HEADER RIBOSOME 31-DEC-69 7NRD TITLE Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome TITLE 2 with MBF1, A/P-tRNA and P/E-tRNA COMPND MOL_ID: 80; COMPND 2 MOLECULE: 60S ribosomal protein L41-B; COMPND 3 CHAIN: Lp; EXPDTA ELECTRON MICROSCOPY DBREF 7NRD L 1 25 UNP P0CX87 RL41B_YEAST 1 25 SEQRES 1 Lp 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 Lp 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET L 1 404.856 246.767 472.546 1.00 65.80 ATOM 2 CA MET L 1 405.010 245.612 473.421 1.00 65.80 ATOM 3 C MET L 1 403.829 245.484 474.433 1.00 65.80 ATOM 4 O MET L 1 403.109 246.467 474.650 1.00 65.80 ATOM 5 CB MET L 1 406.381 245.676 474.110 1.00 65.80 ATOM 6 CG MET L 1 406.702 246.771 475.092 1.00 65.80 ATOM 7 SD MET L 1 408.292 246.301 475.811 1.00 65.80 ATOM 8 CE MET L 1 407.823 244.835 476.741 1.00 65.80 ATOM 9 N ARG L 2 403.682 244.302 475.065 1.00 62.75 ATOM 10 CA ARG L 2 402.369 243.754 475.438 1.00 62.75 ATOM 11 C ARG L 2 402.101 243.816 476.955 1.00 62.75 ATOM 12 O ARG L 2 402.986 243.524 477.772 1.00 62.75 ATOM 13 CB ARG L 2 402.254 242.291 474.911 1.00 62.75 ATOM 14 CG ARG L 2 400.960 241.574 475.249 1.00 62.75 ATOM 15 CD ARG L 2 400.885 240.108 474.996 1.00 62.75 ATOM 16 NE ARG L 2 399.932 239.539 475.968 1.00 62.75 ATOM 17 CZ ARG L 2 398.613 239.393 475.817 1.00 62.75 ATOM 18 NH1 ARG L 2 398.018 239.726 474.681 1.00 62.75 ATOM 19 NH2 ARG L 2 397.885 238.870 476.804 1.00 62.75 ATOM 20 N ALA L 3 400.806 244.054 477.308 1.00 67.87 ATOM 21 CA ALA L 3 400.385 244.680 478.570 1.00 67.87 ATOM 22 C ALA L 3 399.988 243.693 479.692 1.00 67.87 ATOM 23 O ALA L 3 400.240 243.999 480.868 1.00 67.87 ATOM 24 CB ALA L 3 399.236 245.648 478.300 1.00 67.87 ATOM 25 N LYS L 4 399.369 242.516 479.409 1.00 48.37 ATOM 26 CA LYS L 4 399.109 241.604 480.545 1.00 48.37 ATOM 27 C LYS L 4 400.416 240.947 481.042 1.00 48.37 ATOM 28 O LYS L 4 400.561 240.612 482.228 1.00 48.37 ATOM 29 CB LYS L 4 398.012 240.555 480.248 1.00 48.37 ATOM 30 CG LYS L 4 397.766 239.657 481.522 1.00 48.37 ATOM 31 CD LYS L 4 396.839 238.482 481.565 1.00 48.37 ATOM 32 CE LYS L 4 395.594 238.634 482.362 1.00 48.37 ATOM 33 NZ LYS L 4 394.931 237.302 482.446 1.00 48.37 ATOM 34 N TRP L 5 401.436 240.857 480.192 1.00 53.42 ATOM 35 CA TRP L 5 402.659 240.372 480.798 1.00 53.42 ATOM 36 C TRP L 5 403.618 241.497 481.112 1.00 53.42 ATOM 37 O TRP L 5 404.529 241.270 481.922 1.00 53.42 ATOM 38 CB TRP L 5 403.263 239.262 479.976 1.00 53.42 ATOM 39 CG TRP L 5 402.156 238.356 479.631 1.00 53.42 ATOM 40 CD1 TRP L 5 401.658 238.225 478.406 1.00 53.42 ATOM 41 CD2 TRP L 5 401.259 237.608 480.508 1.00 53.42 