HEADER TRANSCRIPTION 31-DEC-69 7O4K TITLE Yeast TFIIH in the contracted state within the pre-initiation complex COMPND MOL_ID: 12; COMPND 2 MOLECULE: DNA-directed RNA polymerases I, II, and III subunit RPABC2; COMPND 3 CHAIN: F; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR F 137 REMARK 465 LEU F 138 REMARK 465 PRO F 139 REMARK 465 ASP F 140 REMARK 465 GLY F 141 REMARK 465 SER F 142 REMARK 465 PHE F 143 DBREF 7O4K F 1 155 UNP P20435 RPAB2_YEAST 1 155 SEQRES 1 F 17 ARG ILE LEU GLY THR ARG ALA LEU GLN ILE SER MET ASN SEQRES 2 F 17 ALA PRO VAL PHE SEQRES 1 F 18 ILE PRO LEU VAL ILE ARG ARG TYR LEU PRO ASP GLY SER SEQRES 2 F 18 PHE GLU ASP TRP SER ATOM 1 N ARG F 92 192.517 250.172 184.485 1.00 84.19 ATOM 2 CA ARG F 92 191.116 249.843 184.717 1.00 84.19 ATOM 3 C ARG F 92 190.351 251.054 185.243 1.00 84.19 ATOM 4 O ARG F 92 189.121 251.049 185.293 1.00 84.19 ATOM 5 CB ARG F 92 190.997 248.677 185.700 1.00 84.19 ATOM 6 CG ARG F 92 189.597 248.094 185.801 1.00 84.19 ATOM 7 CD ARG F 92 189.585 246.795 186.591 1.00 84.19 ATOM 8 NE ARG F 92 189.688 247.025 188.029 1.00 84.19 ATOM 9 CZ ARG F 92 189.945 246.076 188.924 1.00 84.19 ATOM 10 NH1 ARG F 92 190.130 244.822 188.536 1.00 84.19 ATOM 11 NH2 ARG F 92 190.018 246.382 190.211 1.00 84.19 ATOM 12 N ILE F 93 191.090 252.095 185.635 1.00 83.72 ATOM 13 CA ILE F 93 190.456 253.305 186.153 1.00 83.72 ATOM 14 C ILE F 93 189.596 253.954 185.076 1.00 83.72 ATOM 15 O ILE F 93 188.471 254.398 185.337 1.00 83.72 ATOM 16 CB ILE F 93 191.520 254.281 186.687 1.00 83.72 ATOM 17 CG1 ILE F 93 192.271 253.656 187.866 1.00 83.72 ATOM 18 CG2 ILE F 93 190.870 255.593 187.103 1.00 83.72 ATOM 19 CD1 ILE F 93 193.554 254.372 188.224 1.00 83.72 ATOM 20 N LEU F 94 190.114 254.023 183.848 1.00 85.11 ATOM 21 CA LEU F 94 189.360 254.636 182.761 1.00 85.11 ATOM 22 C LEU F 94 188.051 253.910 182.490 1.00 85.11 ATOM 23 O LEU F 94 187.036 254.564 182.225 1.00 85.11 ATOM 24 CB LEU F 94 190.207 254.666 181.487 1.00 85.11 ATOM 25 CG LEU F 94 191.456 255.547 181.530 1.00 85.11 ATOM 26 CD1 LEU F 94 192.282 255.351 180.269 1.00 85.11 ATOM 27 CD2 LEU F 94 191.081 257.012 181.705 1.00 85.11 ATOM 28 N GLY F 95 188.049 252.582 182.546 1.00 83.18 ATOM 29 CA GLY F 95 186.827 251.826 182.362 1.00 83.18 ATOM 30 C GLY F 95 185.970 251.825 183.609 1.00 83.18 ATOM 31 O GLY F 95 184.738 251.800 183.527 1.00 83.18 ATOM 32 N THR F 96 186.616 251.854 184.777 1.00 75.86 ATOM 33 CA THR F 96 185.873 251.866 186.032 1.00 75.86 ATOM 34 C THR F 96 185.027 253.127 186.152 1.00 75.86 ATOM 35 O THR F 96 183.832 253.061 186.462 1.00 75.86 ATOM 36 CB THR F 96 186.838 251.752 187.212 1.00 75.86 ATOM 37 OG1 THR F 96 187.391 250.431 187.257 1.00 