HEADER TRANSCRIPTION 31-DEC-69 7NVZ TITLE RNA polymerase II pre-initiation complex with closed promoter DNA in TITLE 2 distal position COMPND MOL_ID: 9; COMPND 2 MOLECULE: RPB1; COMPND 3 CHAIN: A; EXPDTA ELECTRON MICROSCOPY DBREF 7NVZ A 1 1970 PDB 7NVZ 7NVZ 1 1970 SEQRES 1 A 29 THR PRO SER LEU THR VAL PHE LEU LEU GLY GLN SER ALA SEQRES 2 A 29 ARG ASP ALA GLU ARG ALA LYS ASP ILE LEU CYS ARG LEU SEQRES 3 A 29 GLU HIS THR SEQRES 1 A 63 LEU GLN GLY ILE GLU GLN ILE SER LYS VAL TYR MET HIS SEQRES 2 A 63 LEU PRO GLN THR ASP ASN LYS LYS LYS ILE ILE ILE THR SEQRES 3 A 63 GLU ASP GLY GLU PHE LYS ALA LEU GLN GLU TRP ILE LEU SEQRES 4 A 63 GLU THR ASP GLY VAL SER LEU MET ARG VAL LEU SER GLU SEQRES 5 A 63 LYS ASP VAL ASP PRO VAL ARG THR THR SER ASN ATOM 1 N THR A1136 190.040 207.424 233.713 1.00 10.39 ATOM 2 CA THR A1136 189.822 205.978 233.776 1.00 10.39 ATOM 3 C THR A1136 190.491 205.306 232.582 1.00 10.39 ATOM 4 O THR A1136 189.817 204.800 231.677 1.00 10.39 ATOM 5 CB THR A1136 188.328 205.652 233.813 1.00 10.39 ATOM 6 OG1 THR A1136 187.667 206.522 234.741 1.00 10.39 ATOM 7 CG2 THR A1136 188.105 204.206 234.232 1.00 10.39 ATOM 8 N PRO A1137 191.822 205.283 232.550 1.00 8.75 ATOM 9 CA PRO A1137 192.516 204.580 231.465 1.00 8.75 ATOM 10 C PRO A1137 192.214 203.089 231.489 1.00 8.75 ATOM 11 O PRO A1137 192.035 202.486 232.550 1.00 8.75 ATOM 12 CB PRO A1137 193.997 204.861 231.746 1.00 8.75 ATOM 13 CG PRO A1137 194.060 205.225 233.191 1.00 8.75 ATOM 14 CD PRO A1137 192.758 205.887 233.512 1.00 8.75 ATOM 15 N SER A1138 192.155 202.495 230.299 1.00 11.16 ATOM 16 CA SER A1138 191.852 201.075 230.185 1.00 11.16 ATOM 17 C SER A1138 192.204 200.591 228.786 1.00 11.16 ATOM 18 O SER A1138 192.363 201.384 227.854 1.00 11.16 ATOM 19 CB SER A1138 190.375 200.797 230.493 1.00 11.16 ATOM 20 OG SER A1138 190.001 199.494 230.079 1.00 11.16 ATOM 21 N LEU A1139 192.324 199.272 228.658 1.00 12.00 ATOM 22 CA LEU A1139 192.522 198.593 227.385 1.00 12.00 ATOM 23 C LEU A1139 191.397 197.598 227.147 1.00 12.00 ATOM 24 O LEU A1139 190.733 197.141 228.081 1.00 12.00 ATOM 25 CB LEU A1139 193.863 197.848 227.341 1.00 12.00 ATOM 26 CG LEU A1139 195.081 198.602 226.822 1.00 12.00 ATOM 27 CD1 LEU A1139 195.515 199.648 227.809 1.00 12.00 ATOM 28 CD2 LEU A1139 196.209 197.619 226.554 1.00 12.00 ATOM 29 N THR A1140 191.237 197.232 225.872 1.00 8.77 ATOM 30 CA THR A1140 190.274 196.227 225.418 1.00 8.77 ATOM 31 C THR A1140 191.073 195.181 224.647 1.00 8.77 ATOM 32 O THR A1140 191.197 195.250 223.421 1.00 8.77 ATOM 33 CB THR A1140 189.176 196.849 224.556 1.00 8.77 ATOM 34 OG1 THR A1140 188.687 198.042 225.181 1.00 8.77 ATOM 35 CG2 THR A1140 188.027 195.868 224.358 1.00 8.77 ATOM 36 N