HEADER RIBOSOME 31-DEC-69 7OYB TITLE Cryo-EM structure of the 6 hpf zebrafish embryo 80S ribosome COMPND MOL_ID: 74; COMPND 2 MOLECULE: Rpl41; COMPND 3 CHAIN: n1; EXPDTA ELECTRON MICROSCOPY DBREF 7OYB n 1 25 PDB 7OYB 7OYB 1 25 SEQRES 1 n1 24 ARG ALA LYS TRP ARG LYS LYS ARG MET ARG ARG LEU LYS SEQRES 2 n1 24 ARG LYS ARG ARG LYS MET ARG GLN ARG SER LYS ATOM 1 N ARG n 2 241.878 274.681 302.270 1.00 38.39 ATOM 2 CA ARG n 2 241.362 273.325 302.405 1.00 38.39 ATOM 3 C ARG n 2 242.498 272.313 302.373 1.00 38.39 ATOM 4 O ARG n 2 243.107 272.086 301.330 1.00 38.39 ATOM 5 CB ARG n 2 240.357 273.019 301.295 1.00 38.39 ATOM 6 CG ARG n 2 239.553 271.753 301.516 1.00 38.39 ATOM 7 CD ARG n 2 238.562 271.933 302.645 1.00 38.39 ATOM 8 NE ARG n 2 237.665 270.790 302.776 1.00 38.39 ATOM 9 CZ ARG n 2 236.516 270.667 302.122 1.00 38.39 ATOM 10 NH1 ARG n 2 235.758 269.595 302.302 1.00 38.39 ATOM 11 NH2 ARG n 2 236.124 271.618 301.286 1.00 38.39 ATOM 12 N ALA n 3 242.781 271.705 303.527 1.00 37.44 ATOM 13 CA ALA n 3 243.860 270.729 303.610 1.00 37.44 ATOM 14 C ALA n 3 243.532 269.434 302.880 1.00 37.44 ATOM 15 O ALA n 3 244.447 268.664 302.574 1.00 37.44 ATOM 16 CB ALA n 3 244.190 270.430 305.072 1.00 37.44 ATOM 17 N LYS n 4 242.253 269.175 302.597 1.00 36.97 ATOM 18 CA LYS n 4 241.896 267.946 301.897 1.00 36.97 ATOM 19 C LYS n 4 242.321 267.987 300.435 1.00 36.97 ATOM 20 O LYS n 4 242.668 266.947 299.865 1.00 36.97 ATOM 21 CB LYS n 4 240.394 267.691 302.005 1.00 36.97 ATOM 22 CG LYS n 4 239.955 266.356 301.428 1.00 36.97 ATOM 23 CD LYS n 4 238.510 266.041 301.777 1.00 36.97 ATOM 24 CE LYS n 4 237.557 267.037 301.148 1.00 36.97 ATOM 25 NZ LYS n 4 236.142 266.700 301.458 1.00 36.97 ATOM 26 N TRP n 5 242.312 269.166 299.814 1.00 38.56 ATOM 27 CA TRP n 5 242.744 269.273 298.428 1.00 38.56 ATOM 28 C TRP n 5 244.257 269.355 298.289 1.00 38.56 ATOM 29 O TRP n 5 244.776 269.130 297.190 1.00 38.56 ATOM 30 CB TRP n 5 242.094 270.483 297.750 1.00 38.56 ATOM 31 CG TRP n 5 240.590 270.561 297.896 1.00 38.56 ATOM 32 CD1 TRP n 5 239.860 271.678 298.166 1.00 38.56 ATOM 33 CD2 TRP n 5 239.642 269.485 297.779 1.00 38.56 ATOM 34 NE1 TRP n 5 238.524 271.373 298.226 1.00 38.56 ATOM 35 CE2 TRP n 5 238.363 270.034 297.991 1.00 38.56 ATOM 36 CE3 TRP n 5 239.750 268.116 297.512 1.00 38.56 ATOM 37 CZ2 TRP n 5 237.204 269.265 297.950 1.00 38.56 ATOM 38 CZ3 TRP n 5 238.597 267.355 297.473 1.00 38.56 ATOM 39 CH2 TRP n 5 237.342 267.931 297.691 1.00 38.56 ATOM 40 N ARG n 6 244.975 269.678 299.368 1.00 37.95 ATOM 41 CA ARG n 6 246.415 269.450 299.375 1.00 37.95 ATOM 42 C ARG n 6 246.724 267.961 299.394 1.00 37.95 ATOM 