75.86 ATOM 38 CG2 THR F 96 186.120 252.039 188.521 1.00 75.86 ATOM 39 N ARG F 97 185.632 254.291 185.908 1.00 77.52 ATOM 40 CA ARG F 97 184.879 255.537 185.985 1.00 77.52 ATOM 41 C ARG F 97 183.882 255.659 184.840 1.00 77.52 ATOM 42 O ARG F 97 182.803 256.236 185.020 1.00 77.52 ATOM 43 CB ARG F 97 185.832 256.733 185.988 1.00 77.52 ATOM 44 CG ARG F 97 185.220 258.009 186.552 1.00 77.52 ATOM 45 CD ARG F 97 185.080 257.948 188.067 1.00 77.52 ATOM 46 NE ARG F 97 183.935 258.717 188.546 1.00 77.52 ATOM 47 CZ ARG F 97 183.917 260.040 188.679 1.00 77.52 ATOM 48 NH1 ARG F 97 184.987 260.761 188.368 1.00 77.52 ATOM 49 NH2 ARG F 97 182.826 260.646 189.124 1.00 77.52 ATOM 50 N ALA F 98 184.220 255.131 183.662 1.00 79.50 ATOM 51 CA ALA F 98 183.281 255.162 182.546 1.00 79.50 ATOM 52 C ALA F 98 182.008 254.400 182.889 1.00 79.50 ATOM 53 O ALA F 98 180.897 254.868 182.611 1.00 79.50 ATOM 54 CB ALA F 98 183.938 254.581 181.293 1.00 79.50 ATOM 55 N LEU F 99 182.150 253.220 183.495 1.00 75.92 ATOM 56 CA LEU F 99 180.978 252.482 183.954 1.00 75.92 ATOM 57 C LEU F 99 180.246 253.248 185.047 1.00 75.92 ATOM 58 O LEU F 99 179.011 253.311 185.051 1.00 75.92 ATOM 59 CB LEU F 99 181.396 251.100 184.456 1.00 75.92 ATOM 60 CG LEU F 99 180.283 250.208 185.009 1.00 75.92 ATOM 61 CD1 LEU F 99 179.257 249.880 183.936 1.00 75.92 ATOM 62 CD2 LEU F 99 180.872 248.935 185.593 1.00 75.92 ATOM 63 N GLN F 100 180.991 253.841 185.983 1.00 67.34 ATOM 64 CA GLN F 100 180.359 254.589 187.064 1.00 67.34 ATOM 65 C GLN F 100 179.564 255.770 186.522 1.00 67.34 ATOM 66 O GLN F 100 178.430 256.014 186.950 1.00 67.34 ATOM 67 CB GLN F 100 181.418 255.064 188.057 1.00 67.34 ATOM 68 CG GLN F 100 181.947 253.965 188.962 1.00 67.34 ATOM 69 CD GLN F 100 182.986 254.465 189.943 1.00 67.34 ATOM 70 OE1 GLN F 100 183.255 255.663 190.024 1.00 67.34 ATOM 71 NE2 GLN F 100 183.578 253.547 190.695 1.00 67.34 ATOM 72 N ILE F 101 180.141 256.513 185.577 1.00 73.87 ATOM 73 CA ILE F 101 179.425 257.635 184.979 1.00 73.87 ATOM 74 C ILE F 101 178.190 257.140 184.237 1.00 73.87 ATOM 75 O ILE F 101 177.112 257.740 184.330 1.00 73.87 ATOM 76 CB ILE F 101 180.361 258.431 184.052 1.00 73.87 ATOM 77 CG1 ILE F 101 181.485 259.082 184.861 1.00 73.87 ATOM 78 CG2 ILE F 101 179.579 259.491 183.290 1.00 73.87 ATOM 79 CD1 ILE F 101 182.715 259.408 184.040 1.00 73.87 ATOM 80 N SER F 102 178.325 256.042 183.491 1.00 76.01 ATOM 81 CA SER F 102 177.187 255.493 182.763 1.00 76.01 ATOM 82 C SER F 102 176.056 255.077 183.694 1.00 76.01 ATOM 83 O SER F 102 174.903 255.006 183.256 1.00 76.01 ATOM 84 CB SER F 102 177.632 254.295 181.923 1.00 76.01 ATOM 85 OG SER F 102 178.234 254.718 180.711 1.00 76.01 ATOM 86 