VAL A1141 191.611 194.213 225.378 1.00 11.92 ATOM 37 CA VAL A1141 192.449 193.166 224.815 1.00 11.92 ATOM 38 C VAL A1141 191.564 192.084 224.215 1.00 11.92 ATOM 39 O VAL A1141 190.638 191.578 224.869 1.00 11.92 ATOM 40 CB VAL A1141 193.377 192.584 225.893 1.00 11.92 ATOM 41 CG1 VAL A1141 194.411 191.665 225.265 1.00 11.92 ATOM 42 CG2 VAL A1141 194.044 193.706 226.682 1.00 11.92 ATOM 43 N PHE A1142 191.856 191.726 222.968 1.00 12.58 ATOM 44 CA PHE A1142 191.177 190.664 222.245 1.00 12.58 ATOM 45 C PHE A1142 192.133 189.491 222.081 1.00 12.58 ATOM 46 O PHE A1142 193.335 189.684 221.872 1.00 12.58 ATOM 47 CB PHE A1142 190.715 191.149 220.870 1.00 12.58 ATOM 48 CG PHE A1142 189.652 192.205 220.923 1.00 12.58 ATOM 49 CD1 PHE A1142 189.994 193.544 221.016 1.00 12.58 ATOM 50 CD2 PHE A1142 188.312 191.863 220.866 1.00 12.58 ATOM 51 CE1 PHE A1142 189.019 194.521 221.061 1.00 12.58 ATOM 52 CE2 PHE A1142 187.333 192.836 220.910 1.00 12.58 ATOM 53 CZ PHE A1142 187.687 194.166 221.007 1.00 12.58 ATOM 54 N LEU A1143 191.600 188.279 222.176 1.00 12.26 ATOM 55 CA LEU A1143 192.396 187.065 222.064 1.00 12.26 ATOM 56 C LEU A1143 192.163 186.413 220.708 1.00 12.26 ATOM 57 O LEU A1143 191.032 186.362 220.217 1.00 12.26 ATOM 58 CB LEU A1143 192.055 186.086 223.188 1.00 12.26 ATOM 59 CG LEU A1143 191.897 186.718 224.575 1.00 12.26 ATOM 60 CD1 LEU A1143 191.378 185.700 225.578 1.00 12.26 ATOM 61 CD2 LEU A1143 193.217 187.316 225.044 1.00 12.26 ATOM 62 N LEU A1144 193.248 185.923 220.101 1.00 15.86 ATOM 63 CA LEU A1144 193.191 185.328 218.773 1.00 15.86 ATOM 64 C LEU A1144 193.323 183.812 218.772 1.00 15.86 ATOM 65 O LEU A1144 192.895 183.175 217.805 1.00 15.86 ATOM 66 CB LEU A1144 194.289 185.922 217.877 1.00 15.86 ATOM 67 CG LEU A1144 195.721 185.393 218.029 1.00 15.86 ATOM 68 CD1 LEU A1144 196.596 185.913 216.899 1.00 15.86 ATOM 69 CD2 LEU A1144 196.312 185.768 219.379 1.00 15.86 ATOM 70 N GLY A1145 193.897 183.224 219.816 1.00 12.23 ATOM 71 CA GLY A1145 194.093 181.792 219.891 1.00 12.23 ATOM 72 C GLY A1145 192.904 181.078 220.496 1.00 12.23 ATOM 73 O GLY A1145 191.802 181.621 220.604 1.00 12.23 ATOM 74 N GLN A1146 193.139 179.826 220.898 1.00 6.71 ATOM 75 CA GLN A1146 192.085 179.039 221.526 1.00 6.71 ATOM 76 C GLN A1146 191.564 179.690 222.799 1.00 6.71 ATOM 77 O GLN A1146 190.428 179.415 223.200 1.00 6.71 ATOM 78 CB GLN A1146 192.595 177.631 221.839 1.00 6.71 ATOM 79 CG GLN A1146 192.377 176.626 220.719 1.00 6.71 ATOM 80 CD GLN A1146 190.929 176.191 220.599 1.00 6.71 ATOM 81 OE1 GLN A1146 190.164 176.267 221.559 1.00 6.71 ATOM 82 NE2 GLN A1146 190.548 175.727 219.414 1.00 6.71 ATOM 83 N SER A1147 192.366 180.543 223.442 1.00 10.19 ATOM 84 CA SER A1147 