS L 4 356.700 351.102 377.833 1.00 40.48 ATOM 30 CG LYS L 4 357.191 351.957 378.978 1.00 40.48 ATOM 31 CD LYS L 4 358.454 351.388 379.580 1.00 40.48 ATOM 32 CE LYS L 4 358.196 350.216 380.485 1.00 40.48 ATOM 33 NZ LYS L 4 359.216 350.123 381.566 1.00 40.48 ATOM 34 N TRP L 5 357.168 352.611 375.135 1.00 43.00 ATOM 35 CA TRP L 5 357.876 353.661 374.413 1.00 43.00 ATOM 36 C TRP L 5 356.918 354.484 373.568 1.00 43.00 ATOM 37 O TRP L 5 357.187 355.661 373.323 1.00 43.00 ATOM 38 CB TRP L 5 359.031 353.084 373.589 1.00 43.00 ATOM 39 CG TRP L 5 359.972 352.141 374.366 1.00 43.00 ATOM 40 CD1 TRP L 5 360.490 350.976 373.896 1.00 43.00 ATOM 41 CD2 TRP L 5 360.481 352.276 375.716 1.00 43.00 ATOM 42 NE1 TRP L 5 361.271 350.374 374.842 1.00 43.00 ATOM 43 CE2 TRP L 5 361.285 351.151 375.967 1.00 43.00 ATOM 44 CE3 TRP L 5 360.344 353.237 376.729 1.00 43.00 ATOM 45 CZ2 TRP L 5 361.936 350.960 377.173 1.00 43.00 ATOM 46 CZ3 TRP L 5 360.989 353.048 377.909 1.00 43.00 ATOM 47 CH2 TRP L 5 361.763 351.911 378.134 1.00 43.00 ATOM 48 N ARG L 6 355.836 353.880 373.069 1.00 45.38 ATOM 49 CA ARG L 6 354.759 354.687 372.504 1.00 45.38 ATOM 50 C ARG L 6 354.232 355.694 373.524 1.00 45.38 ATOM 51 O ARG L 6 354.007 356.865 373.191 1.00 45.38 ATOM 52 CB ARG L 6 353.632 353.774 372.039 1.00 45.38 ATOM 53 CG ARG L 6 352.523 354.404 371.201 1.00 45.38 ATOM 54 CD ARG L 6 352.689 354.556 369.700 1.00 45.38 ATOM 55 NE ARG L 6 351.548 355.342 369.221 1.00 45.38 ATOM 56 CZ ARG L 6 351.607 356.449 368.491 1.00 45.38 ATOM 57 NH1 ARG L 6 352.774 356.943 368.111 1.00 45.38 ATOM 58 NH2 ARG L 6 350.485 357.066 368.150 1.00 45.38 ATOM 59 N LYS L 7 354.071 355.260 374.778 1.00 39.48 ATOM 60 CA LYS L 7 353.631 356.158 375.839 1.00 39.48 ATOM 61 C LYS L 7 354.658 357.256 376.111 1.00 39.48 ATOM 62 O LYS L 7 354.286 358.419 376.280 1.00 39.48 ATOM 63 CB LYS L 7 353.314 355.328 377.079 1.00 39.48 ATOM 64 CG LYS L 7 352.336 355.924 378.070 1.00 39.48 ATOM 65 CD LYS L 7 351.966 354.836 379.065 1.00 39.48 ATOM 66 CE LYS L 7 351.834 355.309 380.473 1.00 39.48 ATOM 67 NZ LYS L 7 351.118 354.259 381.252 1.00 39.48 ATOM 68 N LYS L 8 355.951 356.908 376.151 1.00 39.46 ATOM 69 CA LYS L 8 356.992 357.906 376.420 1.00 39.46 ATOM 70 C LYS L 8 357.140 358.913 375.281 1.00 39.46 ATOM 71 O LYS L 8 357.316 360.113 375.535 1.00 39.46 ATOM 72 CB LYS L 8 358.344 357.256 376.722 1.00 39.46 ATOM 73 CG LYS L 8 359.119 358.057 377.781 1.00 39.46 ATOM 74 CD LYS L 8 360.602 357.645 377.974 1.00 39.46 ATOM 75 CE LYS L 8 360.810 356.559 379.008 1.00 39.46 ATOM 76 NZ LYS L 8 360.605 357.089 380.379 1.00 39.46 ATOM 77 N ARG L 9 357.102 358.439 374.025 1.00 43.93 ATOM 78 CA ARG L 9 357.142 359.326 372.862 1.00 43.93 ATOM 79 C ARG L 9 355.943 360.258 372.885 1.00 43.93 ATOM 80 O ARG L 9 356.069 361.463 