HEADER RIBOSOME 31-DEC-69 7SYH TITLE Structure of the HCV IRES binding to the 40S ribosomal subunit, TITLE 2 closed conformation. Structure 2(delta dII) COMPND MOL_ID: 35; COMPND 2 MOLECULE: 60s ribosomal protein l41; COMPND 3 CHAIN: n; EXPDTA ELECTRON MICROSCOPY DBREF 7SYH n 1 25 UNP A0A087WN A0A087WNH4_ 1 25 SEQRES 1 n 25 MET ARG ALA LYS TRP ARG LYS LYS ARG MET ARG ARG LEU SEQRES 2 n 25 LYS ARG LYS ARG ARG LYS MET ARG GLN ARG SER LYS ATOM 1 N MET n 1 196.212 215.113 195.134 1.00 75.39 ATOM 2 CA MET n 1 196.739 215.510 193.834 1.00 75.39 ATOM 3 C MET n 1 195.961 214.860 192.697 1.00 75.39 ATOM 4 O MET n 1 196.142 213.678 192.407 1.00 75.39 ATOM 5 CB MET n 1 198.222 215.149 193.722 1.00 75.39 ATOM 6 CG MET n 1 198.898 215.681 192.468 1.00 75.39 ATOM 7 SD MET n 1 199.466 217.383 192.642 1.00 75.39 ATOM 8 CE MET n 1 200.430 217.571 191.144 1.00 75.39 ATOM 9 N ARG n 2 195.089 215.639 192.063 1.00 62.20 ATOM 10 CA ARG n 2 194.360 215.156 190.902 1.00 62.20 ATOM 11 C ARG n 2 195.294 215.033 189.703 1.00 62.20 ATOM 12 O ARG n 2 196.318 215.714 189.611 1.00 62.20 ATOM 13 CB ARG n 2 193.194 216.088 190.575 1.00 62.20 ATOM 14 CG ARG n 2 193.586 217.548 190.465 1.00 62.20 ATOM 15 CD ARG n 2 192.365 218.445 190.320 1.00 62.20 ATOM 16 NE ARG n 2 191.719 218.298 189.022 1.00 62.20 ATOM 17 CZ ARG n 2 190.694 219.031 188.609 1.00 62.20 ATOM 18 NH1 ARG n 2 190.170 219.976 189.371 1.00 62.20 ATOM 19 NH2 ARG n 2 190.182 218.809 187.402 1.00 62.20 ATOM 20 N ALA n 3 194.927 214.145 188.777 1.00 60.76 ATOM 21 CA ALA n 3 195.804 213.820 187.658 1.00 60.76 ATOM 22 C ALA n 3 195.871 214.926 186.612 1.00 60.76 ATOM 23 O ALA n 3 196.799 214.923 185.796 1.00 60.76 ATOM 24 CB ALA n 3 195.352 212.516 187.001 1.00 60.76 ATOM 25 N LYS n 4 194.923 215.868 186.622 1.00 58.08 ATOM 26 CA LYS n 4 194.881 216.897 185.586 1.00 58.08 ATOM 27 C LYS n 4 196.033 217.885 185.730 1.00 58.08 ATOM 28 O LYS n 4 196.712 218.209 184.749 1.00 58.08 ATOM 29 CB LYS n 4 193.540 217.629 185.622 1.00 58.08 ATOM 30 CG LYS n 4 193.288 218.505 184.405 1.00 58.08 ATOM 31 CD LYS n 4 191.863 219.032 184.376 1.00 58.08 ATOM 32 CE LYS n 4 191.594 219.809 183.097 1.00 58.08 ATOM 33 NZ LYS n 4 190.197 220.318 183.033 1.00 58.08 ATOM 34 N TRP n 5 196.282 218.369 186.950 1.00 63.32 ATOM 35 CA TRP n 5 197.365 219.331 187.125 1.00 63.32 ATOM 36 C TRP n 5 198.730 218.657 187.090 1.00 63.32 ATOM 37 O TRP n 5 199.712 219.286 186.684 1.00 63.32 ATOM 38 CB TRP n 5 197.183 220.122 188.423 1.00 63.32 ATOM 39 CG TRP n 5 195.824 220.781 188.599 1.00 63.32 ATOM 40 CD1 TRP n 5 195.016 220.674 189.691 1.00 63.32 ATOM 41 CD2 TRP n 5 195.135 221.658 187.682 1.00 63.32 ATOM 42 NE1 TRP n 5 193.870 221.405 