191.914 181.206 224.660 1.00 10.19 ATOM 85 C SER A1147 190.690 182.072 224.405 1.00 10.19 ATOM 86 O SER A1147 189.885 182.293 225.316 1.00 10.19 ATOM 87 CB SER A1147 193.043 182.055 225.246 1.00 10.19 ATOM 88 OG SER A1147 193.614 182.892 224.257 1.00 10.19 ATOM 89 N ALA A1148 190.531 182.570 223.177 1.00 11.16 ATOM 90 CA ALA A1148 189.378 183.408 222.870 1.00 11.16 ATOM 91 C ALA A1148 188.077 182.649 223.089 1.00 11.16 ATOM 92 O ALA A1148 187.121 183.189 223.656 1.00 11.16 ATOM 93 CB ALA A1148 189.469 183.913 221.431 1.00 11.16 ATOM 94 N ARG A1149 188.023 181.394 222.647 1.00 8.53 ATOM 95 CA ARG A1149 186.834 180.570 222.802 1.00 8.53 ATOM 96 C ARG A1149 186.870 179.697 224.050 1.00 8.53 ATOM 97 O ARG A1149 185.860 179.062 224.369 1.00 8.53 ATOM 98 CB ARG A1149 186.655 179.685 221.564 1.00 8.53 ATOM 99 CG ARG A1149 186.294 180.461 220.308 1.00 8.53 ATOM 100 CD ARG A1149 186.049 179.540 219.124 1.00 8.53 ATOM 101 NE ARG A1149 187.198 178.681 218.847 1.00 8.53 ATOM 102 CZ ARG A1149 188.326 179.095 218.277 1.00 8.53 ATOM 103 NH1 ARG A1149 188.471 180.365 217.920 1.00 8.53 ATOM 104 NH2 ARG A1149 189.314 178.237 218.066 1.00 8.53 ATOM 105 N ASP A1150 187.996 179.650 224.759 1.00 7.53 ATOM 106 CA ASP A1150 188.124 178.880 225.990 1.00 7.53 ATOM 107 C ASP A1150 188.278 179.840 227.162 1.00 7.53 ATOM 108 O ASP A1150 189.224 180.634 227.199 1.00 7.53 ATOM 109 CB ASP A1150 189.317 177.927 225.917 1.00 7.53 ATOM 110 CG ASP A1150 189.388 176.991 227.107 1.00 7.53 ATOM 111 OD1 ASP A1150 188.367 176.342 227.416 1.00 7.53 ATOM 112 OD2 ASP A1150 190.465 176.906 227.734 1.00 7.53 ATOM 113 N ALA A1151 187.350 179.760 228.118 1.00 8.05 ATOM 114 CA ALA A1151 187.388 180.662 229.266 1.00 8.05 ATOM 115 C ALA A1151 188.645 180.450 230.103 1.00 8.05 ATOM 116 O ALA A1151 189.274 181.416 230.548 1.00 8.05 ATOM 117 CB ALA A1151 186.137 180.467 230.122 1.00 8.05 ATOM 118 N GLU A1152 189.023 179.191 230.332 1.00 6.34 ATOM 119 CA GLU A1152 190.156 178.898 231.207 1.00 6.34 ATOM 120 C GLU A1152 191.452 179.471 230.642 1.00 6.34 ATOM 121 O GLU A1152 192.218 180.137 231.352 1.00 6.34 ATOM 122 CB GLU A1152 190.264 177.384 231.407 1.00 6.34 ATOM 123 CG GLU A1152 191.374 176.945 232.349 1.00 6.34 ATOM 124 CD GLU A1152 192.704 176.744 231.646 1.00 6.34 ATOM 125 OE1 GLU A1152 192.757 176.898 230.408 1.00 6.34 ATOM 126 OE2 GLU A1152 193.698 176.432 232.335 1.00 6.34 ATOM 127 N ARG A1153 191.712 179.225 229.358 1.00 8.06 ATOM 128 CA ARG A1153 192.916 179.755 228.729 1.00 8.06 ATOM 129 C ARG A1153 192.881 181.279 228.701 1.00 8.06 ATOM 130 O ARG A1153 193.923 181.938 228.827 1.00 8.06 ATOM 131 CB ARG A1153 193.028 179.174 227.320 1.00 8.06 ATOM 132 CG ARG A1153 193.489 177.722 