HEADER MOTOR PROTEIN 31-DEC-69 7QO3 TITLE Structure of the 26S proteasome-Ubp6 complex in the si state (Core TITLE 2 Particle and Lid) COMPND MOL_ID: 23; COMPND 2 MOLECULE: 26S proteasome regulatory subunit RPN5; COMPND 3 CHAIN: P; EXPDTA ELECTRON MICROSCOPY DBREF 7QO3 P 1 445 UNP Q12250 RPN5_YEAST 1 445 SEQRES 1 P 33 SER SER GLN LEU LEU ASN GLU TRP SER HIS ASN VAL ASP SEQRES 2 P 33 GLU LEU LEU GLU HIS ILE GLU THR ILE GLY HIS LEU ILE SEQRES 3 P 33 THR LYS GLU GLU ILE MET HIS ATOM 1 N SER P 408 127.708 329.480 302.350 1.00141.11 ATOM 2 CA SER P 408 126.330 329.755 301.952 1.00141.11 ATOM 3 C SER P 408 125.576 328.428 301.827 1.00141.11 ATOM 4 O SER P 408 124.462 328.268 302.336 1.00141.11 ATOM 5 CB SER P 408 126.322 330.461 300.592 1.00141.11 ATOM 6 OG SER P 408 126.770 331.800 300.642 1.00141.11 ATOM 7 N SER P 409 126.199 327.454 301.149 1.00137.26 ATOM 8 CA SER P 409 125.563 326.167 300.873 1.00137.26 ATOM 9 C SER P 409 125.172 325.431 302.155 1.00137.26 ATOM 10 O SER P 409 124.111 324.800 302.218 1.00137.26 ATOM 11 CB SER P 409 126.512 325.327 300.011 1.00137.26 ATOM 12 OG SER P 409 127.677 324.959 300.730 1.00137.26 ATOM 13 N GLN P 410 126.012 325.502 303.185 1.00138.54 ATOM 14 CA GLN P 410 125.696 324.894 304.479 1.00138.54 ATOM 15 C GLN P 410 124.385 325.433 305.036 1.00138.54 ATOM 16 O GLN P 410 123.514 324.664 305.461 1.00138.54 ATOM 17 CB GLN P 410 126.865 325.207 305.411 1.00138.54 ATOM 18 CG GLN P 410 128.172 324.517 305.008 1.00138.54 ATOM 19 CD GLN P 410 129.199 324.381 306.132 1.00138.54 ATOM 20 OE1 GLN P 410 129.882 325.369 306.419 1.00138.54 ATOM 21 NE2 GLN P 410 129.269 323.256 306.814 1.00138.54 ATOM 22 N LEU P 411 124.229 326.761 305.042 1.00135.28 ATOM 23 CA LEU P 411 123.022 327.358 305.606 1.00135.28 ATOM 24 C LEU P 411 121.796 326.749 304.969 1.00135.28 ATOM 25 O LEU P 411 120.827 326.375 305.641 1.00135.28 ATOM 26 CB LEU P 411 122.981 328.867 305.360 1.00135.28 ATOM 27 CG LEU P 411 124.039 329.724 306.044 1.00135.28 ATOM 28 CD1 LEU P 411 124.288 331.093 305.382 1.00135.28 ATOM 29 CD2 LEU P 411 123.644 329.858 307.506 1.00135.28 ATOM 30 N LEU P 412 121.834 326.670 303.648 1.00141.12 ATOM 31 CA LEU P 412 120.685 326.279 302.860 1.00141.12 ATOM 32 C LEU P 412 120.376 324.809 303.050 1.00141.12 ATOM 33 O LEU P 412 119.214 324.395 302.961 1.00141.12 ATOM 34 CB LEU P 412 120.984 326.602 301.399 1.00141.12 ATOM 35 CG LEU P 412 120.949 328.102 301.055 1.00141.12 ATOM 36 CD1 LEU P 412 121.452 328.404 299.641 1.00141.12 ATOM 37 CD2 LEU P 412 119.530 328.655 301.242 1.00141.12 ATOM 38 N ASN P 413 121.404 324.018 303.331 1.00134.22 ATOM 39 CA ASN P 413 121.202 322.599 303.564 