ATOM 42 NE1 TRP L 5 400.573 237.386 478.411 1.00 53.42 ATOM 43 CE2 TRP L 5 400.303 236.996 479.689 1.00 53.42 ATOM 44 CE3 TRP L 5 401.205 237.367 481.873 1.00 53.42 ATOM 45 CZ2 TRP L 5 399.305 236.158 480.175 1.00 53.42 ATOM 46 CZ3 TRP L 5 400.211 236.539 482.351 1.00 53.42 ATOM 47 CH2 TRP L 5 399.277 235.934 481.495 1.00 53.42 ATOM 48 N ARG L 6 403.328 242.737 480.656 1.00 51.40 ATOM 49 CA ARG L 6 403.668 243.865 481.522 1.00 51.40 ATOM 50 C ARG L 6 403.108 243.622 482.919 1.00 51.40 ATOM 51 O ARG L 6 403.809 243.854 483.894 1.00 51.40 ATOM 52 CB ARG L 6 403.162 245.243 481.052 1.00 51.40 ATOM 53 CG ARG L 6 403.568 245.917 479.735 1.00 51.40 ATOM 54 CD ARG L 6 405.021 246.267 479.429 1.00 51.40 ATOM 55 NE ARG L 6 405.661 247.233 480.311 1.00 51.40 ATOM 56 CZ ARG L 6 406.952 247.529 480.240 1.00 51.40 ATOM 57 NH1 ARG L 6 407.689 247.009 479.274 1.00 51.40 ATOM 58 NH2 ARG L 6 407.502 248.384 481.092 1.00 51.40 ATOM 59 N LYS L 7 401.893 243.058 483.043 1.00 38.10 ATOM 60 CA LYS L 7 401.260 243.013 484.361 1.00 38.10 ATOM 61 C LYS L 7 401.813 241.918 485.267 1.00 38.10 ATOM 62 O LYS L 7 402.170 242.189 486.418 1.00 38.10 ATOM 63 CB LYS L 7 399.753 242.884 484.259 1.00 38.10 ATOM 64 CG LYS L 7 399.101 243.012 485.615 1.00 38.10 ATOM 65 CD LYS L 7 397.638 243.047 485.478 1.00 38.10 ATOM 66 CE LYS L 7 397.001 243.159 486.803 1.00 38.10 ATOM 67 NZ LYS L 7 395.539 243.339 486.658 1.00 38.10 ATOM 68 N LYS L 8 401.830 240.677 484.821 1.00 33.67 ATOM 69 CA LYS L 8 402.361 239.664 485.732 1.00 33.67 ATOM 70 C LYS L 8 403.877 239.803 485.888 1.00 33.67 ATOM 71 O LYS L 8 404.400 239.676 487.009 1.00 33.67 ATOM 72 CB LYS L 8 401.979 238.250 485.308 1.00 33.67 ATOM 73 CG LYS L 8 402.458 237.257 486.312 1.00 33.67 ATOM 74 CD LYS L 8 402.243 235.835 485.957 1.00 33.67 ATOM 75 CE LYS L 8 401.012 235.347 486.583 1.00 33.67 ATOM 76 NZ LYS L 8 401.251 235.366 488.048 1.00 33.67 ATOM 77 N ARG L 9 404.602 240.184 484.824 1.00 40.03 ATOM 78 CA ARG L 9 406.003 240.480 485.035 1.00 40.03 ATOM 79 C ARG L 9 406.187 241.776 485.818 1.00 40.03 ATOM 80 O ARG L 9 407.207 241.962 486.467 1.00 40.03 ATOM 81 CB ARG L 9 406.720 240.500 483.694 1.00 40.03 ATOM 82 CG ARG L 9 406.637 239.139 483.088 1.00 40.03 ATOM 83 CD ARG L 9 407.594 238.854 481.962 1.00 40.03 ATOM 84 NE ARG L 9 407.479 239.739 480.826 1.00 40.03 ATOM 85 CZ ARG L 9 407.994 239.462 479.637 1.00 40.03 ATOM 86 NH1 ARG L 9 407.874 240.318 478.645 1.00 40.03 ATOM 87 NH2 ARG L 9 408.571 238.294 479.417 1.00 40.03 ATOM 88 N THR L 10 405.161 242.620 485.877 1.00 30.63 ATOM 89 CA THR L 10 405.213 243.826 486.685 1.00 30.63 ATOM 90 