227.296 1.00 8.06 ATOM 133 CD ARG A1153 194.985 177.550 227.469 1.00 8.06 ATOM 134 NE ARG A1153 195.727 178.104 226.343 1.00 8.06 ATOM 135 CZ ARG A1153 195.768 177.545 225.136 1.00 8.06 ATOM 136 NH1 ARG A1153 195.092 176.428 224.894 1.00 8.06 ATOM 137 NH2 ARG A1153 196.472 178.107 224.163 1.00 8.06 ATOM 138 N ALA A1154 191.683 181.853 228.568 1.00 10.07 ATOM 139 CA ALA A1154 191.539 183.297 228.696 1.00 10.07 ATOM 140 C ALA A1154 191.947 183.756 230.088 1.00 10.07 ATOM 141 O ALA A1154 192.570 184.811 230.242 1.00 10.07 ATOM 142 CB ALA A1154 190.101 183.714 228.389 1.00 10.07 ATOM 143 N LYS A1155 191.601 182.982 231.120 1.00 11.17 ATOM 144 CA LYS A1155 192.074 183.316 232.459 1.00 11.17 ATOM 145 C LYS A1155 193.589 183.204 232.554 1.00 11.17 ATOM 146 O LYS A1155 194.217 183.957 233.304 1.00 11.17 ATOM 147 CB LYS A1155 191.418 182.421 233.510 1.00 11.17 ATOM 148 CG LYS A1155 191.628 182.935 234.931 1.00 11.17 ATOM 149 CD LYS A1155 191.149 181.954 235.988 1.00 11.17 ATOM 150 CE LYS A1155 192.315 181.405 236.799 1.00 11.17 ATOM 151 NZ LYS A1155 191.870 180.549 237.934 1.00 11.17 ATOM 152 N ASP A1156 194.195 182.268 231.821 1.00 10.14 ATOM 153 CA ASP A1156 195.655 182.207 231.795 1.00 10.14 ATOM 154 C ASP A1156 196.243 183.490 231.217 1.00 10.14 ATOM 155 O ASP A1156 197.212 184.043 231.755 1.00 10.14 ATOM 156 CB ASP A1156 196.118 180.993 230.989 1.00 10.14 ATOM 157 CG ASP A1156 195.583 179.685 231.542 1.00 10.14 ATOM 158 OD1 ASP A1156 195.337 179.609 232.763 1.00 10.14 ATOM 159 OD2 ASP A1156 195.413 178.731 230.754 1.00 10.14 ATOM 160 N ILE A1157 195.657 183.988 230.127 1.00 12.14 ATOM 161 CA ILE A1157 196.124 185.255 229.562 1.00 12.14 ATOM 162 C ILE A1157 195.884 186.395 230.549 1.00 12.14 ATOM 163 O ILE A1157 196.705 187.313 230.681 1.00 12.14 ATOM 164 CB ILE A1157 195.448 185.531 228.205 1.00 12.14 ATOM 165 CG1 ILE A1157 195.497 184.293 227.304 1.00 12.14 ATOM 166 CG2 ILE A1157 196.113 186.710 227.509 1.00 12.14 ATOM 167 CD1 ILE A1157 196.865 183.661 227.183 1.00 12.14 ATOM 168 N LEU A1158 194.757 186.351 231.263 1.00 13.76 ATOM 169 CA LEU A1158 194.477 187.362 232.276 1.00 13.76 ATOM 170 C LEU A1158 195.544 187.356 233.360 1.00 13.76 ATOM 171 O LEU A1158 195.973 188.415 233.829 1.00 13.76 ATOM 172 CB LEU A1158 193.099 187.121 232.891 1.00 13.76 ATOM 173 CG LEU A1158 192.544 188.276 233.727 1.00 13.76 ATOM 174 CD1 LEU A1158 191.036 188.375 233.578 1.00 13.76 ATOM 175 CD2 LEU A1158 192.927 188.122 235.193 1.00 13.76 ATOM 176 N CYS A1159 195.962 186.167 233.791 1.00 12.36 ATOM 177 CA CYS A1159 197.039 186.073 234.769 1.00 12.36 ATOM 178 C CYS A1159 198.335 186.638 234.205 1.00 12.36 ATOM 179 O CYS A1159 199.066 187.350 234.903 1.00 