43 O ARG n 6 247.769 267.536 298.888 1.00 37.95 ATOM 44 CB ARG n 6 247.065 270.139 300.576 1.00 37.95 ATOM 45 CG ARG n 6 247.402 271.608 300.368 1.00 37.95 ATOM 46 CD ARG n 6 246.164 272.484 300.425 1.00 37.95 ATOM 47 NE ARG n 6 246.493 273.903 300.331 1.00 37.95 ATOM 48 CZ ARG n 6 245.596 274.881 300.389 1.00 37.95 ATOM 49 NH1 ARG n 6 244.311 274.596 300.541 1.00 37.95 ATOM 50 NH2 ARG n 6 245.985 276.145 300.296 1.00 37.95 ATOM 51 N LYS n 7 245.828 267.160 299.972 1.00 35.30 ATOM 52 CA LYS n 7 245.946 265.710 299.908 1.00 35.30 ATOM 53 C LYS n 7 245.432 265.170 298.581 1.00 35.30 ATOM 54 O LYS n 7 245.892 264.119 298.122 1.00 35.30 ATOM 55 CB LYS n 7 245.183 265.078 301.073 1.00 35.30 ATOM 56 CG LYS n 7 245.405 263.590 301.257 1.00 35.30 ATOM 57 CD LYS n 7 244.613 263.080 302.449 1.00 35.30 ATOM 58 CE LYS n 7 244.884 261.612 302.714 1.00 35.30 ATOM 59 NZ LYS n 7 244.086 261.102 303.861 1.00 35.30 ATOM 60 N LYS n 8 244.486 265.874 297.956 1.00 36.27 ATOM 61 CA LYS n 8 244.001 265.470 296.641 1.00 36.27 ATOM 62 C LYS n 8 245.061 265.702 295.572 1.00 36.27 ATOM 63 O LYS n 8 245.262 264.855 294.695 1.00 36.27 ATOM 64 CB LYS n 8 242.721 266.236 296.304 1.00 36.27 ATOM 65 CG LYS n 8 241.958 265.708 295.103 1.00 36.27 ATOM 66 CD LYS n 8 241.171 264.460 295.458 1.00 36.27 ATOM 67 CE LYS n 8 240.242 264.058 294.328 1.00 36.27 ATOM 68 NZ LYS n 8 239.425 262.865 294.681 1.00 36.27 ATOM 69 N ARG n 9 245.748 266.845 295.631 1.00 37.96 ATOM 70 CA ARG n 9 246.818 267.127 294.682 1.00 37.96 ATOM 71 C ARG n 9 248.064 266.300 294.957 1.00 37.96 ATOM 72 O ARG n 9 248.848 266.058 294.033 1.00 37.96 ATOM 73 CB ARG n 9 247.169 268.615 294.712 1.00 37.96 ATOM 74 CG ARG n 9 246.077 269.523 294.179 1.00 37.96 ATOM 75 CD ARG n 9 246.381 270.979 294.482 1.00 37.96 ATOM 76 NE ARG n 9 247.728 271.355 294.065 1.00 37.96 ATOM 77 CZ ARG n 9 248.233 272.577 294.191 1.00 37.96 ATOM 78 NH1 ARG n 9 249.470 272.831 293.785 1.00 37.96 ATOM 79 NH2 ARG n 9 247.502 273.547 294.722 1.00 37.96 ATOM 80 N MET n 10 248.268 265.866 296.201 1.00 37.89 ATOM 81 CA MET n 10 249.436 265.054 296.517 1.00 37.89 ATOM 82 C MET n 10 249.272 263.627 296.011 1.00 37.89 ATOM 83 O MET n 10 250.208 263.057 295.439 1.00 37.89 ATOM 84 CB MET n 10 249.686 265.063 298.024 1.00 37.89 ATOM 85 CG MET n 10 251.027 264.489 298.441 1.00 37.89 ATOM 86 SD MET n 10 252.431 265.495 297.919 1.00 37.89 ATOM 87 CE MET n 10 253.017 264.576 296.498 1.00 37.89 ATOM 88 N ARG n 11 248.093 263.034 296.214 1.00 36.27 ATOM 89 CA ARG n 11 247.821 261.720 295.644 1.00 36.27 ATOM 90 C ARG n 11 247.810 261.769 294.124 1.00 36.27 ATOM 91 O ARG n 11 248.078 