HEADER LIGASE 31-DEC-69 7NU3 TITLE Crystal Structure of Neisseria gonorrhoeae LeuRS E169G mutant in TITLE 2 Complex with ATP and L-leucinol COMPND MOL_ID: 1; COMPND 2 MOLECULE: Leucine--tRNA ligase; COMPND 3 CHAIN: A; COMPND 4 MUTATION: YES; COMPND 5 EC: 6.1.1.4; COMPND 6 FRAGMENT: Leucyl-tRNA ; COMPND 7 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.27 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 592 REMARK 465 ASN A 593 REMARK 465 ASP A 594 REMARK 465 LYS A 595 REMARK 465 GLY A 596 REMARK 465 GLY A 597 REMARK 465 LYS A 598 REMARK 465 ASP A 599 REMARK 465 TRP A 600 REMARK 465 THR A 609 REMARK 465 PHE A 610 REMARK 465 ASP A 611 REMARK 465 ASP A 612 REMARK 465 LYS A 613 REMARK 465 GLY A 614 REMARK 465 ARG A 615 REMARK 465 PRO A 616 REMARK 465 VAL A 617 REMARK 465 SER A 618 REMARK 465 ALA A 619 REMARK 465 VAL A 620 REMARK 465 LEU A 621 REMARK 465 LYS A 622 REMARK 465 ALA A 623 REMARK 465 ASP A 624 REMARK 465 GLY A 625 REMARK 465 LEU A 626 DBREF 7NU3 A 1 876 UNP B4RNT1 SYL_NEIG2 1 876 SEQRES 1 A 51 VAL VAL CYS GLU THR TYR TYR ARG GLU ASN ASP LYS GLY SEQRES 2 A 51 GLY LYS ASP TRP ILE ASN PRO ALA ASP VAL GLU LEU THR SEQRES 3 A 51 PHE ASP ASP LYS GLY ARG PRO VAL SER ALA VAL LEU LYS SEQRES 4 A 51 ALA ASP GLY LEU PRO VAL VAL ILE SER GLY THR GLU ATOM 1 N VAL A 583 -16.035 -8.321 -27.116 1.00 42.51 ATOM 2 CA VAL A 583 -16.680 -9.588 -26.806 1.00 43.78 ATOM 3 C VAL A 583 -16.875 -9.643 -25.299 1.00 36.61 ATOM 4 O VAL A 583 -15.961 -9.310 -24.538 1.00 41.29 ATOM 5 CB VAL A 583 -15.841 -10.776 -27.308 1.00 48.32 ATOM 6 CG1 VAL A 583 -16.496 -12.106 -26.909 1.00 50.01 ATOM 7 CG2 VAL A 583 -15.658 -10.686 -28.822 1.00 41.21 ATOM 8 N VAL A 584 -18.074 -10.031 -24.862 1.00 42.15 ATOM 9 CA VAL A 584 -18.401 -10.036 -23.443 1.00 47.51 ATOM 10 C VAL A 584 -18.768 -11.449 -23.015 1.00 53.55 ATOM 11 O VAL A 584 -19.064 -12.321 -23.836 1.00 54.68 ATOM 12 CB VAL A 584 -19.537 -9.050 -23.095 1.00 43.09 ATOM 13 CG1 VAL A 584 -19.151 -7.630 -23.505 1.00 38.78 ATOM 14 CG2 VAL A 584 -20.833 -9.470 -23.761 1.00 37.45 ATOM 15 N CYS A 585 -18.749 -11.664 -21.700 1.00 56.52 ATOM 16 CA CYS A 585 -19.026 -12.983 -21.149 1.00 52.02 ATOM 17 C CYS A 585 -19.408 -12.861 -19.683 1.00 49.53 ATOM 18 O CYS A 585 -18.852 -12.040 -18.947 1.00 54.60 ATOM 19 CB CYS A 585 -17.821 -13.919 -21.282 1.00 49.70 ATOM 20 SG CYS A 585 -18.201 -15.596 -20.756 1.00 61.70 ATOM 21 N GLU A 586 -20.355 -13.701 -19.274 1.00 59.65 ATOM 22 CA GLU A 586 -20.764 -13.772 -17.877 1.00 