HEADER LIGASE 31-DEC-69 7NU6 TITLE Crystal Structure of Neisseria gonorrhoeae LeuRS in Complex with ATP TITLE 2 in Conformation 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: Leucine--tRNA ligase; COMPND 3 CHAIN: A; COMPND 4 EC: 6.1.1.4; COMPND 5 FRAGMENT: Leucyl-tRNA ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.20 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 591 REMARK 465 GLU A 592 REMARK 465 ASN A 593 REMARK 465 ASP A 594 REMARK 465 LYS A 595 REMARK 465 GLY A 596 REMARK 465 GLY A 597 REMARK 465 LYS A 598 DBREF 7NU6 A 1 876 UNP B4RNT1 SYL_NEIG2 1 876 SEQRES 1 A 25 VAL VAL CYS GLU THR TYR TYR ARG GLU ASN ASP LYS GLY SEQRES 2 A 25 GLY LYS ASP TRP ILE ASN PRO ALA ASP VAL GLU LEU SEQRES 1 A 7 VAL VAL ILE SER GLY THR GLU ATOM 1 N VAL A 583 -16.061 -8.755 -27.227 1.00 47.70 ATOM 2 CA VAL A 583 -16.702 -10.004 -26.855 1.00 52.17 ATOM 3 C VAL A 583 -16.837 -10.011 -25.342 1.00 59.30 ATOM 4 O VAL A 583 -15.885 -9.687 -24.623 1.00 62.26 ATOM 5 CB VAL A 583 -15.892 -11.209 -27.357 1.00 54.38 ATOM 6 CG1 VAL A 583 -16.545 -12.511 -26.924 1.00 44.87 ATOM 7 CG2 VAL A 583 -15.753 -11.136 -28.872 1.00 46.60 ATOM 8 N VAL A 584 -18.030 -10.344 -24.855 1.00 61.51 ATOM 9 CA VAL A 584 -18.316 -10.316 -23.429 1.00 59.18 ATOM 10 C VAL A 584 -18.716 -11.715 -22.985 1.00 62.53 ATOM 11 O VAL A 584 -19.113 -12.563 -23.788 1.00 63.50 ATOM 12 CB VAL A 584 -19.416 -9.288 -23.079 1.00 50.19 ATOM 13 CG1 VAL A 584 -19.025 -7.916 -23.585 1.00 46.12 ATOM 14 CG2 VAL A 584 -20.750 -9.713 -23.677 1.00 53.42 ATOM 15 N CYS A 585 -18.596 -11.951 -21.682 1.00 65.46 ATOM 16 CA CYS A 585 -18.945 -13.236 -21.097 1.00 71.00 ATOM 17 C CYS A 585 -19.132 -13.048 -19.600 1.00 75.62 ATOM 18 O CYS A 585 -18.570 -12.128 -18.996 1.00 78.50 ATOM 19 CB CYS A 585 -17.875 -14.298 -21.378 1.00 70.86 ATOM 20 SG CYS A 585 -18.164 -15.887 -20.568 1.00 78.71 ATOM 21 N GLU A 586 -19.921 -13.943 -19.014 1.00 73.63 ATOM 22 CA GLU A 586 -20.213 -13.909 -17.591 1.00 87.01 ATOM 23 C GLU A 586 -18.939 -14.052 -16.757 1.00103.16 ATOM 24 O GLU A 586 -17.899 -14.526 -17.226 1.00106.73 ATOM 25 CB GLU A 586 -21.190 -15.022 -17.233 1.00 74.78 ATOM 26 CG GLU A 586 -21.865 -14.844 -15.902 1.00 81.77 ATOM 27 CD GLU A 586 -23.299 -15.299 -15.939 1.00 93.50 ATOM 28 OE1 GLU A 586 -24.167 -14.546 -15.452 1.00102.43 ATOM 29 OE2 GLU A 586 -23.556 -16.403 -16.467 1.00 90.17 ATOM 30 N THR A 587 -19.039 -13.636 -15.495 1.00107.14 ATOM 31 CA THR A 587 -17.929 -13.642 -14.555 1.00110.25 ATOM 32 C THR A 587 -18.233 -14.579 -13.391 1.00121.04 ATOM 33 O THR A 587 -19.397 -14.826 -13.059 1.00121.85 ATOM 34 CB THR A 587 -17.655 -12.231 -14.026 1.00100.83 ATOM 35 OG1 THR A 587 -18.894 -11.531 -13.871 1.00103.76 ATOM 36 CG2 THR A 587 -16.763 -11.464 -14.987 1.00 90.52 ATOM 37 N TYR A 588 -17.170 -15.110 -12.783 1.00125.94 ATOM 38 CA TYR A 588 -17.283 -16.004 -11.636 1.00133.02 ATOM 39 C TYR A 588 -16.069 -15.812 -10.737 1.00133.58 ATOM 40 O TYR A 588 -14.989 -15.437 -11.203 1.00136.58 ATOM 41 CB TYR A 588 -17.407 -17.474 -12.064 1.00132.26 ATOM 42 CG TYR A 588 -18.467 -17.712 -13.117 1.00130.05 ATOM 43 CD1 TYR A 588 -19.785 -17.963 -12.761 1.00126.62 ATOM 44 CD2 TYR A 588 -18.150 -17.669 -14.470 1.00129.43 ATOM 45 CE1 TYR A 588 -20.755 -18.173 -13.723 1.00128.13 ATOM 46 CE2 TYR A 588 -19.111 -17.875 -15.437 1.00127.36 ATOM 47 CZ TYR A 588 -20.410 -18.128 -15.060 1.00129.07 ATOM 48 OH TYR A 588 -21.366 -18.336 -16.028 1.00131.82 ATOM 49 N TYR A 589 -16.259 -16.075 -9.445 1.00128.91 ATOM 50 CA TYR A 589 -15.233 -15.802 -8.438 1.00118.90 ATOM 51 C TYR A 589 -15.629 -16.330 -7.061 1.00107.48 ATOM 52 O TYR A 589 -15.064 -15.919 -6.045 1.00100.37 ATOM 53 CB TYR A 589 -14.947 -14.296 -8.348 1.00125.04 ATOM 54 CG TYR A 589 -16.168 -13.447 -8.076 1.00134.21 ATOM 55 CD1 TYR A 589 -17.118 -13.225 -9.065 1.00137.46 ATOM 56 CD2 TYR A 589 -16.372 -12.866 -6.831 1.00139.32 ATOM 57 CE1 TYR A 589 -18.234 -12.460 -8.823 1.00142.17 ATOM 58 CE2 TYR A 589 -17.488 -12.093 -6.580 1.00144.14 ATOM 59 CZ TYR A 589 -18.415 -11.893 -7.582 1.00147.33 ATOM 60 OH TYR A 589 -19.531 -11.125 -7.344 1.00153.05 ATOM 61 N ASP A 598 -10.204 -13.155 -6.262 1.00 76.12 ATOM 62 CA ASP A 598 -10.772 -14.498 -6.322 1.00 88.80 ATOM 63 C ASP A 598 -11.316 -14.824 -7.717 1.00101.89 ATOM 64 O ASP A 598 -12.170 -15.698 -7.861 1.00105.41 ATOM 65 CB ASP A 598 -11.885 -14.655 -5.277 1.00 83.87 ATOM 66 N TRP A 599 -10.795 -14.142 -8.738 1.00105.65 ATOM 67 CA TRP A 599 -11.376 -14.204 -10.076 1.00109.99 ATOM 68 C TRP A 599 -11.089 -15.539 -10.759 1.00107.27 ATOM 69 O TRP A 599 -9.936 -15.974 -10.840 1.00111.04 ATOM 70 CB TRP A 599 -10.844 -13.054 -10.929 1.00113.44 ATOM 71 CG TRP A 599 -11.590 -11.775 -10.716 1.00117.71 ATOM 72 CD1 TRP A 599 -11.091 -10.608 -10.217 1.00117.84 ATOM 73 CD2 TRP A 