N MET F 103 176.357 254.804 184.964 1.00 66.91 ATOM 87 CA MET F 103 175.354 254.415 185.948 1.00 66.91 ATOM 88 C MET F 103 174.858 255.606 186.762 1.00 66.91 ATOM 89 O MET F 103 174.482 255.450 187.929 1.00 66.91 ATOM 90 CB MET F 103 175.915 253.332 186.869 1.00 66.91 ATOM 91 CG MET F 103 176.226 252.027 186.155 1.00 66.91 ATOM 92 SD MET F 103 176.991 250.798 187.227 1.00 66.91 ATOM 93 CE MET F 103 175.749 249.507 187.201 1.00 66.91 ATOM 94 N ASN F 104 174.853 256.797 186.165 1.00 64.67 ATOM 95 CA ASN F 104 174.322 257.999 186.806 1.00 64.67 ATOM 96 C ASN F 104 175.105 258.341 188.073 1.00 64.67 ATOM 97 O ASN F 104 174.539 258.528 189.151 1.00 64.67 ATOM 98 CB ASN F 104 172.831 257.836 187.112 1.00 64.67 ATOM 99 CG ASN F 104 172.181 259.132 187.551 1.00 64.67 ATOM 100 OD1 ASN F 104 172.844 260.161 187.680 1.00 64.67 ATOM 101 ND2 ASN F 104 170.874 259.089 187.784 1.00 64.67 ATOM 102 N ALA F 105 176.426 258.424 187.932 1.00 66.35 ATOM 103 CA ALA F 105 177.268 258.832 189.047 1.00 66.35 ATOM 104 C ALA F 105 177.644 260.302 188.919 1.00 66.35 ATOM 105 O ALA F 105 177.936 260.772 187.813 1.00 66.35 ATOM 106 CB ALA F 105 178.542 257.989 189.105 1.00 66.35 ATOM 107 N PRO F 106 177.649 261.065 190.012 1.00 70.36 ATOM 108 CA PRO F 106 178.010 262.483 189.908 1.00 70.36 ATOM 109 C PRO F 106 179.435 262.656 189.405 1.00 70.36 ATOM 110 O PRO F 106 180.330 261.874 189.732 1.00 70.36 ATOM 111 CB PRO F 106 177.846 262.998 191.342 1.00 70.36 ATOM 112 CG PRO F 106 177.999 261.793 192.194 1.00 70.36 ATOM 113 CD PRO F 106 177.407 260.664 191.408 1.00 70.36 ATOM 114 N VAL F 107 179.638 263.697 188.602 1.00 82.69 ATOM 115 CA VAL F 107 180.938 264.016 188.025 1.00 82.69 ATOM 116 C VAL F 107 181.443 265.306 188.653 1.00 82.69 ATOM 117 O VAL F 107 180.725 266.312 188.699 1.00 82.69 ATOM 118 CB VAL F 107 180.861 264.139 186.489 1.00 82.69 ATOM 119 CG1 VAL F 107 180.072 265.378 186.084 1.00 82.69 ATOM 120 CG2 VAL F 107 182.259 264.169 185.889 1.00 82.69 ATOM 121 N PHE F 108 182.678 265.272 189.145 1.00 85.61 ATOM 122 CA PHE F 108 183.283 266.430 189.794 1.00 85.61 ATOM 123 C PHE F 108 184.344 267.055 188.895 1.00 85.61 ATOM 124 O PHE F 108 184.047 267.934 188.087 1.00 85.61 ATOM 125 CB PHE F 108 183.899 266.030 191.137 1.00 85.61 ATOM 126 CG PHE F 108 182.928 265.382 192.086 1.00 85.61 ATOM 127 CD1 PHE F 108 181.567 265.627 191.992 1.00 85.61 ATOM 128 CD2 PHE F 108 183.380 264.521 193.073 1.00 85.61 ATOM 129 CE1 PHE F 108 180.678 265.029 192.866 1.00 85.61 ATOM 130 CE2 PHE F 108 182.495 263.921 193.948 1.00 85.61 ATOM 131 CZ PHE F 108 181.143 264.175 193.844 1.00 85.61 TER ATOM 1 N ILE F 130 188.416 261.824 189.702 1.00 80.68 ATOM 2 CA ILE F 130 