C THR L 10 405.057 243.505 488.153 1.00 30.63 ATOM 91 O THR L 10 405.745 244.082 488.999 1.00 30.63 ATOM 92 CB THR L 10 404.132 244.801 486.203 1.00 30.63 ATOM 93 OG1 THR L 10 404.592 245.563 485.085 1.00 30.63 ATOM 94 CG2 THR L 10 403.632 245.702 487.240 1.00 30.63 ATOM 95 N ARG L 11 404.197 242.557 488.482 1.00 25.43 ATOM 96 CA ARG L 11 404.087 242.188 489.886 1.00 25.43 ATOM 97 C ARG L 11 405.320 241.421 490.355 1.00 25.43 ATOM 98 O ARG L 11 405.767 241.596 491.490 1.00 25.43 ATOM 99 CB ARG L 11 402.815 241.398 490.136 1.00 25.43 ATOM 100 CG ARG L 11 401.535 242.163 489.771 1.00 25.43 ATOM 101 CD ARG L 11 400.355 241.570 490.533 1.00 25.43 ATOM 102 NE ARG L 11 398.998 241.929 490.140 1.00 25.43 ATOM 103 CZ ARG L 11 398.377 243.040 490.480 1.00 25.43 ATOM 104 NH1 ARG L 11 397.135 243.231 490.114 1.00 25.43 ATOM 105 NH2 ARG L 11 399.001 243.982 491.133 1.00 25.43 ATOM 106 N ARG L 12 405.938 240.628 489.471 1.00 35.67 ATOM 107 CA ARG L 12 407.213 239.990 489.822 1.00 35.67 ATOM 108 C ARG L 12 408.364 240.987 489.811 1.00 35.67 ATOM 109 O ARG L 12 409.367 240.805 490.513 1.00 35.67 ATOM 110 CB ARG L 12 407.510 238.848 488.872 1.00 35.67 ATOM 111 CG ARG L 12 406.550 237.792 489.058 1.00 35.67 ATOM 112 CD ARG L 12 406.700 236.766 488.044 1.00 35.67 ATOM 113 NE ARG L 12 405.649 235.800 488.246 1.00 35.67 ATOM 114 CZ ARG L 12 405.414 234.800 487.435 1.00 35.67 ATOM 115 NH1 ARG L 12 406.169 234.629 486.369 1.00 35.67 ATOM 116 NH2 ARG L 12 404.434 233.964 487.695 1.00 35.67 ATOM 117 N LEU L 13 408.240 242.035 488.996 1.00 32.58 ATOM 118 CA LEU L 13 409.155 243.160 489.028 1.00 32.58 ATOM 119 C LEU L 13 409.101 243.803 490.391 1.00 32.58 ATOM 120 O LEU L 13 410.135 244.039 491.024 1.00 32.58 ATOM 121 CB LEU L 13 408.748 244.162 487.946 1.00 32.58 ATOM 122 CG LEU L 13 409.603 245.291 487.394 1.00 32.58 ATOM 123 CD1 LEU L 13 410.632 244.651 486.508 1.00 32.58 ATOM 124 CD2 LEU L 13 408.783 246.293 486.627 1.00 32.58 ATOM 125 N LYS L 14 407.894 243.994 490.900 1.00 28.44 ATOM 126 CA LYS L 14 407.751 244.639 492.185 1.00 28.44 ATOM 127 C LYS L 14 408.145 243.694 493.310 1.00 28.44 ATOM 128 O LYS L 14 408.703 244.135 494.311 1.00 28.44 ATOM 129 CB LYS L 14 406.335 245.174 492.336 1.00 28.44 ATOM 130 CG LYS L 14 406.043 245.846 493.659 1.00 28.44 ATOM 131 CD LYS L 14 406.867 247.092 493.904 1.00 28.44 ATOM 132 CE LYS L 14 406.462 247.746 495.223 1.00 28.44 ATOM 133 NZ LYS L 14 407.360 248.858 495.614 1.00 28.44 ATOM 134 N ARG L 15 407.947 242.383 493.135 1.00 23.69 ATOM 135 CA ARG L 15 408.377 241.435 494.170 1.00 23.69 ATOM 136 C ARG L 15 409.894 241.382 494.327 1.00 