189.513 1.00 63.32 ATOM 43 CE2 TRP n 5 193.918 222.020 188.291 1.00 63.32 ATOM 44 CE3 TRP n 5 195.427 222.168 186.409 1.00 63.32 ATOM 45 CZ2 TRP n 5 192.995 222.861 187.674 1.00 63.32 ATOM 46 CZ3 TRP n 5 194.507 222.997 185.799 1.00 63.32 ATOM 47 CH2 TRP n 5 193.306 223.336 186.432 1.00 63.32 ATOM 48 N ARG n 6 198.809 217.384 187.490 1.00 63.78 ATOM 49 CA ARG n 6 200.038 216.617 187.299 1.00 63.78 ATOM 50 C ARG n 6 200.344 216.433 185.817 1.00 63.78 ATOM 51 O ARG n 6 201.499 216.559 185.390 1.00 63.78 ATOM 52 CB ARG n 6 199.919 215.261 187.995 1.00 63.78 ATOM 53 CG ARG n 6 201.129 214.358 187.825 1.00 63.78 ATOM 54 CD ARG n 6 201.039 213.139 188.728 1.00 63.78 ATOM 55 NE ARG n 6 202.172 212.240 188.546 1.00 63.78 ATOM 56 CZ ARG n 6 203.337 212.363 189.169 1.00 63.78 ATOM 57 NH1 ARG n 6 203.561 213.343 190.029 1.00 63.78 ATOM 58 NH2 ARG n 6 204.300 211.479 188.924 1.00 63.78 ATOM 59 N LYS n 7 199.311 216.156 185.019 1.00 62.50 ATOM 60 CA LYS n 7 199.466 216.036 183.573 1.00 62.50 ATOM 61 C LYS n 7 199.846 217.373 182.941 1.00 62.50 ATOM 62 O LYS n 7 200.661 217.419 182.012 1.00 62.50 ATOM 63 CB LYS n 7 198.168 215.454 182.999 1.00 62.50 ATOM 64 CG LYS n 7 198.122 215.076 181.523 1.00 62.50 ATOM 65 CD LYS n 7 197.541 216.190 180.670 1.00 62.50 ATOM 66 CE LYS n 7 197.398 215.765 179.228 1.00 62.50 ATOM 67 NZ LYS n 7 196.836 216.879 178.431 1.00 62.50 ATOM 68 N LYS n 8 199.279 218.473 183.448 1.00 65.16 ATOM 69 CA LYS n 8 199.648 219.803 182.966 1.00 65.16 ATOM 70 C LYS n 8 201.096 220.144 183.309 1.00 65.16 ATOM 71 O LYS n 8 201.815 220.730 182.489 1.00 65.16 ATOM 72 CB LYS n 8 198.698 220.850 183.549 1.00 65.16 ATOM 73 CG LYS n 8 198.933 222.261 183.036 1.00 65.16 ATOM 74 CD LYS n 8 197.978 223.251 183.679 1.00 65.16 ATOM 75 CE LYS n 8 198.112 224.625 183.047 1.00 65.16 ATOM 76 NZ LYS n 8 197.808 224.585 181.591 1.00 65.16 ATOM 77 N ARG n 9 201.541 219.782 184.517 1.00 71.63 ATOM 78 CA ARG n 9 202.928 220.013 184.913 1.00 71.63 ATOM 79 C ARG n 9 203.887 219.160 184.091 1.00 71.63 ATOM 80 O ARG n 9 204.979 219.618 183.730 1.00 71.63 ATOM 81 CB ARG n 9 203.096 219.728 186.406 1.00 71.63 ATOM 82 CG ARG n 9 204.444 220.137 186.977 1.00 71.63 ATOM 83 CD ARG n 9 204.487 219.927 188.482 1.00 71.63 ATOM 84 NE ARG n 9 204.313 218.524 188.839 1.00 71.63 ATOM 85 CZ ARG n 9 204.197 218.076 190.081 1.00 71.63 ATOM 86 NH1 ARG n 9 204.229 218.897 191.118 1.00 71.63 ATOM 87 NH2 ARG n 9 204.046 216.771 190.288 1.00 71.63 ATOM 88 N MET n 10 203.488 217.924 183.776 1.00 67.93 ATOM 89 CA MET n 10 204.303 217.071 182.915 1.00 67.93 ATOM 90 C MET n 10 204.382 217.640 181.503 1.00 67.93 ATOM 91 O MET n 10 205.438 217.583 180.865 1.00 67.93 ATOM 