1.00134.22 ATOM 40 C ASN P 413 120.350 322.372 304.800 1.00134.22 ATOM 41 O ASN P 413 119.459 321.516 304.807 1.00134.22 ATOM 42 CB ASN P 413 122.551 321.910 303.730 1.00134.22 ATOM 43 CG ASN P 413 123.405 321.978 302.478 1.00134.22 ATOM 44 OD1 ASN P 413 122.935 322.369 301.409 1.00134.22 ATOM 45 ND2 ASN P 413 124.672 321.593 302.606 1.00134.22 ATOM 46 N GLU P 414 120.623 323.129 305.859 1.00131.92 ATOM 47 CA GLU P 414 119.903 322.958 307.112 1.00131.92 ATOM 48 C GLU P 414 118.433 323.298 306.952 1.00131.92 ATOM 49 O GLU P 414 117.564 322.623 307.516 1.00131.92 ATOM 50 CB GLU P 414 120.524 323.857 308.175 1.00131.92 ATOM 51 CG GLU P 414 121.998 323.591 308.443 1.00131.92 ATOM 52 CD GLU P 414 122.508 324.307 309.685 1.00131.92 ATOM 53 OE1 GLU P 414 122.358 323.840 310.838 1.00131.92 ATOM 54 OE2 GLU P 414 122.987 325.433 309.485 1.00131.92 ATOM 55 N TRP P 415 118.137 324.357 306.205 1.00135.37 ATOM 56 CA TRP P 415 116.754 324.796 306.117 1.00135.37 ATOM 57 C TRP P 415 115.926 323.832 305.289 1.00135.37 ATOM 58 O TRP P 415 114.715 323.712 305.505 1.00135.37 ATOM 59 CB TRP P 415 116.674 326.203 305.533 1.00135.37 ATOM 60 CG TRP P 415 115.315 326.829 305.743 1.00135.37 ATOM 61 CD1 TRP P 415 114.907 327.556 306.827 1.00135.37 ATOM 62 CD2 TRP P 415 114.184 326.768 304.857 1.00135.37 ATOM 63 NE1 TRP P 415 113.601 327.953 306.668 1.00135.37 ATOM 64 CE2 TRP P 415 113.135 327.484 305.468 1.00135.37 ATOM 65 CE3 TRP P 415 113.959 326.182 303.606 1.00135.37 ATOM 66 CZ2 TRP P 415 111.883 327.631 304.873 1.00135.37 ATOM 67 CZ3 TRP P 415 112.709 326.331 303.016 1.00135.37 ATOM 68 CH2 TRP P 415 111.690 327.048 303.650 1.00135.37 ATOM 69 N SER P 416 116.559 323.130 304.350 1.00129.26 ATOM 70 CA SER P 416 115.842 322.131 303.571 1.00129.26 ATOM 71 C SER P 416 115.511 320.920 304.425 1.00129.26 ATOM 72 O SER P 416 114.419 320.349 304.322 1.00129.26 ATOM 73 CB SER P 416 116.682 321.704 302.370 1.00129.26 ATOM 74 OG SER P 416 116.604 322.640 301.313 1.00129.26 ATOM 75 N HIS P 417 116.457 320.524 305.272 1.00124.18 ATOM 76 CA HIS P 417 116.286 319.354 306.120 1.00124.18 ATOM 77 C HIS P 417 115.144 319.551 307.094 1.00124.18 ATOM 78 O HIS P 417 114.397 318.614 307.402 1.00124.18 ATOM 79 CB HIS P 417 117.557 319.117 306.917 1.00124.18 ATOM 80 CG HIS P 417 118.745 318.739 306.095 1.00124.18 ATOM 81 ND1 HIS P 417 118.657 318.026 304.920 1.00124.18 ATOM 82 CD2 HIS P 417 120.061 318.968 306.300 1.00124.18 ATOM 83 CE1 HIS P 417 119.872 317.835 304.435 1.00124.18 ATOM 84 NE2 HIS P 417 120.741 318.398 305.254 1.00124.18 ATOM 85 N ASN P 418 115.044 320.760 307.636 1.00119.54 ATOM 86 CA ASN P 418 114.015 321.060 308.616 1.00119.54 