HEADER LIGASE 31-DEC-69 7NUB TITLE Crystal Structure of Neisseria gonorrhoeae LeuRS L550G mutant in TITLE 2 Complex with the Reaction Intermediate Leu-AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: Leucine--tRNA ligase; COMPND 3 CHAIN: A; COMPND 4 MUTATION: YES; COMPND 5 EC: 6.1.1.4; COMPND 6 FRAGMENT: Leucyl-tRNA ; COMPND 7 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.02 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 592 REMARK 465 ASN A 593 REMARK 465 ASP A 594 REMARK 465 LYS A 595 REMARK 465 GLY A 596 REMARK 465 GLY A 597 REMARK 465 LYS A 598 REMARK 465 ASP A 599 DBREF 7NUB A 1 876 UNP B4RNT1 SYL_NEIG2 1 876 SEQRES 1 A 22 VAL VAL CYS GLU THR TYR TYR ARG GLU ASN ASP LYS GLY SEQRES 2 A 22 GLY LYS ASP TRP ILE ASN PRO ALA ASP SEQRES 1 A 7 VAL VAL ILE SER GLY THR GLU ATOM 1 N VAL A 583 -15.862 -8.676 -25.705 1.00 38.96 ATOM 2 CA VAL A 583 -16.502 -9.929 -25.322 1.00 45.35 ATOM 3 C VAL A 583 -16.621 -9.964 -23.805 1.00 48.10 ATOM 4 O VAL A 583 -15.659 -9.661 -23.089 1.00 52.52 ATOM 5 CB VAL A 583 -15.708 -11.134 -25.850 1.00 46.40 ATOM 6 CG1 VAL A 583 -16.364 -12.437 -25.418 1.00 39.27 ATOM 7 CG2 VAL A 583 -15.590 -11.069 -27.366 1.00 42.66 ATOM 8 N VAL A 584 -17.802 -10.325 -23.308 1.00 44.19 ATOM 9 CA VAL A 584 -18.081 -10.280 -21.880 1.00 44.99 ATOM 10 C VAL A 584 -18.520 -11.658 -21.399 1.00 53.53 ATOM 11 O VAL A 584 -19.019 -12.487 -22.164 1.00 57.79 ATOM 12 CB VAL A 584 -19.143 -9.217 -21.534 1.00 42.32 ATOM 13 CG1 VAL A 584 -18.575 -7.821 -21.726 1.00 38.64 ATOM 14 CG2 VAL A 584 -20.383 -9.406 -22.388 1.00 39.63 ATOM 15 N CYS A 585 -18.324 -11.891 -20.102 1.00 48.44 ATOM 16 CA CYS A 585 -18.683 -13.153 -19.470 1.00 54.15 ATOM 17 C CYS A 585 -18.783 -12.936 -17.967 1.00 55.79 ATOM 18 O CYS A 585 -18.232 -11.976 -17.423 1.00 43.91 ATOM 19 CB CYS A 585 -17.665 -14.254 -19.791 1.00 62.27 ATOM 20 SG CYS A 585 -18.177 -15.919 -19.299 1.00 89.49 ATOM 21 N GLU A 586 -19.495 -13.844 -17.304 1.00 56.54 ATOM 22 CA GLU A 586 -19.653 -13.766 -15.859 1.00 63.17 ATOM 23 C GLU A 586 -18.313 -13.974 -15.161 1.00 87.21 ATOM 24 O GLU A 586 -17.437 -14.694 -15.648 1.00 91.08 ATOM 25 CB GLU A 586 -20.666 -14.804 -15.375 1.00 49.38 ATOM 26 N THR A 587 -18.159 -13.334 -14.003 1.00 97.98 ATOM 27 CA THR A 587 -16.903 -13.346 -13.268 1.00105.46 ATOM 28 C THR A 587 -17.149 -13.719 -11.812 1.00121.17 ATOM 29 O THR A 587 -18.253 -13.565 -11.283 1.00130.44 ATOM 30 CB THR A 587 -16.195 -11.985 -13.341 1.00102.65 ATOM 31 N TYR A 588 -16.092 -14.216 -11.168 1.00123.26 ATOM 32 CA TYR A 588 -16.132 -14.623 -9.770 1.00112.35 ATOM 33 C TYR A 