HEADER LIGASE 31-DEC-69 7NTY TITLE Crystal Structure of Neisseria gonorrhoeae LeuRS L550A mutant COMPND MOL_ID: 1; COMPND 2 MOLECULE: Leucine--tRNA ligase; COMPND 3 CHAIN: A; COMPND 4 MUTATION: YES; COMPND 5 EC: 6.1.1.4; COMPND 6 FRAGMENT: Leucyl-tRNA ; COMPND 7 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.39 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 610 REMARK 465 ASP A 611 REMARK 465 ASP A 612 REMARK 465 LYS A 613 REMARK 465 GLY A 614 REMARK 465 ARG A 615 REMARK 465 PRO A 616 REMARK 465 VAL A 617 REMARK 465 SER A 618 REMARK 465 ALA A 619 REMARK 465 VAL A 620 REMARK 465 LEU A 621 REMARK 465 LYS A 622 REMARK 465 ALA A 623 REMARK 465 ASP A 624 DBREF 7NTY A 1 876 UNP B4RNT1 SYL_NEIG2 1 876 SEQRES 1 A 50 VAL CYS GLU THR TYR TYR ARG GLU ASN ASP LYS GLY GLY SEQRES 2 A 50 LYS ASP TRP ILE ASN PRO ALA ASP VAL GLU LEU THR PHE SEQRES 3 A 50 ASP ASP LYS GLY ARG PRO VAL SER ALA VAL LEU LYS ALA SEQRES 4 A 50 ASP GLY LEU PRO VAL VAL ILE SER GLY THR GLU ATOM 1 N VAL A 584 -17.499 -8.018 -24.379 1.00 54.35 ATOM 2 CA VAL A 584 -18.032 -8.054 -23.026 1.00 54.35 ATOM 3 C VAL A 584 -18.440 -9.482 -22.685 1.00 54.01 ATOM 4 O VAL A 584 -18.614 -10.339 -23.556 1.00 58.47 ATOM 5 CB VAL A 584 -19.217 -7.080 -22.846 1.00 53.72 ATOM 6 CG1 VAL A 584 -18.798 -5.659 -23.213 1.00 42.18 ATOM 7 CG2 VAL A 584 -20.408 -7.525 -23.679 1.00 48.90 ATOM 8 N CYS A 585 -18.591 -9.733 -21.387 1.00 49.10 ATOM 9 CA CYS A 585 -18.951 -11.056 -20.903 1.00 51.85 ATOM 10 C CYS A 585 -19.564 -10.925 -19.517 1.00 59.77 ATOM 11 O CYS A 585 -19.343 -9.940 -18.808 1.00 62.76 ATOM 12 CB CYS A 585 -17.737 -11.993 -20.871 1.00 58.34 ATOM 13 SG CYS A 585 -18.123 -13.679 -20.351 1.00 60.31 ATOM 14 N GLU A 586 -20.334 -11.941 -19.140 1.00 61.27 ATOM 15 CA GLU A 586 -20.986 -11.955 -17.841 1.00 63.26 ATOM 16 C GLU A 586 -19.956 -12.171 -16.733 1.00 66.13 ATOM 17 O GLU A 586 -18.845 -12.656 -16.966 1.00 64.25 ATOM 18 CB GLU A 586 -22.057 -13.045 -17.802 1.00 70.00 ATOM 19 CG GLU A 586 -23.168 -12.811 -16.799 1.00 76.73 ATOM 20 CD GLU A 586 -24.235 -13.886 -16.861 1.00 85.45 ATOM 21 OE1 GLU A 586 -23.938 -14.991 -17.363 1.00 80.74 ATOM 22 OE2 GLU A 586 -25.373 -13.624 -16.415 1.00 90.19 ATOM 23 N THR A 587 -20.337 -11.794 -15.514 1.00 69.79 ATOM 24 CA THR A 587 -19.487 -11.936 -14.341 1.00 70.80 ATOM 25 C THR A 587 -20.201 -12.768 -13.285 