260.757 293.466 1.00 36.27 ATOM 92 CB ARG n 11 246.489 261.187 296.171 1.00 36.27 ATOM 93 CG ARG n 11 246.506 260.823 297.644 1.00 36.27 ATOM 94 CD ARG n 11 245.099 260.767 298.212 1.00 36.27 ATOM 95 NE ARG n 11 245.085 260.275 299.586 1.00 36.27 ATOM 96 CZ ARG n 11 244.676 259.062 299.938 1.00 36.27 ATOM 97 NH1 ARG n 11 244.237 258.216 299.017 1.00 36.27 ATOM 98 NH2 ARG n 11 244.700 258.694 301.211 1.00 36.27 ATOM 99 N ARG n 12 247.500 262.932 293.550 1.00 38.46 ATOM 100 CA ARG n 12 247.539 263.098 292.104 1.00 38.46 ATOM 101 C ARG n 12 248.966 263.244 291.592 1.00 38.46 ATOM 102 O ARG n 12 249.256 262.856 290.455 1.00 38.46 ATOM 103 CB ARG n 12 246.703 264.314 291.702 1.00 38.46 ATOM 104 CG ARG n 12 246.457 264.461 290.213 1.00 38.46 ATOM 105 CD ARG n 12 245.593 265.680 289.935 1.00 38.46 ATOM 106 NE ARG n 12 244.363 265.661 290.722 1.00 38.46 ATOM 107 CZ ARG n 12 243.481 266.654 290.755 1.00 38.46 ATOM 108 NH1 ARG n 12 243.689 267.754 290.044 1.00 38.46 ATOM 109 NH2 ARG n 12 242.389 266.549 291.501 1.00 38.46 ATOM 110 N LEU n 13 249.864 263.795 292.411 1.00 37.89 ATOM 111 CA LEU n 13 251.261 263.920 292.014 1.00 37.89 ATOM 112 C LEU n 13 252.019 262.616 292.225 1.00 37.89 ATOM 113 O LEU n 13 252.883 262.260 291.417 1.00 37.89 ATOM 114 CB LEU n 13 251.925 265.056 292.790 1.00 37.89 ATOM 115 CG LEU n 13 253.413 265.290 292.526 1.00 37.89 ATOM 116 CD1 LEU n 13 253.659 265.551 291.050 1.00 37.89 ATOM 117 CD2 LEU n 13 253.925 266.445 293.368 1.00 37.89 ATOM 118 N LYS n 14 251.713 261.894 293.307 1.00 36.73 ATOM 119 CA LYS n 14 252.332 260.591 293.524 1.00 36.73 ATOM 120 C LYS n 14 251.937 259.608 292.431 1.00 36.73 ATOM 121 O LYS n 14 252.752 258.786 291.999 1.00 36.73 ATOM 122 CB LYS n 14 251.941 260.042 294.896 1.00 36.73 ATOM 123 CG LYS n 14 252.520 260.805 296.071 1.00 36.73 ATOM 124 CD LYS n 14 251.958 260.288 297.384 1.00 36.73 ATOM 125 CE LYS n 14 252.136 258.784 297.506 1.00 36.73 ATOM 126 NZ LYS n 14 253.567 258.383 297.420 1.00 36.73 ATOM 127 N ARG n 15 250.685 259.678 291.974 1.00 37.57 ATOM 128 CA ARG n 15 250.222 258.776 290.926 1.00 37.57 ATOM 129 C ARG n 15 250.931 259.044 289.606 1.00 37.57 ATOM 130 O ARG n 15 251.145 258.115 288.819 1.00 37.57 ATOM 131 CB ARG n 15 248.708 258.908 290.767 1.00 37.57 ATOM 132 CG ARG n 15 248.081 257.945 289.780 1.00 37.57 ATOM 133 CD ARG n 15 246.581 257.870 289.996 1.00 37.57 ATOM 134 NE ARG n 15 245.988 259.197 290.135 1.00 37.57 ATOM 135 CZ ARG n 15 244.713 259.417 290.435 1.00 37.57 ATOM 136 NH1 ARG n 15 243.890 258.397 290.630 1.00 37.57 ATOM 137 NH2 ARG n 15 244.260 260.659 290.542 1.00 37.57 ATOM 138 N LYS n 16 