372.627 1.00 43.93 ATOM 81 CB ARG L 9 357.183 358.495 371.574 1.00 43.93 ATOM 82 CG ARG L 9 357.537 359.241 370.300 1.00 43.93 ATOM 83 CD ARG L 9 357.467 358.306 369.095 1.00 43.93 ATOM 84 NE ARG L 9 358.757 357.673 368.838 1.00 43.93 ATOM 85 CZ ARG L 9 359.066 357.007 367.730 1.00 43.93 ATOM 86 NH1 ARG L 9 360.272 356.472 367.590 1.00 43.93 ATOM 87 NH2 ARG L 9 358.164 356.847 366.775 1.00 43.93 ATOM 88 N THR L 10 354.775 359.702 373.215 1.00 40.21 ATOM 89 CA THR L 10 353.552 360.479 373.309 1.00 40.21 ATOM 90 C THR L 10 353.648 361.534 374.404 1.00 40.21 ATOM 91 O THR L 10 353.235 362.677 374.198 1.00 40.21 ATOM 92 CB THR L 10 352.390 359.532 373.575 1.00 40.21 ATOM 93 OG1 THR L 10 352.369 358.502 372.578 1.00 40.21 ATOM 94 CG2 THR L 10 351.126 360.270 373.523 1.00 40.21 ATOM 95 N ARG L 11 354.186 361.166 375.575 1.00 38.81 ATOM 96 CA ARG L 11 354.320 362.118 376.680 1.00 38.81 ATOM 97 C ARG L 11 355.281 363.247 376.340 1.00 38.81 ATOM 98 O ARG L 11 355.029 364.402 376.703 1.00 38.81 ATOM 99 CB ARG L 11 354.730 361.417 377.971 1.00 38.81 ATOM 100 CG ARG L 11 353.600 360.634 378.595 1.00 38.81 ATOM 101 CD ARG L 11 353.967 360.176 379.982 1.00 38.81 ATOM 102 NE ARG L 11 352.939 359.315 380.546 1.00 38.81 ATOM 103 CZ ARG L 11 352.813 359.063 381.843 1.00 38.81 ATOM 104 NH1 ARG L 11 351.849 358.262 382.271 1.00 38.81 ATOM 105 NH2 ARG L 11 353.644 359.618 382.715 1.00 38.81 ATOM 106 N ARG L 12 356.424 362.922 375.723 1.00 42.75 ATOM 107 CA ARG L 12 357.387 363.956 375.349 1.00 42.75 ATOM 108 C ARG L 12 356.771 364.899 374.325 1.00 42.75 ATOM 109 O ARG L 12 356.925 366.124 374.420 1.00 42.75 ATOM 110 CB ARG L 12 358.686 363.340 374.834 1.00 42.75 ATOM 111 CG ARG L 12 359.469 362.604 375.903 1.00 42.75 ATOM 112 CD ARG L 12 360.885 362.291 375.443 1.00 42.75 ATOM 113 NE ARG L 12 361.474 361.191 376.200 1.00 42.75 ATOM 114 CZ ARG L 12 362.740 360.805 376.092 1.00 42.75 ATOM 115 NH1 ARG L 12 363.557 361.439 375.265 1.00 42.75 ATOM 116 NH2 ARG L 12 363.194 359.795 376.820 1.00 42.75 ATOM 117 N LEU L 13 356.117 364.326 373.305 1.00 42.65 ATOM 118 CA LEU L 13 355.317 365.092 372.354 1.00 42.65 ATOM 119 C LEU L 13 354.315 366.003 373.059 1.00 42.65 ATOM 120 O LEU L 13 354.184 367.181 372.713 1.00 42.65 ATOM 121 CB LEU L 13 354.581 364.110 371.447 1.00 42.65 ATOM 122 CG LEU L 13 353.622 364.708 370.441 1.00 42.65 ATOM 123 CD1 LEU L 13 354.494 365.247 369.377 1.00 42.65 ATOM 124 CD2 LEU L 13 352.681 363.660 369.885 1.00 42.65 ATOM 125 N LYS L 14 353.644 365.475 374.086 1.00 41.53 ATOM 126 CA LYS L 14 352.558 366.173 374.766 1.00 41.53 ATOM 127 C LYS L 14 353.078 367.359 375.565 1.00 41.53 ATOM 128 O LYS L 14 352.519 368.460 375.502 1.00 41.53 ATOM 129 CB LYS L 14 351.835 365.180 375.678 1.00 41.53 ATOM 130 CG LYS L 14 350.769 365.738 