1.00 68.63 ATOM 26 O THR A 587 -21.431 -12.747 -13.183 1.00 68.99 ATOM 27 CB THR A 587 -19.096 -10.565 -13.756 1.00 66.55 ATOM 28 OG1 THR A 587 -20.276 -9.806 -13.466 1.00 65.96 ATOM 29 CG2 THR A 587 -18.231 -9.788 -14.740 1.00 53.88 ATOM 30 N TYR A 588 -19.416 -13.501 -12.494 1.00 78.94 ATOM 31 CA TYR A 588 -19.939 -14.413 -11.482 1.00 82.20 ATOM 32 C TYR A 588 -19.173 -14.218 -10.182 1.00 88.74 ATOM 33 O TYR A 588 -17.941 -14.286 -10.177 1.00 89.58 ATOM 34 CB TYR A 588 -19.818 -15.870 -11.938 1.00 79.08 ATOM 35 CG TYR A 588 -20.295 -16.131 -13.351 1.00 73.22 ATOM 36 CD1 TYR A 588 -19.438 -15.979 -14.436 1.00 61.90 ATOM 37 CD2 TYR A 588 -21.597 -16.545 -13.598 1.00 71.82 ATOM 38 CE1 TYR A 588 -19.868 -16.223 -15.726 1.00 58.28 ATOM 39 CE2 TYR A 588 -22.035 -16.790 -14.885 1.00 68.20 ATOM 40 CZ TYR A 588 -21.168 -16.629 -15.944 1.00 66.18 ATOM 41 OH TYR A 588 -21.607 -16.875 -17.224 1.00 71.56 ATOM 42 N TYR A 589 -19.893 -13.998 -9.078 1.00 93.60 ATOM 43 CA TYR A 589 -19.248 -13.732 -7.799 1.00 90.84 ATOM 44 C TYR A 589 -19.872 -14.549 -6.674 1.00 90.42 ATOM 45 O TYR A 589 -21.012 -15.013 -6.760 1.00 87.17 ATOM 46 CB TYR A 589 -19.293 -12.237 -7.434 1.00 90.51 ATOM 47 CG TYR A 589 -20.636 -11.720 -6.959 1.00 90.40 ATOM 48 CD1 TYR A 589 -20.957 -11.697 -5.605 1.00 91.84 ATOM 49 CD2 TYR A 589 -21.570 -11.227 -7.861 1.00 87.92 ATOM 50 CE1 TYR A 589 -22.176 -11.215 -5.168 1.00 91.66 ATOM 51 CE2 TYR A 589 -22.791 -10.742 -7.434 1.00 87.35 ATOM 52 CZ TYR A 589 -23.089 -10.738 -6.088 1.00 89.51 ATOM 53 OH TYR A 589 -24.306 -10.255 -5.663 1.00 83.74 ATOM 54 N ARG A 590 -19.086 -14.710 -5.609 1.00 97.24 ATOM 55 CA ARG A 590 -19.497 -15.364 -4.372 1.00100.55 ATOM 56 C ARG A 590 -18.964 -14.537 -3.212 1.00108.09 ATOM 57 O ARG A 590 -17.791 -14.150 -3.219 1.00117.22 ATOM 58 CB ARG A 590 -18.965 -16.800 -4.291 1.00 88.41 ATOM 59 CG ARG A 590 -19.483 -17.602 -3.106 1.00 82.28 ATOM 60 CD ARG A 590 -20.899 -18.099 -3.345 1.00 77.34 ATOM 61 N GLU A 591 -19.818 -14.269 -2.226 1.00102.44 ATOM 62 CA GLU A 591 -19.460 -13.355 -1.150 1.00101.14 ATOM 63 C GLU A 591 -18.279 -13.890 -0.341 1.00108.87 ATOM 64 O GLU A 591 -18.025 -15.097 -0.273 1.00103.88 ATOM 65 CB GLU A 591 -20.659 -13.107 -0.236 1.00 97.80 ATOM 66 N ASN A 592 -17.554 -12.962 0.282 1.00116.39 ATOM 67 CA ASN A 592 -16.334 -13.269 1.010 1.00123.25 ATOM 