251.309 260.296 289.350 1.00 38.30 ATOM 139 CA LYS n 16 252.075 260.613 288.151 1.00 38.30 ATOM 140 C LYS n 16 253.528 260.175 288.277 1.00 38.30 ATOM 141 O LYS n 16 254.133 259.757 287.283 1.00 38.30 ATOM 142 CB LYS n 16 251.997 262.112 287.860 1.00 38.30 ATOM 143 CG LYS n 16 252.710 262.542 286.589 1.00 38.30 ATOM 144 CD LYS n 16 252.510 264.024 286.318 1.00 38.30 ATOM 145 CE LYS n 16 253.040 264.870 287.463 1.00 38.30 ATOM 146 NZ LYS n 16 252.834 266.325 287.222 1.00 38.30 ATOM 147 N ARG n 17 254.101 260.257 289.480 1.00 36.85 ATOM 148 CA ARG n 17 255.476 259.813 289.677 1.00 36.85 ATOM 149 C ARG n 17 255.611 258.305 289.512 1.00 36.85 ATOM 150 O ARG n 17 256.683 257.819 289.139 1.00 36.85 ATOM 151 CB ARG n 17 255.974 260.241 291.056 1.00 36.85 ATOM 152 CG ARG n 17 256.130 261.741 291.219 1.00 36.85 ATOM 153 CD ARG n 17 256.461 262.105 292.654 1.00 36.85 ATOM 154 NE ARG n 17 256.689 263.537 292.813 1.00 36.85 ATOM 155 CZ ARG n 17 256.874 264.137 293.983 1.00 36.85 ATOM 156 NH1 ARG n 17 256.854 263.428 295.103 1.00 36.85 ATOM 157 NH2 ARG n 17 257.077 265.446 294.036 1.00 36.85 ATOM 158 N ARG n 18 254.544 257.552 289.788 1.00 37.87 ATOM 159 CA ARG n 18 254.594 256.109 289.586 1.00 37.87 ATOM 160 C ARG n 18 254.579 255.751 288.107 1.00 37.87 ATOM 161 O ARG n 18 255.226 254.779 287.701 1.00 37.87 ATOM 162 CB ARG n 18 253.428 255.435 290.310 1.00 37.87 ATOM 163 CG ARG n 18 253.547 255.460 291.823 1.00 37.87 ATOM 164 CD ARG n 18 252.341 254.819 292.488 1.00 37.87 ATOM 165 NE ARG n 18 251.114 255.568 292.236 1.00 37.87 ATOM 166 CZ ARG n 18 249.935 255.273 292.771 1.00 37.87 ATOM 167 NH1 ARG n 18 249.817 254.240 293.594 1.00 37.87 ATOM 168 NH2 ARG n 18 248.871 256.011 292.485 1.00 37.87 ATOM 169 N LYS n 19 253.855 256.518 287.289 1.00 38.04 ATOM 170 CA LYS n 19 253.834 256.250 285.855 1.00 38.04 ATOM 171 C LYS n 19 255.157 256.617 285.196 1.00 38.04 ATOM 172 O LYS n 19 255.584 255.943 284.251 1.00 38.04 ATOM 173 CB LYS n 19 252.680 257.008 285.199 1.00 38.04 ATOM 174 CG LYS n 19 251.318 256.662 285.774 1.00 38.04 ATOM 175 CD LYS n 19 250.234 257.573 285.226 1.00 38.04 ATOM 176 CE LYS n 19 248.899 257.302 285.902 1.00 38.04 ATOM 177 NZ LYS n 19 247.840 258.245 285.447 1.00 38.04 ATOM 178 N MET n 20 255.815 257.675 285.672 1.00 39.82 ATOM 179 CA MET n 20 257.133 258.021 285.150 1.00 39.82 ATOM 180 C MET n 20 258.170 256.978 285.543 1.00 39.82 ATOM 181 O MET n 20 259.054 256.640 284.748 1.00 39.82 ATOM 182 CB MET n 20 257.550 259.402 285.653 1.00 39.82 ATOM 183 CG MET n 20 256.683 260.542 285.156 1.00 39.82 ATOM 184 SD MET n 20 256.929 262.040 286.129 1.00 39.82 ATOM 185 CE