ATOM 87 C ASN P 418 112.634 320.874 308.025 1.00119.54 ATOM 88 O ASN P 418 111.735 320.336 308.680 1.00119.54 ATOM 89 CB ASN P 418 114.192 322.490 309.110 1.00119.54 ATOM 90 CG ASN P 418 115.426 322.652 309.949 1.00119.54 ATOM 91 OD1 ASN P 418 116.280 321.767 309.993 1.00119.54 ATOM 92 ND2 ASN P 418 115.525 323.777 310.639 1.00119.54 ATOM 93 N VAL P 419 112.446 321.319 306.786 1.00134.93 ATOM 94 CA VAL P 419 111.131 321.217 306.170 1.00134.93 ATOM 95 C VAL P 419 110.769 319.755 305.928 1.00134.93 ATOM 96 O VAL P 419 109.635 319.331 306.179 1.00134.93 ATOM 97 CB VAL P 419 111.085 322.037 304.866 1.00134.93 ATOM 98 CG1 VAL P 419 109.702 321.911 304.216 1.00134.93 ATOM 99 CG2 VAL P 419 111.439 323.515 305.121 1.00134.93 ATOM 100 N ASP P 420 111.728 318.962 305.449 1.00125.43 ATOM 101 CA ASP P 420 111.469 317.560 305.129 1.00125.43 ATOM 102 C ASP P 420 110.945 316.826 306.351 1.00125.43 ATOM 103 O ASP P 420 110.004 316.031 306.261 1.00125.43 ATOM 104 CB ASP P 420 112.783 316.938 304.656 1.00125.43 ATOM 105 CG ASP P 420 113.260 317.478 303.312 1.00125.43 ATOM 106 OD1 ASP P 420 113.638 316.698 302.428 1.00125.43 ATOM 107 OD2 ASP P 420 112.925 318.640 303.008 1.00125.43 ATOM 108 N GLU P 421 111.543 317.094 307.510 1.00118.66 ATOM 109 CA GLU P 421 111.166 316.373 308.715 1.00118.66 ATOM 110 C GLU P 421 109.750 316.692 309.162 1.00118.66 ATOM 111 O GLU P 421 109.106 315.857 309.804 1.00118.66 ATOM 112 CB GLU P 421 112.158 316.685 309.829 1.00118.66 ATOM 113 CG GLU P 421 113.339 315.741 309.829 1.00118.66 ATOM 114 CD GLU P 421 114.433 316.178 310.781 1.00118.66 ATOM 115 OE1 GLU P 421 115.267 317.018 310.382 1.00118.66 ATOM 116 OE2 GLU P 421 114.454 315.685 311.929 1.00118.66 ATOM 117 N LEU P 422 109.240 317.876 308.846 1.00123.41 ATOM 118 CA LEU P 422 107.861 318.152 309.224 1.00123.41 ATOM 119 C LEU P 422 106.919 317.264 308.432 1.00123.41 ATOM 120 O LEU P 422 105.980 316.675 308.980 1.00123.41 ATOM 121 CB LEU P 422 107.530 319.622 308.988 1.00123.41 ATOM 122 CG LEU P 422 108.350 320.697 309.715 1.00123.41 ATOM 123 CD1 LEU P 422 107.828 322.055 309.292 1.00123.41 ATOM 124 CD2 LEU P 422 108.304 320.616 311.225 1.00123.41 ATOM 125 N LEU P 423 107.194 317.139 307.144 1.00125.95 ATOM 126 CA LEU P 423 106.365 316.358 306.245 1.00125.95 ATOM 127 C LEU P 423 106.308 314.898 306.660 1.00125.95 ATOM 128 O LEU P 423 105.263 314.248 306.542 1.00125.95 ATOM 129 CB LEU P 423 106.951 316.520 304.855 1.00125.95 ATOM 130 CG LEU P 423 106.834 317.945 304.351 1.00125.95 ATOM 131 CD1 LEU P 423 107.651 318.095 303.113 1.00125.95 ATOM 132 CD2 LEU P 423 105.440 318.218 304.057 1.00125.95 ATOM 133 N GLU P 424 107.426 