588 -14.820 -14.256 -9.095 1.00128.12 ATOM 34 O TYR A 588 -13.747 -14.400 -9.687 1.00122.98 ATOM 35 CB TYR A 588 -16.379 -16.132 -9.626 1.00 83.33 ATOM 36 CG TYR A 588 -17.377 -16.695 -10.611 1.00 81.58 ATOM 37 CD1 TYR A 588 -18.743 -16.582 -10.386 1.00 77.21 ATOM 38 CD2 TYR A 588 -16.954 -17.337 -11.766 1.00 85.15 ATOM 39 CE1 TYR A 588 -19.659 -17.095 -11.284 1.00 76.78 ATOM 40 CE2 TYR A 588 -17.862 -17.851 -12.669 1.00 83.20 ATOM 41 CZ TYR A 588 -19.212 -17.729 -12.424 1.00 79.36 ATOM 42 OH TYR A 588 -20.117 -18.242 -13.324 1.00 78.32 ATOM 43 N TYR A 589 -14.912 -13.789 -7.850 1.00151.93 ATOM 44 CA TYR A 589 -13.742 -13.425 -7.065 1.00158.38 ATOM 45 C TYR A 589 -13.925 -13.919 -5.637 1.00159.42 ATOM 46 O TYR A 589 -15.012 -14.341 -5.234 1.00163.96 ATOM 47 CB TYR A 589 -13.499 -11.911 -7.079 1.00164.73 ATOM 48 N ARG A 590 -12.842 -13.859 -4.868 1.00139.77 ATOM 49 CA ARG A 590 -12.871 -14.274 -3.471 1.00125.74 ATOM 50 C ARG A 590 -11.945 -13.406 -2.627 1.00125.73 ATOM 51 O ARG A 590 -11.400 -12.412 -3.109 1.00123.47 ATOM 52 CB ARG A 590 -12.479 -15.747 -3.339 1.00112.70 ATOM 53 N TRP A 599 -9.560 -13.884 -7.915 1.00160.50 ATOM 54 CA TRP A 599 -10.479 -14.087 -9.029 1.00157.20 ATOM 55 C TRP A 599 -10.592 -15.568 -9.382 1.00143.94 ATOM 56 O TRP A 599 -9.594 -16.288 -9.405 1.00146.99 ATOM 57 CB TRP A 599 -10.025 -13.285 -10.251 1.00161.34 ATOM 58 CG TRP A 599 -10.254 -11.809 -10.125 1.00158.36 ATOM 59 CD1 TRP A 599 -9.312 -10.851 -9.891 1.00151.18 ATOM 60 CD2 TRP A 599 -11.508 -11.122 -10.229 1.00159.36 ATOM 61 NE1 TRP A 599 -9.900 -9.610 -9.842 1.00150.52 ATOM 62 CE2 TRP A 599 -11.247 -9.749 -10.046 1.00155.35 ATOM 63 CE3 TRP A 599 -12.824 -11.533 -10.460 1.00159.63 ATOM 64 CZ2 TRP A 599 -12.255 -8.787 -10.086 1.00155.08 ATOM 65 CZ3 TRP A 599 -13.822 -10.577 -10.497 1.00155.79 ATOM 66 CH2 TRP A 599 -13.532 -9.220 -10.312 1.00154.02 ATOM 67 N ILE A 600 -11.815 -16.015 -9.657 1.00125.94 ATOM 68 CA ILE A 600 -12.086 -17.406 -9.995 1.00116.71 ATOM 69 C ILE A 600 -12.550 -17.484 -11.442 1.00114.20 ATOM 70 O ILE A 600 -13.205 -16.571 -11.958 1.00124.05 ATOM 71 CB ILE A 600 -13.134 -18.031 -9.051 1.00120.97 ATOM 72 N ASN A 601 -12.207 -18.592 -12.098 1.00101.49 ATOM 73 CA ASN A 601 -12.561 -18.836 -13.491 1.00 84.77 ATOM 74 C ASN A 601 -13.866 -19.625 -13.574 1.00 78.41 ATOM 75 O ASN A 601 -14.114 -20.499 -12.738 1.00 81.47 ATOM 76 CB ASN A 601 -11.449 -19.603 -14.202 1.00 87.89 ATOM 77 CG ASN A 601 -11.508 -19.458 -15.712 1.00 83.18 ATOM 78 OD1 ASN A 601 -12.263 -20.159 -16.387 1.00 76.56 ATOM 79 ND2 ASN A 601 -10.712 -18.540 -16.249 1.00 75.21 