82.00 ATOM 23 C GLU A 586 -19.572 -14.097 -16.983 1.00 97.30 ATOM 24 O GLU A 586 -18.685 -14.867 -17.358 1.00101.97 ATOM 25 CB GLU A 586 -21.856 -14.826 -17.714 1.00 81.84 ATOM 26 CG GLU A 586 -22.444 -14.918 -16.328 1.00 89.05 ATOM 27 CD GLU A 586 -23.640 -15.841 -16.291 1.00 97.29 ATOM 28 OE1 GLU A 586 -24.661 -15.469 -15.677 1.00103.57 ATOM 29 OE2 GLU A 586 -23.562 -16.934 -16.891 1.00 97.28 ATOM 30 N THR A 587 -19.555 -13.503 -15.794 1.00104.85 ATOM 31 CA THR A 587 -18.413 -13.577 -14.897 1.00110.09 ATOM 32 C THR A 587 -18.735 -14.415 -13.666 1.00115.90 ATOM 33 O THR A 587 -19.898 -14.610 -13.301 1.00119.22 ATOM 34 CB THR A 587 -17.968 -12.176 -14.465 1.00107.63 ATOM 35 OG1 THR A 587 -19.100 -11.448 -13.972 1.00111.23 ATOM 36 CG2 THR A 587 -17.357 -11.426 -15.636 1.00103.79 ATOM 37 N TYR A 588 -17.673 -14.916 -13.033 1.00119.48 ATOM 38 CA TYR A 588 -17.765 -15.678 -11.794 1.00119.00 ATOM 39 C TYR A 588 -16.495 -15.437 -10.985 1.00123.33 ATOM 40 O TYR A 588 -15.396 -15.403 -11.544 1.00128.35 ATOM 41 CB TYR A 588 -17.944 -17.180 -12.058 1.00110.97 ATOM 42 CG TYR A 588 -18.900 -17.516 -13.186 1.00102.52 ATOM 43 CD1 TYR A 588 -20.253 -17.719 -12.944 1.00 97.97 ATOM 44 CD2 TYR A 588 -18.445 -17.632 -14.494 1.00 99.78 ATOM 45 CE1 TYR A 588 -21.125 -18.028 -13.977 1.00 98.88 ATOM 46 CE2 TYR A 588 -19.308 -17.937 -15.531 1.00 97.12 ATOM 47 CZ TYR A 588 -20.645 -18.136 -15.269 1.00 98.06 ATOM 48 OH TYR A 588 -21.496 -18.442 -16.308 1.00 95.49 ATOM 49 N TYR A 589 -16.646 -15.273 -9.672 1.00118.07 ATOM 50 CA TYR A 589 -15.504 -15.001 -8.809 1.00111.87 ATOM 51 C TYR A 589 -15.752 -15.640 -7.446 1.00101.01 ATOM 52 O TYR A 589 -16.802 -16.238 -7.195 1.00 96.60 ATOM 53 CB TYR A 589 -15.250 -13.491 -8.692 1.00117.69 ATOM 54 CG TYR A 589 -16.215 -12.772 -7.770 1.00125.04 ATOM 55 CD1 TYR A 589 -15.897 -12.550 -6.433 1.00128.74 ATOM 56 CD2 TYR A 589 -17.445 -12.318 -8.231 1.00128.11 ATOM 57 CE1 TYR A 589 -16.776 -11.900 -5.579 1.00129.66 ATOM 58 CE2 TYR A 589 -18.331 -11.661 -7.383 1.00130.72 ATOM 59 CZ TYR A 589 -17.992 -11.457 -6.057 1.00128.30 ATOM 60 OH TYR A 589 -18.864 -10.810 -5.207 1.00122.69 ATOM 61 N ARG A 590 -14.767 -15.506 -6.562 1.00 94.92 ATOM 62 CA ARG A 590 -14.872 -16.027 -5.202 1.00 92.71 ATOM 63 C ARG A 590 -14.116 -15.137 -4.221 1.00 88.31 ATOM 64 O ARG A 590 -13.104 -14.529 -4.574 1.00 86.87 ATOM 65 CB ARG A 590 -14.338 -17.459 -5.126 1.00 92.52 ATOM 66 N ILE A 600 -12.209 -16.084 -11.862 1.00 93.97 ATOM 67 CA ILE A 600 -12.431 -17.488 -12.192 1.00100.24 ATOM 68 C ILE A 600 -12.945 -17.638 -13.626 1.00105.98 ATOM 69 O ILE A 600 -13.689 -16.792 -14.126 1.00105.50 ATOM 70 CB ILE A 600 -13.402 -18.143 -11.193 1.00 98.88 ATOM 71 N ASN A 601 -12.546 -18.727 -14.283 1.00107.72 ATOM 72 CA ASN A 601 -12.918 -18.931 -15.678 1.00105.88 ATOM 73 C ASN A 601 -14.254 -19.665 -15.769 1.00 96.61 ATOM 74 O ASN A 601 -14.526 -20.560 -14.962 1.00105.13 ATOM 75 CB ASN A 601 -11.840 -19.729 -16.413 1.00106.90 ATOM 76 CG ASN A 601 -11.640 -19.271 -17.851 1.00103.57 ATOM 77 OD1 ASN A 601 -12.146 -19.889 -18.789 1.00102.11 ATOM 78 ND2 ASN A 601 -10.887 -18.190 -18.030 1.00100.45 ATOM 79 N PRO A 602 -15.110 -19.285 -16.720 1.00 85.41 ATOM 80 CA PRO A 602 -16.367 -20.028 -16.916 1.00 87.30 ATOM 81 C PRO A 602 -16.164 -21.471 -17.360 1.00 91.54 ATOM 82 O PRO A 602 -17.055 -22.300 -17.138 1.00 93.57 ATOM 83 CB PRO A 602 -17.101 -19.205 -17.987 1.00 82.99 ATOM 84 CG PRO A 602 -16.483 -17.838 -17.915 1.00 79.24 ATOM 85 CD PRO A 602 -15.051 -18.056 -17.531 1.00 79.14 ATOM 86 N ALA A 603 -15.023 -21.802 -17.975 1.00 92.44 ATOM 87 CA ALA A 603 -14.773 -23.184 -18.374 1.00 95.40 ATOM 88 C ALA A 603 -14.506 -24.065 -17.158 1.00 97.56 ATOM 89 O ALA A 603 -14.952 -25.218 -17.110 1.00 96.57 ATOM 90 CB ALA A 603 -13.609 -23.236 -19.370 1.00 96.91 ATOM 91 N ASP A 604 -13.799 -23.534 -16.152 1.00104.62 ATOM 92 CA ASP A 604 -13.592 -24.227 -14.885 1.00109.88 ATOM 93 C ASP A 604 -14.782 -24.057 -13.941 1.00106.95 ATOM 94 O ASP A 604 -14.604 -24.018 -12.718 1.00107.69 ATOM 95 CB ASP A 604 -12.303 -23.741 -14.209 1.00112.35 ATOM 96 CG ASP A 604 -11.157 -23.582 -15.183 1.00113.17 ATOM 97 OD1 ASP A 604 -10.552 -22.486 -15.243 1.00109.49 ATOM 98 OD2 ASP A 604 -10.883 -24.560 -15.921 1.00116.39 ATOM 99 N VAL A 605 -15.994 -23.950 -14.490 1.00105.72 ATOM 100 CA VAL A 605 -17.200 -23.672 -13.724 1.00104.85 ATOM 101 C VAL A 605 -18.358 -24.438 -14.358 1.00103.74 ATOM 102 O VAL A 605 -18.411 -24.608 -15.579 1.00 99.89 ATOM 103 CB VAL A 605 -17.487 -22.140 -13.667 1.00104.92 ATOM 104 CG1 VAL A 605 -18.939 -21.819 -14.032 1.00106.34 ATOM 105 CG2 VAL A 605 -17.139 -21.557 -12.299 1.00105.93 ATOM 106 N GLU A 606 -19.284 -24.915 -13.524 1.00107.47 ATOM 107 CA GLU A 606 -20.450 -25.654 -13.989 1.00115.78 ATOM 108 C GLU A 606 -21.713 -24.825 -13.792 1.00118.45 ATOM 109 O GLU A 606 -21.724 -23.840 -13.051 1.00126.28 ATOM 110 CB GLU A 606 -20.590 -26.998 -13.261 1.00117.73 ATOM 111 N LEU A 607 -22.786 -25.236 -14.467 1.00109.94 ATOM 112 CA LEU A 607 -24.056 -24.516 -14.394 1.00 99.53 ATOM 113 C LEU A 607 -25.208 -25.452 -14.039 1.00101.92 ATOM 114 O LEU A 607 -26.126 -25.657 -14.836 1.00105.51 ATOM 115 CB LEU A 607 -24.339 -23.806 -15.719 1.00 91.25 ATOM 116 N PRO A 626 -19.865 -23.883 -4.837 1.00125.47 ATOM 117 CA PRO A 626 -20.263 -22.921 -5.871 1.00126.60 ATOM 118 C PRO A 626 -19.554 -21.581 -5.700 1.00128.67 ATOM 119 O PRO A 626 -19.046 -21.303 -4.613 1.00132.93 ATOM 120 CB PRO A 626 -21.773 -22.780 -5.655 1.00124.53 ATOM 121 CG PRO A 626 -22.180 -24.068 -5.026 1.00124.92 ATOM 122 CD PRO A 626 -21.028 -24.474 -4.153 1.00126.04 ATOM 123 N VAL A 627 -19.521 -20.772 -6.761 1.00125.70 ATOM 124 CA VAL A 627 -18.889 -19.458 -6.745 1.00117.35 ATOM 125 C VAL A 627 -19.958 -18.395 -6.981 1.00109.36 ATOM 126 O VAL A 627 -21.118 -18.696 -7.264 1.00110.41 ATOM 127 CB VAL A 627 -17.762 -19.332 -7.789 1.00111.53 ATOM 128 N VAL A 628 -19.542 -17.137 -6.878 1.00104.00 ATOM 129 CA VAL A 628 -20.463 -16.014 -7.028 1.00103.13 ATOM 130 C VAL A 628 -20.747 -15.817 -8.515 1.00116.89 ATOM 131 O VAL A 628 -19.889 -15.346 -9.265 1.00114.61 ATOM 132 CB VAL A 628 -19.903 -14.737 -6.396 1.00 83.56 ATOM 133 CG1 VAL A 628 -20.958 -13.645 -6.403 1.00 76.75 ATOM 134 CG2 VAL A 628 -19.424 -15.023 -4.981 1.00 83.05 ATOM 135 N ILE A 629 -21.952 -16.189 -8.942 1.00124.40 ATOM 136 CA ILE A 629 -22.402 -15.923 -10.304 1.00119.92 ATOM 137 C ILE A 629 -22.848 -14.470 -10.397 1.00122.78 ATOM 138 O ILE A 629 -23.607 -13.982 -9.551 1.00131.61 ATOM 139 CB ILE A 629 -23.535 -16.885 -10.706 1.00103.92 ATOM 140 CG1 ILE A 629 -24.274 -16.356 -11.941 1.00 91.76 ATOM 141 CG2 ILE A 629 -24.493 -17.118 -9.540 1.00102.28 ATOM 142 CD1 ILE A 629 -25.442 -17.216 -12.378 1.00 82.53 ATOM 143 N SER A 630 -22.369 -13.769 -11.422 1.00113.50 ATOM 144 CA SER A 630 -22.697 -12.359 -11.580 1.00105.32 ATOM 145 C SER A 630 -23.272 -12.090 -12.965 1.00109.24 ATOM 146 O SER A 630 -23.892 -12.972 -13.571 1.00107.98 ATOM 147 CB SER A 630 -21.456 -11.499 -11.326 1.00 96.14 ATOM 148 OG SER A 630 -21.729 -10.127 -11.540 1.00 89.37 ATOM 149 N GLY A 631 -23.080 -10.872 -13.470 1.00105.70 ATOM 150 CA GLY A 631 -23.592 -10.481 -14.762 1.00101.96 ATOM 151 C GLY A 631 -22.556 -10.626 -15.862 1.00 96.92 ATOM 152 O GLY A 631 -21.482 -11.204 -15.684 1.00100.45 ATOM 153 N THR A 632 -22.891 -10.068 -17.018 1.00 86.53 ATOM 154 CA THR A 632 -22.065 -10.170 -18.211 1.00 66.19 ATOM 155 C THR A 632 -21.244 -8.899 -18.391 