599 -12.977 -11.537 -10.985 1.00120.72 ATOM 74 NE1 TRP A 599 -12.079 -9.656 -10.163 1.00119.60 ATOM 75 CE2 TRP A 599 -13.247 -10.202 -10.629 1.00121.09 ATOM 76 CE3 TRP A 599 -14.016 -12.323 -11.495 1.00121.40 ATOM 77 CZ2 TRP A 599 -14.513 -9.635 -10.766 1.00121.58 ATOM 78 CZ3 TRP A 599 -15.267 -11.760 -11.628 1.00119.47 ATOM 79 CH2 TRP A 599 -15.507 -10.430 -11.266 1.00119.89 ATOM 80 N ILE A 600 -12.143 -16.170 -11.284 1.00 99.17 ATOM 81 CA ILE A 600 -12.061 -17.498 -11.879 1.00 90.62 ATOM 82 C ILE A 600 -12.461 -17.434 -13.349 1.00 94.21 ATOM 83 O ILE A 600 -13.269 -16.596 -13.765 1.00 89.37 ATOM 84 CB ILE A 600 -12.946 -18.514 -11.121 1.00 83.91 ATOM 85 N ASN A 601 -11.879 -18.349 -14.144 1.00 97.70 ATOM 86 CA ASN A 601 -12.207 -18.536 -15.553 1.00 98.55 ATOM 87 C ASN A 601 -13.474 -19.382 -15.688 1.00102.02 ATOM 88 O ASN A 601 -13.657 -20.347 -14.943 1.00 94.05 ATOM 89 CB ASN A 601 -11.048 -19.216 -16.287 1.00 98.51 ATOM 90 CG ASN A 601 -10.915 -18.758 -17.733 1.00 96.68 ATOM 91 OD1 ASN A 601 -11.376 -19.432 -18.655 1.00100.83 ATOM 92 ND2 ASN A 601 -10.271 -17.614 -17.935 1.00 90.68 ATOM 93 N PRO A 602 -14.365 -19.040 -16.627 1.00106.19 ATOM 94 CA PRO A 602 -15.623 -19.798 -16.756 1.00105.03 ATOM 95 C PRO A 602 -15.438 -21.224 -17.243 1.00106.28 ATOM 96 O PRO A 602 -16.335 -22.051 -17.025 1.00104.51 ATOM 97 CB PRO A 602 -16.434 -18.971 -17.766 1.00104.31 ATOM 98 CG PRO A 602 -15.770 -17.626 -17.804 1.00104.55 ATOM 99 CD PRO A 602 -14.324 -17.877 -17.528 1.00105.41 ATOM 100 N ALA A 603 -14.320 -21.536 -17.907 1.00106.94 ATOM 101 CA ALA A 603 -14.089 -22.905 -18.361 1.00106.84 ATOM 102 C ALA A 603 -14.012 -23.871 -17.186 1.00105.89 ATOM 103 O ALA A 603 -14.518 -24.997 -17.268 1.00110.57 ATOM 104 CB ALA A 603 -12.818 -22.972 -19.209 1.00102.84 ATOM 105 N ASP A 604 -13.390 -23.442 -16.081 1.00107.21 ATOM 106 CA ASP A 604 -13.212 -24.150 -14.820 1.00110.42 ATOM 107 C ASP A 604 -14.509 -24.406 -14.083 1.00107.38 ATOM 108 O ASP A 604 -14.458 -25.018 -13.013 1.00104.34 ATOM 109 CB ASP A 604 -12.283 -23.328 -13.917 1.00106.65 ATOM 110 CG ASP A 604 -10.876 -23.192 -14.473 1.00105.72 ATOM 111 OD1 ASP A 604 -10.115 -22.314 -13.997 1.00107.04 ATOM 112 OD2 ASP A 604 -10.525 -23.966 -15.383 1.00105.61 ATOM 113 N VAL A 605 -15.644 -23.940 -14.601 1.00108.15 ATOM 114 CA VAL A 605 -16.904 -23.920 -13.869 1.00102.92 ATOM 115 C VAL A 605 -17.946 -24.761 -14.600 1.00 96.14 ATOM 116 O VAL A 605 -17.901 -24.923 -15.825 1.00 93.22 ATOM 117 CB VAL A 605 -17.406 -22.471 -13.678 1.00100.77 ATOM 118 CG1 VAL A 605 -18.395 -22.401 -12.533 1.00104.20 ATOM 119 CG2 VAL A 605 -16.228 -21.537 -13.426 1.00 97.94 ATOM 120 N GLU A 606 -18.892 -25.302 -13.827 1.00 90.96 ATOM 121 CA GLU A 606 -20.000 -26.083 -14.359 1.00 93.17 ATOM 122 C GLU A 606 -21.317 -25.497 -13.868 1.00 99.40 ATOM 123 O GLU A 606 -21.411 -25.004 -12.741 1.00103.66 ATOM 124 CB GLU A 606 -19.894 -27.559 -13.954 1.00 92.28 ATOM 125 N LEU A 607 -22.335 -25.557 -14.727 1.00 97.99 ATOM 126 CA LEU A 607 -23.629 -24.936 -14.445 1.00 96.24 ATOM 127 C LEU A 607 -24.537 -25.824 -13.600 1.00101.33 ATOM 128 O LEU A 607 -25.508 -25.348 -13.007 1.00103.73 ATOM 129 CB LEU A 607 -24.334 -24.578 -15.752 1.00 92.38 TER ATOM 1 N VAL A 627 -18.716 -20.592 -6.336 1.00119.69 ATOM 2 CA VAL A 627 -18.327 -19.329 -6.948 1.00114.36 ATOM 3 C VAL A 627 -19.551 -18.450 -7.147 1.00109.31 ATOM 4 O VAL A 627 -20.624 -18.944 -7.496 1.00109.55 ATOM 5 CB VAL A 627 -17.604 -19.557 -8.289 1.00111.35 ATOM 6 N VAL A 628 -19.395 -17.145 -6.916 1.00106.96 ATOM 7 CA VAL A 628 -20.451 -16.205 -7.269 1.00105.46 ATOM 8 C VAL A 628 -20.622 -16.193 -8.784 1.00111.32 ATOM 9 O VAL A 628 -19.680 -16.465 -9.542 1.00 98.20 ATOM 10 CB VAL A 628 -20.141 -14.797 -6.729 1.00 98.36 ATOM 11 N ILE A 629 -21.842 -15.897 -9.234 1.00124.40 ATOM 12 CA ILE A 629 -22.146 -15.831 -10.661 1.00126.08 ATOM 13 C ILE A 629 -22.554 -14.406 -11.012 1.00125.31 ATOM 14 O ILE A 629 -23.745 -14.105 -11.161 1.00126.81 ATOM 15 CB ILE A 629 -23.247 -16.834 -11.051 1.00123.95 ATOM 16 N SER A 630 -21.562 -13.528 -11.158 1.00121.90 ATOM 17 CA SER A 630 -21.788 -12.102 -11.362 1.00119.78 ATOM 18 C SER A 630 -22.334 -11.788 -12.754 1.00123.09 ATOM 19 O SER A 630 -23.024 -12.614 -13.363 1.00122.24 ATOM 20 CB SER A 630 -20.487 -11.330 -11.110 1.00113.18 ATOM 21 OG SER A 630 -20.599 -9.976 -11.507 1.00113.41 ATOM 22 N GLY A 631 -22.033 -10.595 -13.262 1.00120.08 ATOM 23 CA GLY A 631 -22.674 -10.073 -14.453 1.00113.81 ATOM 24 C GLY A 631 -21.807 -10.122 -15.697 1.00101.61 ATOM 25 O GLY A 631 -20.588 -9.980 -15.632 1.00104.23 ATOM 26 N THR A 632 -22.467 -10.314 -16.838 1.00 89.09 ATOM 27 CA THR A 632 -21.786 -10.364 -18.125 1.00 73.33 ATOM 28 C THR A 632 -20.960 -9.101 -18.356 1.00 72.73 ATOM 29 O THR A 632 -21.386 -7.994 -18.020 