188.358 260.377 189.857 1.00 80.68 ATOM 3 C ILE F 130 188.805 259.998 191.266 1.00 80.68 ATOM 4 O ILE F 130 189.984 259.727 191.492 1.00 80.68 ATOM 5 CB ILE F 130 189.221 259.668 188.799 1.00 80.68 ATOM 6 CG1 ILE F 130 188.676 259.950 187.396 1.00 80.68 ATOM 7 CG2 ILE F 130 189.255 258.167 189.063 1.00 80.68 ATOM 8 CD1 ILE F 130 189.607 259.529 186.276 1.00 80.68 ATOM 9 N PRO F 131 187.868 259.983 192.220 1.00 79.46 ATOM 10 CA PRO F 131 188.218 259.639 193.611 1.00 79.46 ATOM 11 C PRO F 131 188.412 258.139 193.810 1.00 79.46 ATOM 12 O PRO F 131 187.657 257.471 194.522 1.00 79.46 ATOM 13 CB PRO F 131 187.020 260.192 194.394 1.00 79.46 ATOM 14 CG PRO F 131 185.880 260.098 193.452 1.00 79.46 ATOM 15 CD PRO F 131 186.439 260.316 192.075 1.00 79.46 ATOM 16 N LEU F 132 189.446 257.597 193.170 1.00 76.39 ATOM 17 CA LEU F 132 189.782 256.186 193.269 1.00 76.39 ATOM 18 C LEU F 132 191.266 256.038 193.566 1.00 76.39 ATOM 19 O LEU F 132 192.087 256.848 193.127 1.00 76.39 ATOM 20 CB LEU F 132 189.434 255.432 191.978 1.00 76.39 ATOM 21 CG LEU F 132 188.023 255.651 191.429 1.00 76.39 ATOM 22 CD1 LEU F 132 187.897 255.058 190.037 1.00 76.39 ATOM 23 CD2 LEU F 132 186.985 255.053 192.363 1.00 76.39 ATOM 24 N VAL F 133 191.602 254.995 194.321 1.00 78.78 ATOM 25 CA VAL F 133 192.979 254.687 194.684 1.00 78.78 ATOM 26 C VAL F 133 193.294 253.271 194.225 1.00 78.78 ATOM 27 O VAL F 133 192.508 252.345 194.452 1.00 78.78 ATOM 28 CB VAL F 133 193.225 254.837 196.201 1.00 78.78 ATOM 29 CG1 VAL F 133 192.887 256.247 196.662 1.00 78.78 ATOM 30 CG2 VAL F 133 192.420 253.811 196.979 1.00 78.78 ATOM 31 N ILE F 134 194.443 253.108 193.577 1.00 91.26 ATOM 32 CA ILE F 134 194.856 251.808 193.061 1.00 91.26 ATOM 33 C ILE F 134 195.487 251.014 194.197 1.00 91.26 ATOM 34 O ILE F 134 196.477 251.448 194.796 1.00 91.26 ATOM 35 CB ILE F 134 195.837 251.960 191.889 1.00 91.26 ATOM 36 CG1 ILE F 134 195.309 252.966 190.861 1.00 91.26 ATOM 37 CG2 ILE F 134 196.082 250.611 191.225 1.00 91.26 ATOM 38 CD1 ILE F 134 196.322 253.329 189.795 1.00 91.26 ATOM 39 N ARG F 135 194.915 249.848 194.496 1.00 85.78 ATOM 40 CA ARG F 135 195.464 248.956 195.517 1.00 85.78 ATOM 41 C ARG F 135 196.438 247.979 194.856 1.00 85.78 ATOM 42 O ARG F 135 196.164 246.793 194.665 1.00 85.78 ATOM 43 CB ARG F 135 194.343 248.231 196.251 1.00 85.78 ATOM 44 CG ARG F 135 194.831 247.206 197.262 1.00 85.78 ATOM 45 CD ARG F 135 193.789 246.937 198.333 1.00 85.78 ATOM 46 NE ARG F 135 193.645 248.065 199.249 1.00 85.78 ATOM 47 CZ ARG F 135 193.060 247.996 200.440 1.00 85.78 ATOM 48 NH1 ARG F 135 192.555 246.849 200.874 1.00 85.78 ATOM 49 NH2 ARG F 135 192.979 249.078 201.201 1.00 85.78 ATOM 50 N ARG F 136 