314.363 307.146 1.00109.35 ATOM 134 CA GLU P 424 107.448 312.970 307.565 1.00109.35 ATOM 135 C GLU P 424 106.537 312.744 308.759 1.00109.35 ATOM 136 O GLU P 424 105.779 311.768 308.795 1.00109.35 ATOM 137 CB GLU P 424 108.877 312.547 307.896 1.00109.35 ATOM 138 CG GLU P 424 109.868 312.863 306.784 1.00109.35 ATOM 139 CD GLU P 424 111.303 312.521 307.134 1.00109.35 ATOM 140 OE1 GLU P 424 112.197 313.325 306.793 1.00109.35 ATOM 141 OE2 GLU P 424 111.541 311.452 307.736 1.00109.35 ATOM 142 N HIS P 425 106.589 313.636 309.748 1.00108.50 ATOM 143 CA HIS P 425 105.796 313.408 310.949 1.00108.50 ATOM 144 C HIS P 425 104.313 313.436 310.626 1.00108.50 ATOM 145 O HIS P 425 103.554 312.544 311.023 1.00108.50 ATOM 146 CB HIS P 425 106.065 314.459 312.023 1.00108.50 ATOM 147 CG HIS P 425 107.338 314.266 312.791 1.00108.50 ATOM 148 ND1 HIS P 425 108.482 314.997 312.549 1.00108.50 ATOM 149 CD2 HIS P 425 107.647 313.407 313.789 1.00108.50 ATOM 150 CE1 HIS P 425 109.428 314.621 313.392 1.00108.50 ATOM 151 NE2 HIS P 425 108.950 313.650 314.148 1.00108.50 ATOM 152 N ILE P 426 103.880 314.487 309.931 1.00122.54 ATOM 153 CA ILE P 426 102.459 314.688 309.683 1.00122.54 ATOM 154 C ILE P 426 101.917 313.515 308.889 1.00122.54 ATOM 155 O ILE P 426 100.805 313.029 309.134 1.00122.54 ATOM 156 CB ILE P 426 102.240 316.023 308.946 1.00122.54 ATOM 157 CG1 ILE P 426 102.521 317.209 309.878 1.00122.54 ATOM 158 CG2 ILE P 426 100.793 316.123 308.428 1.00122.54 ATOM 159 CD1 ILE P 426 102.700 318.572 309.160 1.00122.54 ATOM 160 N GLU P 427 102.708 313.037 307.931 1.00123.21 ATOM 161 CA GLU P 427 102.332 311.876 307.137 1.00123.21 ATOM 162 C GLU P 427 102.006 310.686 308.033 1.00123.21 ATOM 163 O GLU P 427 100.953 310.055 307.888 1.00123.21 ATOM 164 CB GLU P 427 103.473 311.562 306.162 1.00123.21 ATOM 165 CG GLU P 427 103.410 310.226 305.417 1.00123.21 ATOM 166 CD GLU P 427 104.452 310.150 304.292 1.00123.21 ATOM 167 OE1 GLU P 427 104.480 310.991 303.367 1.00123.21 ATOM 168 OE2 GLU P 427 105.348 309.300 304.416 1.00123.21 ATOM 169 N THR P 428 102.879 310.387 308.997 1.00113.81 ATOM 170 CA THR P 428 102.650 309.214 309.831 1.00113.81 ATOM 171 C THR P 428 101.479 309.453 310.771 1.00113.81 ATOM 172 O THR P 428 100.656 308.559 311.001 1.00113.81 ATOM 173 CB THR P 428 103.892 308.878 310.646 1.00113.81 ATOM 174 OG1 THR P 428 105.026 308.742 309.787 1.00113.81 ATOM 175 CG2 THR P 428 103.699 307.530 311.354 1.00113.81 ATOM 176 N ILE P 429 101.403 310.662 311.328 1.00108.62 ATOM 177 CA ILE P 429 100.310 311.023 312.222 1.00108.62 ATOM 178 C ILE P 429 98.979 310.806 311.534 1.00108.62 ATOM 179 O ILE P 429 98.018 310.308 312.135 