376.606 1.00 41.53 ATOM 131 CD LYS L 14 349.544 366.245 375.892 1.00 41.53 ATOM 132 CE LYS L 14 348.435 366.543 376.893 1.00 41.53 ATOM 133 NZ LYS L 14 348.690 367.782 377.682 1.00 41.53 ATOM 134 N ARG L 15 354.127 367.135 376.359 1.00 42.49 ATOM 135 CA ARG L 15 354.742 368.223 377.110 1.00 42.49 ATOM 136 C ARG L 15 355.395 369.252 376.181 1.00 42.49 ATOM 137 O ARG L 15 355.467 370.436 376.531 1.00 42.49 ATOM 138 CB ARG L 15 355.701 367.607 378.141 1.00 42.49 ATOM 139 CG ARG L 15 356.917 366.927 377.561 1.00 42.49 ATOM 140 CD ARG L 15 358.009 366.599 378.571 1.00 42.49 ATOM 141 NE ARG L 15 358.691 367.713 379.208 1.00 42.49 ATOM 142 CZ ARG L 15 358.985 367.728 380.504 1.00 42.49 ATOM 143 NH1 ARG L 15 358.680 366.681 381.260 1.00 42.49 ATOM 144 NH2 ARG L 15 359.610 368.766 381.039 1.00 42.49 ATOM 145 N LYS L 16 355.873 368.839 374.993 1.00 40.54 ATOM 146 CA LYS L 16 356.331 369.840 374.026 1.00 40.54 ATOM 147 C LYS L 16 355.183 370.686 373.481 1.00 40.54 ATOM 148 O LYS L 16 355.361 371.893 373.269 1.00 40.54 ATOM 149 CB LYS L 16 357.139 369.203 372.899 1.00 40.54 ATOM 150 CG LYS L 16 358.520 368.761 373.357 1.00 40.54 ATOM 151 CD LYS L 16 359.386 368.292 372.209 1.00 40.54 ATOM 152 CE LYS L 16 360.635 367.610 372.736 1.00 40.54 ATOM 153 NZ LYS L 16 361.516 368.579 373.450 1.00 40.54 ATOM 154 N ARG L 17 354.025 370.061 373.188 1.00 41.79 ATOM 155 CA ARG L 17 352.815 370.831 372.870 1.00 41.79 ATOM 156 C ARG L 17 352.487 371.822 373.974 1.00 41.79 ATOM 157 O ARG L 17 352.099 372.961 373.696 1.00 41.79 ATOM 158 CB ARG L 17 351.598 369.948 372.565 1.00 41.79 ATOM 159 CG ARG L 17 351.743 368.881 371.497 1.00 41.79 ATOM 160 CD ARG L 17 350.322 368.501 371.063 1.00 41.79 ATOM 161 NE ARG L 17 350.169 367.246 370.326 1.00 41.79 ATOM 162 CZ ARG L 17 350.543 367.070 369.059 1.00 41.79 ATOM 163 NH1 ARG L 17 351.088 368.063 368.368 1.00 41.79 ATOM 164 NH2 ARG L 17 350.354 365.901 368.467 1.00 41.79 ATOM 165 N ARG L 18 352.556 371.355 375.227 1.00 42.51 ATOM 166 CA ARG L 18 352.334 372.192 376.404 1.00 42.51 ATOM 167 C ARG L 18 353.224 373.430 376.352 1.00 42.51 ATOM 168 O ARG L 18 352.746 374.562 376.508 1.00 42.51 ATOM 169 CB ARG L 18 352.596 371.389 377.679 1.00 42.51 ATOM 170 CG ARG L 18 351.739 371.769 378.870 1.00 42.51 ATOM 171 CD ARG L 18 351.921 370.786 380.022 1.00 42.51 ATOM 172 NE ARG L 18 351.288 369.494 379.773 1.00 42.51 ATOM 173 CZ ARG L 18 351.518 368.399 380.491 1.00 42.51 ATOM 174 NH1 ARG L 18 350.900 367.265 380.191 1.00 42.51 ATOM 175 NH2 ARG L 18 352.367 368.436 381.509 1.00 42.51 ATOM 176 N LYS L 19 354.530 373.219 376.152 1.00 40.47 ATOM 177 CA LYS L 19 355.486 374.323 376.172 1.00 40.47 ATOM 178 C LYS L 19 355.247 375.307 375.023 1.00 40.47 ATOM 179 O LYS L 19 355.263 376.529 375.235 1.00 40.47 ATOM 180 CB LYS L 19 