ATOM 80 N PRO A 602 -14.715 -19.320 -14.562 1.00 96.56 ATOM 81 CA PRO A 602 -16.007 -20.026 -14.655 1.00104.95 ATOM 82 C PRO A 602 -15.880 -21.535 -14.786 1.00107.05 ATOM 83 O PRO A 602 -16.647 -22.271 -14.153 1.00112.02 ATOM 84 CB PRO A 602 -16.648 -19.401 -15.901 1.00101.80 ATOM 85 CG PRO A 602 -16.055 -18.038 -15.979 1.00 96.73 ATOM 86 CD PRO A 602 -14.638 -18.183 -15.495 1.00 97.12 ATOM 87 N ALA A 603 -14.934 -22.019 -15.585 1.00103.43 ATOM 88 CA ALA A 603 -14.793 -23.457 -15.815 1.00 94.71 ATOM 89 C ALA A 603 -14.215 -24.211 -14.618 1.00 94.09 ATOM 90 O ALA A 603 -13.947 -25.412 -14.758 1.00 98.70 ATOM 91 CB ALA A 603 -13.926 -23.703 -17.051 1.00 76.32 ATOM 92 N ASP A 604 -14.013 -23.581 -13.465 1.00 94.27 ATOM 93 CA ASP A 604 -13.448 -24.265 -12.308 1.00106.62 ATOM 94 C ASP A 604 -14.359 -24.140 -11.090 1.00113.72 ATOM 95 O ASP A 604 -15.584 -24.147 -11.215 1.00114.58 ATOM 96 CB ASP A 604 -12.060 -23.708 -11.984 1.00104.51 ATOM 97 CG ASP A 604 -11.167 -23.622 -13.206 1.00 99.38 ATOM 98 OD1 ASP A 604 -11.224 -24.537 -14.054 1.00 95.78 ATOM 99 OD2 ASP A 604 -10.407 -22.637 -13.319 1.00 97.38 TER ATOM 1 N VAL A 627 -17.376 -19.122 -4.537 1.00131.29 ATOM 2 CA VAL A 627 -16.885 -17.752 -4.470 1.00137.96 ATOM 3 C VAL A 627 -18.008 -16.772 -4.787 1.00149.58 ATOM 4 O VAL A 627 -19.161 -17.170 -4.960 1.00151.54 ATOM 5 CB VAL A 627 -15.693 -17.542 -5.419 1.00132.24 ATOM 6 N VAL A 628 -17.665 -15.487 -4.865 1.00158.44 ATOM 7 CA VAL A 628 -18.644 -14.440 -5.139 1.00156.20 ATOM 8 C VAL A 628 -19.015 -14.464 -6.615 1.00158.77 ATOM 9 O VAL A 628 -18.411 -15.194 -7.408 1.00162.37 ATOM 10 CB VAL A 628 -18.108 -13.057 -4.728 1.00145.19 ATOM 11 N ILE A 629 -20.014 -13.670 -6.992 1.00143.21 ATOM 12 CA ILE A 629 -20.452 -13.541 -8.377 1.00126.62 ATOM 13 C ILE A 629 -20.319 -12.073 -8.757 1.00133.55 ATOM 14 O ILE A 629 -21.124 -11.238 -8.326 1.00126.06 ATOM 15 CB ILE A 629 -21.889 -14.039 -8.580 1.00 99.23 ATOM 16 CG1 ILE A 629 -21.985 -15.534 -8.269 1.00 82.25 ATOM 17 CG2 ILE A 629 -22.354 -13.761 -10.003 1.00 89.06 ATOM 18 CD1 ILE A 629 -23.358 -16.123 -8.510 1.00 73.65 ATOM 19 N SER A 630 -19.302 -11.755 -9.560 1.00149.40 ATOM 20 CA SER A 630 -19.044 -10.372 -9.939 1.00150.76 ATOM 21 C SER A 630 -19.956 -9.883 -11.055 1.00151.09 ATOM 22 O SER A 630 -20.046 -8.670 -11.276 1.00154.13 ATOM 23 CB SER A 630 -17.583 -10.207 -10.362 1.00148.66 ATOM 24 N GLY A 631 -20.630 -10.789 -11.760 1.00134.84 ATOM 25 CA GLY A 631 -21.512 -10.402 -12.842 1.00110.25 ATOM 26 C GLY A 631 -20.809 -10.350 -14.182 1.00 90.76 ATOM 27 O GLY A 631 -19.614 -10.627 -14.321 1.00 