1.00108.62 ATOM 180 CB ILE P 429 100.472 312.485 312.672 1.00108.62 ATOM 181 CG1 ILE P 429 101.689 312.601 313.579 1.00108.62 ATOM 182 CG2 ILE P 429 99.218 312.993 313.387 1.00108.62 ATOM 183 CD1 ILE P 429 102.212 314.013 313.752 1.00108.62 ATOM 184 N GLY P 430 98.902 311.192 310.264 1.00118.70 ATOM 185 CA GLY P 430 97.644 311.114 309.551 1.00118.70 ATOM 186 C GLY P 430 97.108 309.700 309.469 1.00118.70 ATOM 187 O GLY P 430 95.897 309.480 309.532 1.00118.70 ATOM 188 N HIS P 431 97.997 308.720 309.332 1.00117.09 ATOM 189 CA HIS P 431 97.537 307.343 309.285 1.00117.09 ATOM 190 C HIS P 431 97.129 306.844 310.663 1.00117.09 ATOM 191 O HIS P 431 96.338 305.901 310.762 1.00117.09 ATOM 192 CB HIS P 431 98.626 306.440 308.698 1.00117.09 ATOM 193 CG HIS P 431 99.125 306.870 307.348 1.00117.09 ATOM 194 ND1 HIS P 431 98.307 306.990 306.244 1.00117.09 ATOM 195 CD2 HIS P 431 100.369 307.203 306.930 1.00117.09 ATOM 196 CE1 HIS P 431 99.028 307.373 305.203 1.00117.09 ATOM 197 NE2 HIS P 431 100.281 307.512 305.594 1.00117.09 ATOM 198 N LEU P 432 97.635 307.473 311.721 1.00103.97 ATOM 199 CA LEU P 432 97.379 307.042 313.085 1.00103.97 ATOM 200 C LEU P 432 96.115 307.630 313.695 1.00103.97 ATOM 201 O LEU P 432 95.649 307.120 314.720 1.00103.97 ATOM 202 CB LEU P 432 98.580 307.408 313.951 1.00103.97 ATOM 203 CG LEU P 432 99.779 306.484 313.716 1.00103.97 ATOM 204 CD1 LEU P 432 101.072 307.156 314.186 1.00103.97 ATOM 205 CD2 LEU P 432 99.568 305.090 314.350 1.00103.97 ATOM 206 N ILE P 433 95.552 308.684 313.105 1.00111.11 ATOM 207 CA ILE P 433 94.283 309.218 313.595 1.00111.11 ATOM 208 C ILE P 433 93.177 308.195 313.388 1.00111.11 ATOM 209 O ILE P 433 92.338 307.970 314.270 1.00111.11 ATOM 210 CB ILE P 433 93.972 310.559 312.897 1.00111.11 ATOM 211 CG1 ILE P 433 94.982 311.609 313.387 1.00111.11 ATOM 212 CG2 ILE P 433 92.483 310.968 313.117 1.00111.11 ATOM 213 CD1 ILE P 433 94.894 313.014 312.757 1.00111.11 ATOM 214 N THR P 434 93.181 307.540 312.228 1.00118.69 ATOM 215 CA THR P 434 92.165 306.543 311.909 1.00118.69 ATOM 216 C THR P 434 92.138 305.431 312.945 1.00118.69 ATOM 217 O THR P 434 91.068 304.963 313.351 1.00118.69 ATOM 218 CB THR P 434 92.454 305.952 310.529 1.00118.69 ATOM 219 OG1 THR P 434 92.538 306.994 309.549 1.00118.69 ATOM 220 CG2 THR P 434 91.376 304.966 310.135 1.00118.69 ATOM 221 N LYS P 435 93.319 304.977 313.348 1.00106.43 ATOM 222 CA LYS P 435 93.451 303.940 314.359 1.00106.43 ATOM 223 C LYS P 435 92.826 304.346 315.680 1.00106.43 ATOM 224 O LYS P 435 92.209 303.519 316.360 1.00106.43 ATOM 225 CB LYS P 435 94.945 303.621 314.488 1.00106.43 ATOM 226 CG LYS P 435 95.486 303.650 315.895 