1.00 74.69 ATOM 30 CB THR A 632 -22.821 -10.547 -19.230 1.00 73.53 ATOM 31 OG1 THR A 632 -23.579 -11.733 -18.960 1.00 76.73 ATOM 32 CG2 THR A 632 -22.145 -10.680 -20.581 1.00 72.32 ATOM 33 N GLU A 633 -19.763 -9.272 -18.920 1.00 69.44 ATOM 34 CA GLU A 633 -18.802 -8.178 -19.023 1.00 70.44 ATOM 35 C GLU A 633 -17.708 -8.558 -20.019 1.00 72.04 ATOM 36 O GLU A 633 -17.499 -9.737 -20.316 1.00 66.50 ATOM 37 CB GLU A 633 -18.204 -7.845 -17.649 1.00 84.53 ATOM 38 CG GLU A 633 -17.157 -6.751 -17.638 1.00 96.90 ATOM 39 CD GLU A 633 -16.373 -6.722 -16.349 1.00105.88 ATOM 40 OE1 GLU A 633 -16.905 -6.209 -15.340 1.00110.07 ATOM 41 OE2 GLU A 633 -15.231 -7.228 -16.345 1.00105.84 ATOM 42 PG ATP A1003 -1.647 -3.396 -24.965 1.00160.63 ATOM 43 O1G ATP A1003 -0.163 -3.361 -25.174 1.00158.46 ATOM 44 O2G ATP A1003 -2.160 -2.246 -24.091 1.00159.77 ATOM 45 O3G ATP A1003 -2.130 -4.708 -24.336 1.00161.69 ATOM 46 PB ATP A1003 -2.638 -4.238 -27.590 1.00154.63 ATOM 47 O1B ATP A1003 -3.488 -3.630 -28.637 1.00156.32 ATOM 48 O2B ATP A1003 -1.248 -4.683 -28.066 1.00157.16 ATOM 49 O3B ATP A1003 -2.418 -3.256 -26.355 1.00158.95 ATOM 50 PA ATP A1003 -4.821 -5.915 -26.505 1.00103.93 ATOM 51 O1A ATP A1003 -5.421 -4.971 -25.520 1.00 87.06 ATOM 52 O2A ATP A1003 -4.771 -7.382 -26.077 1.00100.62 ATOM 53 O3A ATP A1003 -3.334 -5.496 -26.898 1.00134.85 ATOM 54 O5' ATP A1003 -5.653 -5.882 -27.889 1.00 99.14 ATOM 55 C5' ATP A1003 -5.380 -6.695 -29.051 1.00 90.86 ATOM 56 C4' ATP A1003 -6.513 -6.540 -30.040 1.00 77.35 ATOM 57 O4' ATP A1003 -7.629 -7.375 -29.646 1.00 66.47 ATOM 58 C3' ATP A1003 -7.072 -5.120 -30.171 1.00 70.00 ATOM 59 O3' ATP A1003 -7.437 -4.793 -31.507 1.00 67.44 ATOM 60 C2' ATP A1003 -8.297 -5.153 -29.257 1.00 64.12 ATOM 61 O2' ATP A1003 -9.285 -4.212 -29.654 1.00 63.46 ATOM 62 C1' ATP A1003 -8.789 -6.584 -29.466 1.00 62.85 ATOM 63 N9 ATP A1003 -9.535 -7.108 -28.331 1.00 60.77 ATOM 64 C8 ATP A1003 -9.091 -7.256 -27.051 1.00 57.46 ATOM 65 N7 ATP A1003 -9.995 -7.676 -26.190 1.00 55.62 ATOM 66 C5 ATP A1003 -11.132 -7.821 -26.998 1.00 54.98 ATOM 67 C6 ATP A1003 -12.443 -8.233 -26.689 1.00 49.67 ATOM 68 N6 ATP A1003 -12.861 -8.561 -25.460 1.00 43.27 ATOM 69 N1 ATP A1003 -13.331 -8.279 -27.711 1.00 44.96 ATOM 70 C2 ATP A1003 -12.923 -7.937 -28.937 1.00 55.35 ATOM 71 N3 ATP A1003 -11.714 -7.532 -29.336 1.00 61.46 ATOM 72 C4 ATP A1003 -10.860 -7.490 -28.303 1.00 60.65 TER