1.00 59.01 ATOM 156 O THR A 632 -21.773 -7.792 -18.250 1.00 71.21 ATOM 157 CB THR A 632 -22.942 -10.413 -19.438 1.00 67.02 ATOM 158 OG1 THR A 632 -23.804 -11.533 -19.190 1.00 65.75 ATOM 159 CG2 THR A 632 -22.082 -10.691 -20.660 1.00 64.75 ATOM 160 N GLU A 633 -19.959 -9.055 -18.698 1.00 50.44 ATOM 161 CA GLU A 633 -19.106 -7.912 -18.984 1.00 49.99 ATOM 162 C GLU A 633 -17.998 -8.343 -19.934 1.00 46.73 ATOM 163 O GLU A 633 -17.867 -9.522 -20.277 1.00 62.24 ATOM 164 CB GLU A 633 -18.529 -7.306 -17.705 1.00 71.65 ATOM 165 CG GLU A 633 -17.281 -7.997 -17.179 1.00 84.86 ATOM 166 CD GLU A 633 -16.565 -7.169 -16.130 1.00 91.50 ATOM 167 OE1 GLU A 633 -17.247 -6.637 -15.228 1.00 93.27 ATOM 168 OE2 GLU A 633 -15.324 -7.037 -16.218 1.00 92.96 ATOM 169 PG ATP A1003 -7.386 -4.948 -22.296 0.86110.23 ATOM 170 O1G ATP A1003 -8.019 -3.598 -22.113 0.86112.39 ATOM 171 O2G ATP A1003 -6.628 -5.447 -21.060 0.86109.49 ATOM 172 O3G ATP A1003 -8.395 -6.037 -22.686 0.86115.98 ATOM 173 PB ATP A1003 -6.222 -4.055 -24.820 0.86 80.46 ATOM 174 O1B ATP A1003 -7.556 -3.919 -25.454 0.86 83.65 ATOM 175 O2B ATP A1003 -5.521 -2.738 -24.476 0.86 86.84 ATOM 176 O3B ATP A1003 -6.311 -4.898 -23.473 0.86 97.34 ATOM 177 PA ATP A1003 -5.189 -6.432 -26.209 0.86 57.80 ATOM 178 O1A ATP A1003 -5.796 -7.335 -25.205 0.86 61.50 ATOM 179 O2A ATP A1003 -3.746 -6.776 -26.619 0.86 55.21 ATOM 180 O3A ATP A1003 -5.208 -4.923 -25.694 0.86 69.74 ATOM 181 O5' ATP A1003 -6.064 -6.465 -27.568 0.86 61.32 ATOM 182 C5' ATP A1003 -5.506 -6.605 -28.893 0.86 59.32 ATOM 183 C4' ATP A1003 -6.583 -6.305 -29.908 0.86 56.67 ATOM 184 O4' ATP A1003 -7.759 -7.096 -29.610 0.86 49.33 ATOM 185 C3' ATP A1003 -7.054 -4.849 -29.949 0.86 52.48 ATOM 186 O3' ATP A1003 -7.441 -4.435 -31.252 0.86 52.66 ATOM 187 C2' ATP A1003 -8.271 -4.865 -29.029 0.86 52.73 ATOM 188 O2' ATP A1003 -9.221 -3.882 -29.410 0.86 52.43 ATOM 189 C1' ATP A1003 -8.855 -6.245 -29.328 0.86 52.89 ATOM 190 N9 ATP A1003 -9.612 -6.800 -28.216 0.86 53.71 ATOM 191 C8 ATP A1003 -9.174 -7.002 -26.935 0.86 58.53 ATOM 192 N7 ATP A1003 -10.095 -7.451 -26.113 0.86 61.23 ATOM 193 C5 ATP A1003 -11.220 -7.556 -26.917 0.86 57.83 ATOM 194 C6 ATP A1003 -12.540 -7.976 -26.651 0.86 45.49 ATOM 195 N6 ATP A1003 -12.968 -8.363 -25.446 0.86 45.07 ATOM 196 N1 ATP A1003 -13.418 -7.969 -27.678 0.86 46.12 ATOM 197 C2 ATP A1003 -13.001 -7.563 -28.882 0.86 53.72 ATOM 198 N3 ATP A1003 -11.787 -7.144 -29.250 0.86 54.04 ATOM 199 C4 ATP A1003 -10.941 -7.164 -28.215 0.86 57.03 TER