68 C ASN A 592 -16.635 -13.517 2.487 1.00132.78 ATOM 69 O ASN A 592 -17.787 -13.526 2.926 1.00138.83 ATOM 70 CB ASN A 592 -15.316 -12.141 0.841 1.00120.27 ATOM 71 N ASP A 593 -15.570 -13.711 3.268 1.00134.65 ATOM 72 CA ASP A 593 -15.719 -14.052 4.677 1.00134.92 ATOM 73 C ASP A 593 -16.163 -12.866 5.525 1.00137.75 ATOM 74 O ASP A 593 -16.607 -13.067 6.660 1.00142.51 ATOM 75 CB ASP A 593 -14.402 -14.608 5.220 1.00134.01 ATOM 76 CG ASP A 593 -13.702 -15.518 4.230 1.00132.35 ATOM 77 OD1 ASP A 593 -14.398 -16.186 3.436 1.00131.02 ATOM 78 OD2 ASP A 593 -12.454 -15.560 4.242 1.00132.31 ATOM 79 N LYS A 594 -16.052 -11.635 5.006 1.00134.29 ATOM 80 CA LYS A 594 -16.420 -10.446 5.778 1.00130.42 ATOM 81 C LYS A 594 -16.824 -9.341 4.794 1.00126.45 ATOM 82 O LYS A 594 -16.064 -8.414 4.502 1.00126.21 ATOM 83 CB LYS A 594 -15.285 -9.990 6.695 1.00129.36 ATOM 84 N GLY A 595 -18.046 -9.454 4.276 1.00120.25 ATOM 85 CA GLY A 595 -18.647 -8.420 3.453 1.00110.44 ATOM 86 C GLY A 595 -17.900 -8.070 2.181 1.00107.43 ATOM 87 O GLY A 595 -17.502 -6.917 1.990 1.00105.56 ATOM 88 N GLY A 596 -17.715 -9.048 1.299 1.00109.36 ATOM 89 CA GLY A 596 -17.024 -8.808 0.047 1.00103.18 ATOM 90 C GLY A 596 -17.529 -9.666 -1.095 1.00103.69 ATOM 91 O GLY A 596 -18.606 -10.263 -1.006 1.00100.86 ATOM 92 N LYS A 597 -16.757 -9.727 -2.180 1.00108.45 ATOM 93 CA LYS A 597 -17.090 -10.532 -3.348 1.00106.52 ATOM 94 C LYS A 597 -15.814 -11.154 -3.899 1.00114.49 ATOM 95 O LYS A 597 -14.702 -10.814 -3.486 1.00117.17 ATOM 96 CB LYS A 597 -17.788 -9.697 -4.432 1.00 92.04 ATOM 97 CG LYS A 597 -19.142 -9.132 -4.026 1.00 87.81 ATOM 98 CD LYS A 597 -19.691 -8.191 -5.088 1.00 78.21 ATOM 99 CE LYS A 597 -21.075 -7.679 -4.715 1.00 76.79 ATOM 100 NZ LYS A 597 -21.081 -6.966 -3.404 1.00 77.98 ATOM 101 N ASP A 598 -15.982 -12.078 -4.842 1.00123.45 ATOM 102 CA ASP A 598 -14.848 -12.684 -5.531 1.00134.98 ATOM 103 C ASP A 598 -15.334 -13.287 -6.839 1.00133.22 ATOM 104 O ASP A 598 -16.309 -14.044 -6.847 1.00139.07 ATOM 105 CB ASP A 598 -14.170 -13.755 -4.672 1.00145.59 ATOM 106 CG ASP A 598 -13.014 -14.423 -5.390 1.00151.26 ATOM 107 OD1 ASP A 598 -12.017 -13.731 -5.688 1.00151.67 ATOM 108 OD2 ASP A 598 -13.103 -15.638 -5.663 1.00153.80 ATOM 109 N TRP A 599 -14.642 -12.975 -7.929 1.00122.06 ATOM 110 CA TRP A 599 -15.090 -13.318 -9.269 1.00107.19 ATOM 111 C TRP A 