1.00106.43 ATOM 227 CD LYS P 435 96.897 303.084 316.041 1.00106.43 ATOM 228 CE LYS P 435 97.572 303.605 317.295 1.00106.43 ATOM 229 NZ LYS P 435 98.862 302.882 317.548 1.00106.43 ATOM 230 N GLU P 436 92.947 305.616 316.038 1.00114.01 ATOM 231 CA GLU P 436 92.475 306.085 317.328 1.00114.01 ATOM 232 C GLU P 436 90.955 306.165 317.409 1.00114.01 ATOM 233 O GLU P 436 90.410 306.151 318.518 1.00114.01 ATOM 234 CB GLU P 436 93.090 307.459 317.613 1.00114.01 ATOM 235 CG GLU P 436 94.517 307.449 318.171 1.00114.01 ATOM 236 CD GLU P 436 94.670 306.530 319.369 1.00114.01 ATOM 237 OE1 GLU P 436 93.989 306.770 320.388 1.00114.01 ATOM 238 OE2 GLU P 436 95.478 305.581 319.299 1.00114.01 ATOM 239 N GLU P 437 90.254 306.254 316.274 1.00120.01 ATOM 240 CA GLU P 437 88.794 306.251 316.334 1.00120.01 ATOM 241 C GLU P 437 88.303 304.852 316.640 1.00120.01 ATOM 242 O GLU P 437 87.321 304.662 317.367 1.00120.01 ATOM 243 CB GLU P 437 88.181 306.731 315.015 1.00120.01 ATOM 244 CG GLU P 437 88.627 308.127 314.660 1.00120.01 ATOM 245 CD GLU P 437 87.951 309.217 315.468 1.00120.01 ATOM 246 OE1 GLU P 437 88.607 310.253 315.688 1.00120.01 ATOM 247 OE2 GLU P 437 86.764 309.079 315.829 1.00120.01 ATOM 248 N ILE P 438 89.014 303.876 316.084 1.00113.95 ATOM 249 CA ILE P 438 88.697 302.465 316.238 1.00113.95 ATOM 250 C ILE P 438 89.057 301.971 317.634 1.00113.95 ATOM 251 O ILE P 438 88.306 301.197 318.237 1.00113.95 ATOM 252 CB ILE P 438 89.421 301.685 315.118 1.00113.95 ATOM 253 CG1 ILE P 438 88.642 301.725 313.783 1.00113.95 ATOM 254 CG2 ILE P 438 89.793 300.280 315.538 1.00113.95 ATOM 255 CD1 ILE P 438 87.274 300.997 313.784 1.00113.95 ATOM 256 N MET P 439 90.195 302.396 318.184 1.00113.57 ATOM 257 CA MET P 439 90.546 301.875 319.501 1.00113.57 ATOM 258 C MET P 439 89.751 302.508 320.632 1.00113.57 ATOM 259 O MET P 439 89.596 301.878 321.682 1.00113.57 ATOM 260 CB MET P 439 92.034 302.038 319.790 1.00113.57 ATOM 261 CG MET P 439 92.942 301.711 318.643 1.00113.57 ATOM 262 SD MET P 439 92.514 300.136 317.883 1.00113.57 ATOM 263 CE MET P 439 92.357 299.061 319.314 1.00113.57 ATOM 264 N HIS P 440 89.240 303.716 320.454 1.00116.27 ATOM 265 CA HIS P 440 88.486 304.372 321.519 1.00116.27 ATOM 266 C HIS P 440 87.257 303.585 321.818 1.00116.27 ATOM 267 O HIS P 440 87.035 302.588 321.183 1.00116.27 ATOM 268 CB HIS P 440 88.134 305.805 321.115 1.00116.27 ATOM 269 CG HIS P 440 86.997 306.429 321.880 1.00116.27 ATOM 270 ND1 HIS P 440 87.006 306.608 323.248 1.00116.27 ATOM 271 CD2 HIS P 440 85.834 306.967 321.442 1.00116.27 ATOM 272 CE1 HIS P 440 85.888 307.208 323.620 1.00116.27 ATOM 273 NE2 HIS P 440 85.159 307.437 322.543 1.00116.27 TER