12.36 ATOM 180 CB CYS A1159 197.229 184.621 235.209 1.00 12.36 ATOM 181 SG CYS A1159 195.868 183.956 236.199 1.00 12.36 ATOM 182 N ARG A1160 198.636 186.337 232.939 1.00 11.42 ATOM 183 CA ARG A1160 199.860 186.871 232.349 1.00 11.42 ATOM 184 C ARG A1160 199.818 188.380 232.148 1.00 11.42 ATOM 185 O ARG A1160 200.881 188.989 231.986 1.00 11.42 ATOM 186 CB ARG A1160 200.166 186.207 231.004 1.00 11.42 ATOM 187 CG ARG A1160 200.364 184.704 231.057 1.00 11.42 ATOM 188 CD ARG A1160 201.012 184.208 229.770 1.00 11.42 ATOM 189 NE ARG A1160 200.323 184.679 228.572 1.00 11.42 ATOM 190 CZ ARG A1160 200.712 184.408 227.330 1.00 11.42 ATOM 191 NH1 ARG A1160 201.800 183.679 227.114 1.00 11.42 ATOM 192 NH2 ARG A1160 200.022 184.877 226.300 1.00 11.42 ATOM 193 N LEU A1161 198.637 188.998 232.145 1.00 12.72 ATOM 194 CA LEU A1161 198.555 190.450 231.992 1.00 12.72 ATOM 195 C LEU A1161 198.459 191.192 233.322 1.00 12.72 ATOM 196 O LEU A1161 199.222 192.134 233.553 1.00 12.72 ATOM 197 CB LEU A1161 197.366 190.834 231.101 1.00 12.72 ATOM 198 CG LEU A1161 197.403 190.314 229.664 1.00 12.72 ATOM 199 CD1 LEU A1161 196.169 190.761 228.901 1.00 12.72 ATOM 200 CD2 LEU A1161 198.661 190.803 228.965 1.00 12.72 ATOM 201 N GLU A1162 197.542 190.796 234.201 1.00 20.20 ATOM 202 CA GLU A1162 197.358 191.514 235.456 1.00 20.20 ATOM 203 C GLU A1162 198.647 191.513 236.270 1.00 20.20 ATOM 204 O GLU A1162 199.315 190.483 236.401 1.00 20.20 ATOM 205 CB GLU A1162 196.223 190.891 236.269 1.00 20.20 ATOM 206 CG GLU A1162 195.646 191.828 237.322 1.00 20.20 ATOM 207 CD GLU A1162 194.497 191.210 238.095 1.00 20.20 ATOM 208 OE1 GLU A1162 193.962 190.175 237.644 1.00 20.20 ATOM 209 OE2 GLU A1162 194.128 191.761 239.154 1.00 20.20 ATOM 210 N HIS A1163 198.990 192.675 236.821 1.00 20.81 ATOM 211 CA HIS A1163 200.203 192.807 237.618 1.00 20.81 ATOM 212 C HIS A1163 199.999 192.162 238.982 1.00 20.81 ATOM 213 O HIS A1163 199.093 192.545 239.730 1.00 20.81 ATOM 214 CB HIS A1163 200.573 194.280 237.776 1.00 20.81 ATOM 215 CG HIS A1163 201.906 194.500 238.420 1.00 20.81 ATOM 216 ND1 HIS A1163 202.137 195.507 239.331 1.00 20.81 ATOM 217 CD2 HIS A1163 203.080 193.838 238.286 1.00 20.81 ATOM 218 CE1 HIS A1163 203.395 195.458 239.729 1.00 20.81 ATOM 219 NE2 HIS A1163 203.989 194.454 239.110 1.00 20.81 ATOM 220 N THR A1164 200.839 191.182 239.305 1.00 24.58 ATOM 221 CA THR A1164 200.790 190.482 240.583 1.00 24.58 ATOM 222 C THR A1164 202.135 190.636 241.276 1.00 24.58 ATOM 223 O THR A1164 203.179 190.336 240.686 1.00 24.58 ATOM 224 CB THR A1164 200.454 189.002 240.389 1.00 24.58 ATOM 225 OG1 THR A1164 201.465 188.379 239.587 1.00 24.58 ATOM 226 CG2 THR A1164 199.102 188.846 239.706 1.00 24.58 TER