599 -14.285 -14.489 -9.825 1.00101.97 ATOM 112 O TRP A 599 -13.121 -14.692 -9.468 1.00102.36 ATOM 113 CB TRP A 599 -14.976 -12.101 -10.189 1.00100.54 ATOM 114 CG TRP A 599 -15.382 -10.815 -9.514 1.00 96.81 ATOM 115 CD1 TRP A 599 -14.590 -10.009 -8.746 1.00 93.57 ATOM 116 CD2 TRP A 599 -16.678 -10.199 -9.535 1.00 96.04 ATOM 117 NE1 TRP A 599 -15.311 -8.932 -8.289 1.00 90.62 ATOM 118 CE2 TRP A 599 -16.595 -9.024 -8.760 1.00 94.04 ATOM 119 CE3 TRP A 599 -17.899 -10.525 -10.135 1.00 91.08 ATOM 120 CZ2 TRP A 599 -17.684 -8.175 -8.569 1.00 94.40 ATOM 121 CZ3 TRP A 599 -18.980 -9.681 -9.944 1.00 88.31 ATOM 122 CH2 TRP A 599 -18.866 -8.521 -9.166 1.00 94.53 ATOM 123 N ILE A 600 -14.923 -15.262 -10.706 1.00 95.69 ATOM 124 CA ILE A 600 -14.347 -16.481 -11.262 1.00 89.76 ATOM 125 C ILE A 600 -14.551 -16.490 -12.773 1.00 80.75 ATOM 126 O ILE A 600 -15.559 -15.993 -13.285 1.00 87.07 ATOM 127 CB ILE A 600 -14.965 -17.740 -10.601 1.00 95.50 ATOM 128 CG1 ILE A 600 -14.519 -19.029 -11.305 1.00 96.94 ATOM 129 CG2 ILE A 600 -16.485 -17.631 -10.555 1.00 92.74 ATOM 130 CD1 ILE A 600 -13.032 -19.311 -11.205 1.00 96.44 ATOM 131 N ASN A 601 -13.572 -17.049 -13.486 1.00 74.56 ATOM 132 CA ASN A 601 -13.631 -17.121 -14.940 1.00 79.55 ATOM 133 C ASN A 601 -14.865 -17.908 -15.383 1.00 90.03 ATOM 134 O ASN A 601 -15.253 -18.877 -14.719 1.00102.09 ATOM 135 CB ASN A 601 -12.360 -17.776 -15.486 1.00 80.78 ATOM 136 CG ASN A 601 -12.102 -17.437 -16.940 1.00 83.03 ATOM 137 OD1 ASN A 601 -12.432 -18.211 -17.840 1.00 80.39 ATOM 138 ND2 ASN A 601 -11.510 -16.273 -17.178 1.00 87.55 ATOM 139 N PRO A 602 -15.508 -17.520 -16.490 1.00 89.53 ATOM 140 CA PRO A 602 -16.744 -18.213 -16.893 1.00 86.79 ATOM 141 C PRO A 602 -16.530 -19.659 -17.306 1.00 94.11 ATOM 142 O PRO A 602 -17.454 -20.469 -17.159 1.00 98.80 ATOM 143 CB PRO A 602 -17.258 -17.365 -18.065 1.00 81.54 ATOM 144 CG PRO A 602 -16.601 -16.034 -17.898 1.00 82.63 ATOM 145 CD PRO A 602 -15.254 -16.325 -17.311 1.00 86.02 ATOM 146 N ALA A 603 -15.351 -20.010 -17.828 1.00 95.28 ATOM 147 CA ALA A 603 -15.092 -21.401 -18.186 1.00 99.91 ATOM 148 C ALA A 603 -15.181 -22.309 -16.965 1.00102.86 ATOM 149 O ALA A 603 -15.645 -23.452 -17.061 1.00102.98 ATOM 150 CB ALA A 603 -13.721 -21.526 -18.851 1.00 98.61 ATOM 151 N ASP A 604 -14.750 -21.814 -15.806 1.00102.77 ATOM 152 CA ASP A 604 -14.827 -22.566 -14.554 1.00102.88 ATOM 153 C ASP A 604 -16.124 -22.229 -13.815 1.00106.79 ATOM 154 O ASP A 604 -16.129 -21.724 -12.693 1.00107.28 ATOM 155 CB ASP A 604 -13.605 -22.275 -13.690 1.00 97.96 ATOM 156 CG ASP A 604 -12.300 -22.417 -14.454 1.00 93.13 ATOM 157 OD1 ASP A 604 -12.327 -22.918 -15.597 1.00 90.57 ATOM 158 OD2 ASP A 604 -11.247 -22.018 -13.913 1.00 91.46 ATOM 159 N VAL A 605 -17.242 -22.514 -14.475 1.00106.76 ATOM 160 CA VAL A 605 -18.560 -22.205 -13.929 1.00102.83 ATOM 161 C VAL A 605 -19.577 -23.162 -14.533 1.00107.56 ATOM 162 O VAL A 605 -19.575 -23.411 -15.743 1.00109.56 ATOM 163 CB VAL A 605 -18.949 -20.734 -14.192 1.00 92.53 ATOM 164 N GLU A 606 -20.454 -23.688 -13.679 1.00106.31 ATOM 165 CA GLU A 606 -21.524 -24.591 -14.093 1.00102.12 ATOM 166 C GLU A 606 -22.761 -23.761 -14.420 1.00103.12 ATOM 167 O GLU A 606 -23.382 -23.182 -13.523 1.00104.94 ATOM 168 CB GLU A 606 -21.823 -25.607 -12.992 1.00103.46 ATOM 169 N LEU A 607 -23.125 -23.709 -15.701 1.00101.48 ATOM 170 CA LEU A 607 -24.224 -22.870 -16.162 1.00102.98 ATOM 171 C LEU A 607 -25.525 -23.661 -16.231 1.00107.22 ATOM 172 O LEU A 607 -25.542 -24.817 -16.665 1.00109.08 ATOM 173 CB LEU A 607 -23.910 -22.274 -17.534 1.00101.47 ATOM 174 N THR A 608 -26.615 -23.022 -15.801 1.00102.04 ATOM 175 CA THR A 608 -27.960 -23.596 -15.847 1.00 89.10 ATOM 176 C THR A 608 -28.032 -24.949 -15.148 1.00 87.26 ATOM 177 O THR A 608 -28.798 -25.129 -14.200 1.00 91.54 ATOM 178 CB THR A 608 -28.458 -23.754 -17.300 1.00 86.85 ATOM 179 N GLY A 624 -19.872 -27.335 -6.953 1.00 94.37 ATOM 180 CA GLY A 624 -21.290 -27.342 -7.262 1.00101.47 ATOM 181 C GLY A 624 -22.093 -26.350 -6.442 1.00118.97 ATOM 182 O GLY A 624 -23.322 -26.331 -6.508 1.00122.05 ATOM 183 N LEU A 625 -21.395 -25.524 -5.668 1.00129.17 ATOM 184 CA LEU A 625 -22.061 -24.522 -4.852 1.00138.43 ATOM 185 C LEU A 625 -22.622 -23.405 -5.734 1.00133.96 ATOM 186 O LEU A 625 -22.070 -23.104 -6.796 1.00138.91 ATOM 187 CB LEU A 625 -21.093 -23.940 -3.825 1.00143.21 ATOM 188 N PRO A 626 -23.720 -22.773 -5.314 1.00123.34 ATOM 189 CA PRO A 626 -24.337 -21.732 -6.149 1.00114.95 ATOM 190 C PRO A 626 -23.490 -20.466 -6.192 1.00110.16 ATOM 191 O PRO A 626 -23.087 -19.934 -5.155 1.00110.85 ATOM 192 CB PRO A 626 -25.688 -21.484 -5.466 1.00112.65 ATOM 193 CG PRO A 626 -25.468 -21.888 -4.047 1.00113.89 ATOM 194 CD