23.69 ATOM 137 O ARG L 15 410.390 241.565 495.447 1.00 23.69 ATOM 138 CB ARG L 15 407.817 240.042 493.899 1.00 23.69 ATOM 139 CG ARG L 15 406.401 239.829 494.386 1.00 23.69 ATOM 140 CD ARG L 15 405.833 238.479 494.004 1.00 23.69 ATOM 141 NE ARG L 15 406.633 237.389 494.538 1.00 23.69 ATOM 142 CZ ARG L 15 406.518 236.115 494.177 1.00 23.69 ATOM 143 NH1 ARG L 15 405.625 235.766 493.261 1.00 23.69 ATOM 144 NH2 ARG L 15 407.307 235.189 494.717 1.00 23.69 ATOM 145 N LYS L 16 410.644 241.156 493.233 1.00 26.00 ATOM 146 CA LYS L 16 412.108 241.181 493.312 1.00 26.00 ATOM 147 C LYS L 16 412.628 242.542 493.743 1.00 26.00 ATOM 148 O LYS L 16 413.578 242.640 494.532 1.00 26.00 ATOM 149 CB LYS L 16 412.754 240.840 491.973 1.00 26.00 ATOM 150 CG LYS L 16 412.693 239.413 491.465 1.00 26.00 ATOM 151 CD LYS L 16 413.614 239.348 490.228 1.00 26.00 ATOM 152 CE LYS L 16 413.592 238.022 489.478 1.00 26.00 ATOM 153 NZ LYS L 16 414.264 236.896 490.168 1.00 26.00 ATOM 154 N ARG L 17 411.993 243.601 493.272 1.00 29.04 ATOM 155 CA ARG L 17 412.492 244.935 493.523 1.00 29.04 ATOM 156 C ARG L 17 412.251 245.360 494.969 1.00 29.04 ATOM 157 O ARG L 17 413.126 245.952 495.614 1.00 29.04 ATOM 158 CB ARG L 17 411.802 245.840 492.516 1.00 29.04 ATOM 159 CG ARG L 17 412.185 247.255 492.467 1.00 29.04 ATOM 160 CD ARG L 17 411.406 247.856 491.343 1.00 29.04 ATOM 161 NE ARG L 17 411.790 247.236 490.105 1.00 29.04 ATOM 162 CZ ARG L 17 412.826 247.639 489.407 1.00 29.04 ATOM 163 NH1 ARG L 17 413.548 248.658 489.825 1.00 29.04 ATOM 164 NH2 ARG L 17 413.129 247.042 488.277 1.00 29.04 ATOM 165 N ARG L 18 411.094 245.002 495.519 1.00 27.29 ATOM 166 CA ARG L 18 410.795 245.300 496.907 1.00 27.29 ATOM 167 C ARG L 18 411.653 244.481 497.854 1.00 27.29 ATOM 168 O ARG L 18 412.096 245.000 498.881 1.00 27.29 ATOM 169 CB ARG L 18 409.325 245.040 497.174 1.00 27.29 ATOM 170 CG ARG L 18 408.858 245.344 498.568 1.00 27.29 ATOM 171 CD ARG L 18 407.408 244.914 498.709 1.00 27.29 ATOM 172 NE ARG L 18 406.410 245.829 498.168 1.00 27.29 ATOM 173 CZ ARG L 18 405.190 245.442 497.813 1.00 27.29 ATOM 174 NH1 ARG L 18 404.300 246.319 497.375 1.00 27.29 ATOM 175 NH2 ARG L 18 404.872 244.157 497.862 1.00 27.29 ATOM 176 N LYS L 19 411.903 243.197 497.535 1.00 29.35 ATOM 177 CA LYS L 19 412.783 242.387 498.386 1.00 29.35 ATOM 178 C LYS L 19 414.192 242.948 498.434 1.00 29.35 ATOM 179 O LYS L 19 414.808 242.993 499.500 1.00 29.35 ATOM 180 CB LYS L 19 412.844 240.932 497.927 1.00 29.35 ATOM 181 CG LYS L 19 411.598 240.148 498.178 1.00 29.35 ATOM 182 CD LYS L 19 411.201 240.043 499.687 1.00 29.35 ATOM 183 CE LYS L 19 