356.910 373.772 376.109 1.00 40.47 ATOM 181 CG LYS L 19 357.368 373.096 377.394 1.00 40.47 ATOM 182 CD LYS L 19 357.336 374.033 378.587 1.00 40.47 ATOM 183 CE LYS L 19 358.359 375.146 378.470 1.00 40.47 ATOM 184 NZ LYS L 19 359.752 374.628 378.490 1.00 40.47 ATOM 185 N VAL L 20 355.045 374.799 373.792 1.00 42.45 ATOM 186 CA VAL L 20 354.840 375.701 372.650 1.00 42.45 ATOM 187 C VAL L 20 353.528 376.472 372.811 1.00 42.45 ATOM 188 O VAL L 20 353.435 377.650 372.444 1.00 42.45 ATOM 189 CB VAL L 20 354.942 374.971 371.288 1.00 42.45 ATOM 190 CG1 VAL L 20 353.929 373.871 371.112 1.00 42.45 ATOM 191 CG2 VAL L 20 354.900 375.960 370.111 1.00 42.45 ATOM 192 N ARG L 21 352.488 375.823 373.354 1.00 45.71 ATOM 193 CA ARG L 21 351.211 376.508 373.502 1.00 45.71 ATOM 194 C ARG L 21 351.261 377.529 374.628 1.00 45.71 ATOM 195 O ARG L 21 350.573 378.554 374.561 1.00 45.71 ATOM 196 CB ARG L 21 350.101 375.495 373.775 1.00 45.71 ATOM 197 CG ARG L 21 348.710 376.063 373.631 1.00 45.71 ATOM 198 CD ARG L 21 347.630 375.025 373.836 1.00 45.71 ATOM 199 NE ARG L 21 346.314 375.648 373.752 1.00 45.71 ATOM 200 CZ ARG L 21 345.177 375.061 374.103 1.00 45.71 ATOM 201 NH1 ARG L 21 344.035 375.721 373.982 1.00 45.71 ATOM 202 NH2 ARG L 21 345.181 373.825 374.585 1.00 45.71 ATOM 203 N ALA L 22 352.085 377.283 375.651 1.00 44.19 ATOM 204 CA ALA L 22 352.344 378.315 376.648 1.00 44.19 ATOM 205 C ALA L 22 353.060 379.502 376.022 1.00 44.19 ATOM 206 O ALA L 22 352.777 380.656 376.361 1.00 44.19 ATOM 207 CB ALA L 22 353.155 377.738 377.806 1.00 44.19 ATOM 208 N ARG L 23 354.026 379.222 375.141 1.00 45.24 ATOM 209 CA ARG L 23 354.761 380.276 374.443 1.00 45.24 ATOM 210 C ARG L 23 353.839 381.131 373.584 1.00 45.24 ATOM 211 O ARG L 23 353.899 382.365 373.613 1.00 45.24 ATOM 212 CB ARG L 23 355.825 379.628 373.562 1.00 45.24 ATOM 213 CG ARG L 23 357.060 379.172 374.283 1.00 45.24 ATOM 214 CD ARG L 23 358.262 379.020 373.355 1.00 45.24 ATOM 215 NE ARG L 23 358.450 380.089 372.374 1.00 45.24 ATOM 216 CZ ARG L 23 358.197 379.965 371.073 1.00 45.24 ATOM 217 NH1 ARG L 23 358.377 380.995 370.260 1.00 45.24 ATOM 218 NH2 ARG L 23 357.774 378.807 370.586 1.00 45.24 ATOM 219 N SER L 24 352.976 380.477 372.809 1.00 50.73 ATOM 220 CA SER L 24 351.986 381.132 371.965 1.00 50.73 ATOM 221 C SER L 24 350.795 381.705 372.726 1.00 50.73 ATOM 222 O SER L 24 349.999 382.433 372.124 1.00 50.73 ATOM 223 CB SER L 24 351.507 380.143 370.907 1.00 50.73 ATOM 224 OG SER L 24 350.689 379.143 371.483 1.00 50.73 ATOM 225 N LYS L 25 350.642 381.398 374.009 1.00 54.56 ATOM 226 CA LYS L 25 349.477 381.864 374.755 1.00 54.56 ATOM 227 C LYS L 25 349.824 382.166 376.209 1.00 54.56 ATOM 228 O LYS L 25 349.171 381.670 377.128 1.00 54.56 ATOM 229 CB LYS L 25 348.352 380.828 374.688 1.00 54.56 TER