PRO A 626 -24.502 -23.038 -4.093 1.00119.25 ATOM 195 N VAL A 627 -23.227 -19.986 -7.406 1.00101.30 ATOM 196 CA VAL A 627 -22.496 -18.744 -7.635 1.00 89.38 ATOM 197 C VAL A 627 -23.452 -17.733 -8.252 1.00 95.64 ATOM 198 O VAL A 627 -24.295 -18.090 -9.083 1.00105.32 ATOM 199 CB VAL A 627 -21.269 -18.964 -8.540 1.00 75.29 ATOM 200 N VAL A 628 -23.315 -16.473 -7.850 1.00 87.33 ATOM 201 CA VAL A 628 -24.231 -15.423 -8.285 1.00 78.16 ATOM 202 C VAL A 628 -23.801 -14.907 -9.651 1.00 81.44 ATOM 203 O VAL A 628 -22.632 -14.564 -9.859 1.00 85.92 ATOM 204 CB VAL A 628 -24.277 -14.282 -7.258 1.00 71.76 ATOM 205 N ILE A 629 -24.747 -14.842 -10.585 1.00 80.02 ATOM 206 CA ILE A 629 -24.494 -14.264 -11.901 1.00 74.10 ATOM 207 C ILE A 629 -24.679 -12.753 -11.792 1.00 82.32 ATOM 208 O ILE A 629 -25.802 -12.266 -11.653 1.00 86.45 ATOM 209 CB ILE A 629 -25.419 -14.860 -12.967 1.00 69.75 ATOM 210 N SER A 630 -23.574 -12.010 -11.851 1.00 83.51 ATOM 211 CA SER A 630 -23.627 -10.558 -11.727 1.00 86.27 ATOM 212 C SER A 630 -23.943 -9.898 -13.066 1.00 86.44 ATOM 213 O SER A 630 -24.872 -10.314 -13.764 1.00 94.13 ATOM 214 CB SER A 630 -22.311 -10.022 -11.160 1.00 83.86 ATOM 215 OG SER A 630 -22.214 -8.619 -11.336 1.00 82.17 ATOM 216 N GLY A 631 -23.182 -8.869 -13.433 1.00 70.89 ATOM 217 CA GLY A 631 -23.479 -8.123 -14.638 1.00 58.28 ATOM 218 C GLY A 631 -22.436 -8.258 -15.726 1.00 67.75 ATOM 219 O GLY A 631 -21.314 -8.711 -15.475 1.00 65.52 ATOM 220 N THR A 632 -22.797 -7.858 -16.942 1.00 65.64 ATOM 221 CA THR A 632 -21.906 -7.959 -18.086 1.00 63.55 ATOM 222 C THR A 632 -21.053 -6.704 -18.209 1.00 68.37 ATOM 223 O THR A 632 -21.534 -5.583 -18.017 1.00 64.74 ATOM 224 CB THR A 632 -22.697 -8.179 -19.379 1.00 59.45 ATOM 225 OG1 THR A 632 -23.770 -7.234 -19.452 1.00 72.60 ATOM 226 CG2 THR A 632 -23.267 -9.585 -19.428 1.00 59.91 ATOM 227 N GLU A 633 -19.781 -6.904 -18.537 1.00 68.27 ATOM 228 CA GLU A 633 -18.853 -5.803 -18.740 1.00 59.14 ATOM 229 C GLU A 633 -17.702 -6.305 -19.598 1.00 55.05 ATOM 230 O GLU A 633 -17.614 -7.490 -19.924 1.00 58.81 ATOM 231 CB GLU A 633 -18.337 -5.253 -17.411 1.00 65.91 ATOM 232 CG GLU A 633 -17.460 -6.238 -16.673 1.00 73.73 ATOM 233 CD GLU A 633 -16.682 -5.596 -15.552 1.00 77.81 ATOM 234 OE1 GLU A 633 -17.262 -4.753 -14.837 1.00 74.20 ATOM 235 OE2 GLU A 633 -15.490 -5.933 -15.390 1.00 82.54 TER