411.983 239.009 500.521 1.00 29.35 ATOM 184 NZ LYS L 19 411.365 238.698 501.846 1.00 29.35 ATOM 185 N VAL L 20 414.732 243.384 497.296 1.00 26.91 ATOM 186 CA VAL L 20 416.116 243.837 497.339 1.00 26.91 ATOM 187 C VAL L 20 416.216 245.196 498.026 1.00 26.91 ATOM 188 O VAL L 20 417.185 245.471 498.754 1.00 26.91 ATOM 189 CB VAL L 20 416.737 243.817 495.934 1.00 26.91 ATOM 190 CG1 VAL L 20 416.123 244.809 495.029 1.00 26.91 ATOM 191 CG2 VAL L 20 418.191 244.045 496.026 1.00 26.91 ATOM 192 N ARG L 21 415.173 246.022 497.918 1.00 33.23 ATOM 193 CA ARG L 21 415.213 247.260 498.682 1.00 33.23 ATOM 194 C ARG L 21 415.025 246.993 500.166 1.00 33.23 ATOM 195 O ARG L 21 415.604 247.697 500.998 1.00 33.23 ATOM 196 CB ARG L 21 414.153 248.216 498.190 1.00 33.23 ATOM 197 CG ARG L 21 414.293 249.593 498.704 1.00 33.23 ATOM 198 CD ARG L 21 413.172 250.394 498.187 1.00 33.23 ATOM 199 NE ARG L 21 413.336 251.795 498.476 1.00 33.23 ATOM 200 CZ ARG L 21 412.483 252.716 498.065 1.00 33.23 ATOM 201 NH1 ARG L 21 412.684 253.997 498.341 1.00 33.23 ATOM 202 NH2 ARG L 21 411.415 252.338 497.392 1.00 33.23 ATOM 203 N ALA L 22 414.269 245.953 500.524 1.00 39.15 ATOM 204 CA ALA L 22 414.131 245.596 501.932 1.00 39.15 ATOM 205 C ALA L 22 415.410 244.973 502.485 1.00 39.15 ATOM 206 O ALA L 22 415.636 244.979 503.699 1.00 39.15 ATOM 207 CB ALA L 22 412.956 244.647 502.111 1.00 39.15 ATOM 208 N ARG L 23 416.237 244.392 501.611 1.00 34.08 ATOM 209 CA ARG L 23 417.585 243.983 502.011 1.00 34.08 ATOM 210 C ARG L 23 418.426 245.181 502.381 1.00 34.08 ATOM 211 O ARG L 23 419.036 245.229 503.455 1.00 34.08 ATOM 212 CB ARG L 23 418.294 243.237 500.887 1.00 34.08 ATOM 213 CG ARG L 23 417.830 241.867 500.633 1.00 34.08 ATOM 214 CD ARG L 23 418.665 241.314 499.531 1.00 34.08 ATOM 215 NE ARG L 23 420.068 241.114 499.899 1.00 34.08 ATOM 216 CZ ARG L 23 421.092 241.795 499.392 1.00 34.08 ATOM 217 NH1 ARG L 23 422.330 241.523 499.783 1.00 34.08 ATOM 218 NH2 ARG L 23 420.875 242.748 498.494 1.00 34.08 ATOM 219 N SER L 24 418.497 246.146 501.474 1.00 40.41 ATOM 220 CA SER L 24 419.397 247.268 501.682 1.00 40.41 ATOM 221 C SER L 24 418.866 248.288 502.676 1.00 40.41 ATOM 222 O SER L 24 419.621 249.156 503.111 1.00 40.41 ATOM 223 CB SER L 24 419.681 247.926 500.337 1.00 40.41 ATOM 224 OG SER L 24 418.484 248.387 499.748 1.00 40.41 ATOM 225 N LYS L 25 417.602 248.216 503.036 1.00 51.42 ATOM 226 CA LYS L 25 417.056 249.204 503.935 1.00 51.42 ATOM 227 C LYS L 25 416.460 248.538 505.191 1.00 51.42 ATOM 228 O LYS L 25 417.108 248.432 506.244 1.00 51.42 ATOM 229 CB LYS L 25 416.006 250.048 503.194 1.00 51.42 TER