86.52 ATOM 28 N THR A 632 -21.585 -9.979 -15.198 1.00 80.83 ATOM 29 CA THR A 632 -21.069 -9.898 -16.559 1.00 75.58 ATOM 30 C THR A 632 -20.034 -8.782 -16.657 1.00 76.73 ATOM 31 O THR A 632 -20.341 -7.615 -16.394 1.00 90.48 ATOM 32 CB THR A 632 -22.211 -9.662 -17.544 1.00 74.21 ATOM 33 OG1 THR A 632 -23.209 -10.677 -17.372 1.00 80.39 ATOM 34 CG2 THR A 632 -21.699 -9.707 -18.971 1.00 61.21 ATOM 35 N GLU A 633 -18.810 -9.142 -17.036 1.00 70.04 ATOM 36 CA GLU A 633 -17.702 -8.201 -17.109 1.00 68.10 ATOM 37 C GLU A 633 -16.898 -8.478 -18.371 1.00 61.46 ATOM 38 O GLU A 633 -17.048 -9.521 -19.011 1.00 47.64 ATOM 39 CB GLU A 633 -16.804 -8.301 -15.869 1.00 72.50 ATOM 40 CG GLU A 633 -16.131 -7.000 -15.471 1.00 80.80 ATOM 41 CD GLU A 633 -16.880 -6.275 -14.372 1.00100.33 ATOM 42 OE1 GLU A 633 -17.714 -6.916 -13.699 1.00104.00 ATOM 43 OE2 GLU A 633 -16.633 -5.066 -14.179 1.00107.30 ATOM 44 C2 USB A 901 -12.449 -7.903 -27.386 1.00 45.80 ATOM 45 C4 USB A 901 -10.394 -7.669 -26.627 1.00 41.67 ATOM 46 C5 USB A 901 -10.742 -8.147 -25.375 1.00 42.30 ATOM 47 C6 USB A 901 -12.089 -8.514 -25.185 1.00 45.32 ATOM 48 C8 USB A 901 -8.671 -7.696 -25.281 1.00 43.64 ATOM 49 N USB A 901 -0.597 -4.555 -26.835 1.00 33.65 ATOM 50 CA USB A 901 -1.758 -3.653 -26.794 1.00 37.73 ATOM 51 C USB A 901 -3.028 -4.326 -26.273 1.00 49.32 ATOM 52 O USB A 901 -4.041 -3.716 -26.071 1.00 61.80 ATOM 53 CB USB A 901 -2.009 -3.080 -28.191 1.00 34.68 ATOM 54 CG USB A 901 -0.954 -2.057 -28.597 1.00 28.69 ATOM 55 CD1 USB A 901 -1.178 -1.583 -30.022 1.00 21.11 ATOM 56 CD2 USB A 901 -0.941 -0.880 -27.637 1.00 32.97 ATOM 57 C1' USB A 901 -8.223 -6.807 -27.613 1.00 29.22 ATOM 58 C2' USB A 901 -7.595 -5.464 -27.258 1.00 37.72 ATOM 59 C3' USB A 901 -6.388 -5.437 -28.202 1.00 40.21 ATOM 60 C4' USB A 901 -6.009 -6.917 -28.333 1.00 50.10 ATOM 61 C5' USB A 901 -4.758 -7.334 -27.600 1.00 60.42 ATOM 62 N1 USB A 901 -12.930 -8.377 -26.233 1.00 47.99 ATOM 63 N3 USB A 901 -11.204 -7.524 -27.681 1.00 42.09 ATOM 64 N6 USB A 901 -12.576 -8.984 -24.031 1.00 47.13 ATOM 65 N7 USB A 901 -9.641 -8.161 -24.531 1.00 45.44 ATOM 66 N9 USB A 901 -9.054 -7.375 -26.557 1.00 31.48 ATOM 67 O1P USB A 901 -4.231 -6.217 -23.996 1.00 76.33 ATOM 68 O2' USB A 901 -8.507 -4.407 -27.534 1.00 42.78 ATOM 69 O2P USB A 901 -2.812 -7.979 -25.179 1.00 53.33 ATOM 70 O3' USB A 901 -6.719 -4.876 -29.467 1.00 41.52 ATOM 71 O4' USB A 901 -7.138 -7.681 -27.852 1.00 47.55 ATOM 72 O5' USB A 901 -4.952 -7.125 -26.186 1.00 61.18 ATOM 73 OPP USB A 901 -2.938 -5.629 -26.055 1.00 48.11 ATOM 74 P USB A 901 -3.702 -6.797 -25.250 1.00 57.82 TER