MET n 20 258.715 262.075 286.247 1.00 39.82 ATOM 186 N ARG n 21 258.080 256.462 286.768 1.00 37.17 ATOM 187 CA ARG n 21 259.006 255.439 287.230 1.00 37.17 ATOM 188 C ARG n 21 258.702 254.069 286.638 1.00 37.17 ATOM 189 O ARG n 21 259.595 253.216 286.590 1.00 37.17 ATOM 190 CB ARG n 21 258.975 255.371 288.760 1.00 37.17 ATOM 191 CG ARG n 21 260.092 254.558 289.387 1.00 37.17 ATOM 192 CD ARG n 21 259.958 254.530 290.900 1.00 37.17 ATOM 193 NE ARG n 21 260.993 253.714 291.526 1.00 37.17 ATOM 194 CZ ARG n 21 262.187 254.173 291.882 1.00 37.17 ATOM 195 NH1 ARG n 21 263.072 253.364 292.445 1.00 37.17 ATOM 196 NH2 ARG n 21 262.497 255.444 291.671 1.00 37.17 ATOM 197 N GLN n 22 257.471 253.844 286.176 1.00 38.06 ATOM 198 CA GLN n 22 257.112 252.551 285.605 1.00 38.06 ATOM 199 C GLN n 22 257.633 252.389 284.183 1.00 38.06 ATOM 200 O GLN n 22 257.958 251.270 283.772 1.00 38.06 ATOM 201 CB GLN n 22 255.594 252.369 285.630 1.00 38.06 ATOM 202 CG GLN n 22 255.115 250.998 285.177 1.00 38.06 ATOM 203 CD GLN n 22 255.480 249.896 286.154 1.00 38.06 ATOM 204 OE1 GLN n 22 255.776 250.156 287.320 1.00 38.06 ATOM 205 NE2 GLN n 22 255.460 248.656 285.680 1.00 38.06 ATOM 206 N ARG n 23 257.725 253.480 283.423 1.00 37.42 ATOM 207 CA ARG n 23 258.211 253.399 282.052 1.00 37.42 ATOM 208 C ARG n 23 259.728 253.309 281.963 1.00 37.42 ATOM 209 O ARG n 23 260.256 253.123 280.862 1.00 37.42 ATOM 210 CB ARG n 23 257.722 254.603 281.244 1.00 37.42 ATOM 211 CG ARG n 23 258.308 255.931 281.681 1.00 37.42 ATOM 212 CD ARG n 23 257.860 257.048 280.756 1.00 37.42 ATOM 213 NE ARG n 23 258.271 256.806 279.376 1.00 37.42 ATOM 214 CZ ARG n 23 257.940 257.583 278.351 1.00 37.42 ATOM 215 NH1 ARG n 23 258.360 257.287 277.130 1.00 37.42 ATOM 216 NH2 ARG n 23 257.186 258.656 278.546 1.00 37.42 ATOM 217 N SER n 24 260.438 253.435 283.083 1.00 38.88 ATOM 218 CA SER n 24 261.887 253.301 283.111 1.00 38.88 ATOM 219 C SER n 24 262.335 251.894 283.486 1.00 38.88 ATOM 220 O SER n 24 263.527 251.677 283.722 1.00 38.88 ATOM 221 CB SER n 24 262.492 254.319 284.080 1.00 38.88 ATOM 222 OG SER n 24 262.173 255.643 283.692 1.00 38.88 ATOM 223 N LYS n 25 261.410 250.941 283.549 1.00 37.69 ATOM 224 CA LYS n 25 261.740 249.558 283.876 1.00 37.69 ATOM 225 C LYS n 25 262.659 248.942 282.826 1.00 37.69 ATOM 226 O LYS n 25 262.691 247.724 282.654 1.00 37.69 ATOM 227 CB LYS n 25 260.466 248.721 284.010 1.00 37.69 ATOM 228 CG LYS n 25 259.672 248.979 285.280 1.00 37.69 ATOM 229 CD LYS n 25 260.377 248.410 286.499 1.00 37.69 ATOM 230 CE LYS n 25 259.493 248.489 287.733 1.00 37.69 ATOM 231 NZ LYS n 25 260.122 247.834 288.913 1.00 37.69 TER