197.601 248.514 194.501 1.00 98.33 ATOM 51 CA ARG F 136 198.632 247.735 193.828 1.00 98.33 ATOM 52 C ARG F 136 199.204 246.673 194.761 1.00 98.33 ATOM 53 O ARG F 136 199.596 246.971 195.889 1.00 98.33 ATOM 54 CB ARG F 136 199.751 248.650 193.324 1.00 98.33 ATOM 55 CG ARG F 136 199.268 249.822 192.482 1.00 98.33 ATOM 56 CD ARG F 136 200.401 250.785 192.167 1.00 98.33 ATOM 57 NE ARG F 136 199.961 251.893 191.324 1.00 98.33 ATOM 58 CZ ARG F 136 200.676 252.990 191.093 1.00 98.33 ATOM 59 NH1 ARG F 136 201.875 253.137 191.643 1.00 98.33 ATOM 60 NH2 ARG F 136 200.191 253.944 190.311 1.00 98.33 ATOM 61 N GLU F 144 200.105 248.308 198.980 1.00106.57 ATOM 62 CA GLU F 144 200.292 249.754 198.945 1.00106.57 ATOM 63 C GLU F 144 199.184 250.423 198.140 1.00106.57 ATOM 64 O GLU F 144 198.956 250.085 196.979 1.00106.57 ATOM 65 CB GLU F 144 201.660 250.103 198.354 1.00106.57 ATOM 66 CG GLU F 144 201.886 249.569 196.948 1.00106.57 ATOM 67 CD GLU F 144 203.321 249.728 196.487 1.00106.57 ATOM 68 OE1 GLU F 144 204.054 250.539 197.091 1.00106.57 ATOM 69 OE2 GLU F 144 203.716 249.042 195.522 1.00106.57 ATOM 70 N ASP F 145 198.495 251.374 198.768 1.00 98.65 ATOM 71 CA ASP F 145 197.407 252.098 198.126 1.00 98.65 ATOM 72 C ASP F 145 197.883 253.487 197.723 1.00 98.65 ATOM 73 O ASP F 145 198.492 254.200 198.527 1.00 98.65 ATOM 74 CB ASP F 145 196.204 252.203 199.064 1.00 98.65 ATOM 75 CG ASP F 145 195.618 250.849 199.414 1.00 98.65 ATOM 76 OD1 ASP F 145 195.735 249.918 198.590 1.00 98.65 ATOM 77 OD2 ASP F 145 195.041 250.716 200.513 1.00 98.65 ATOM 78 N TRP F 146 197.605 253.867 196.477 1.00101.37 ATOM 79 CA TRP F 146 197.981 255.169 195.948 1.00101.37 ATOM 80 C TRP F 146 196.793 255.790 195.231 1.00101.37 ATOM 81 O TRP F 146 195.998 255.085 194.602 1.00101.37 ATOM 82 CB TRP F 146 199.171 255.059 194.987 1.00101.37 ATOM 83 CG TRP F 146 200.454 254.685 195.662 1.00101.37 ATOM 84 CD1 TRP F 146 200.978 253.431 195.790 1.00101.37 ATOM 85 CD2 TRP F 146 201.375 255.573 196.306 1.00101.37 ATOM 86 NE1 TRP F 146 202.170 253.484 196.473 1.00101.37 ATOM 87 CE2 TRP F 146 202.436 254.788 196.800 1.00101.37 ATOM 88 CE3 TRP F 146 201.407 256.956 196.511 1.00101.37 ATOM 89 CZ2 TRP F 146 203.516 255.339 197.487 1.00101.37 ATOM 90 CZ3 TRP F 146 202.480 257.501 197.193 1.00101.37 ATOM 91 CH2 TRP F 146 203.519 256.694 197.672 1.00101.37 ATOM 92 N SER F 147 196.680 257.111 195.327 1.00 93.19 ATOM 93 CA SER F 147 195.592 257.838 194.684 1.00 93.19 ATOM 94 C SER F 147 196.000 258.297 193.289 1.00 93.19 ATOM 95 O SER F 147 195.424 257.866 192.290 1.00 93.19 ATOM 96 CB SER F 147 195.176 259.041 195.534 1.00 93.19 ATOM 97 OG SER F 147 196.252 259.948 195.695 1.00 93.19 TER