92 CB MET n 10 203.746 215.640 182.926 1.00 67.93 ATOM 93 CG MET n 10 204.350 214.639 181.922 1.00 67.93 ATOM 94 SD MET n 10 203.684 214.584 180.239 1.00 67.93 ATOM 95 CE MET n 10 201.926 214.696 180.559 1.00 67.93 ATOM 96 N ARG n 11 203.277 218.203 181.003 1.00 67.05 ATOM 97 CA ARG n 11 203.286 218.835 179.685 1.00 67.05 ATOM 98 C ARG n 11 204.162 220.085 179.665 1.00 67.05 ATOM 99 O ARG n 11 204.864 220.342 178.680 1.00 67.05 ATOM 100 CB ARG n 11 201.854 219.162 179.259 1.00 67.05 ATOM 101 CG ARG n 11 201.737 219.831 177.902 1.00 67.05 ATOM 102 CD ARG n 11 200.349 219.668 177.316 1.00 67.05 ATOM 103 NE ARG n 11 200.084 218.281 176.955 1.00 67.05 ATOM 104 CZ ARG n 11 198.985 217.863 176.343 1.00 67.05 ATOM 105 NH1 ARG n 11 198.017 218.702 176.011 1.00 67.05 ATOM 106 NH2 ARG n 11 198.852 216.571 176.059 1.00 67.05 ATOM 107 N ARG n 12 204.145 220.867 180.749 1.00 71.66 ATOM 108 CA ARG n 12 205.019 222.036 180.837 1.00 71.66 ATOM 109 C ARG n 12 206.488 221.629 180.922 1.00 71.66 ATOM 110 O ARG n 12 207.362 222.297 180.351 1.00 71.66 ATOM 111 CB ARG n 12 204.627 222.896 182.038 1.00 71.66 ATOM 112 CG ARG n 12 203.317 223.647 181.855 1.00 71.66 ATOM 113 CD ARG n 12 203.100 224.664 182.962 1.00 71.66 ATOM 114 NE ARG n 12 201.943 225.513 182.704 1.00 71.66 ATOM 115 CZ ARG n 12 201.611 226.570 183.433 1.00 71.66 ATOM 116 NH1 ARG n 12 202.331 226.941 184.480 1.00 71.66 ATOM 117 NH2 ARG n 12 200.531 227.273 183.104 1.00 71.66 ATOM 118 N LEU n 13 206.776 220.526 181.621 1.00 81.65 ATOM 119 CA LEU n 13 208.140 220.006 181.662 1.00 81.65 ATOM 120 C LEU n 13 208.568 219.479 180.295 1.00 81.65 ATOM 121 O LEU n 13 209.737 219.611 179.912 1.00 81.65 ATOM 122 CB LEU n 13 208.246 218.919 182.736 1.00 81.65 ATOM 123 CG LEU n 13 209.623 218.435 183.201 1.00 81.65 ATOM 124 CD1 LEU n 13 209.565 218.125 184.685 1.00 81.65 ATOM 125 CD2 LEU n 13 210.088 217.198 182.442 1.00 81.65 ATOM 126 N LYS n 14 207.630 218.883 179.550 1.00 80.00 ATOM 127 CA LYS n 14 207.893 218.475 178.172 1.00 80.00 ATOM 128 C LYS n 14 208.198 219.676 177.286 1.00 80.00 ATOM 129 O LYS n 14 209.085 219.610 176.427 1.00 80.00 ATOM 130 CB LYS n 14 206.696 217.705 177.613 1.00 80.00 ATOM 131 CG LYS n 14 206.582 216.270 178.082 1.00 80.00 ATOM 132 CD LYS n 14 207.360 215.340 177.177 1.00 80.00 ATOM 133 CE LYS n 14 206.751 215.271 175.788 1.00 80.00 ATOM 134 NZ LYS n 14 207.451 214.268 174.937 1.00 80.00 ATOM 135 N ARG n 15 207.463 220.775 177.482 1.00 78.66 ATOM 136 CA ARG n 15 207.714 222.008 176.738 1.00 78.66 ATOM 137 C ARG n 15 209.100 222.562 177.039 1.00 78.66 ATOM 138 O ARG n 15 209.834 222.955 176.123 1.00 78.66 ATOM 139 CB ARG n 15 206.650 223.052 177.076 1.00 78.66 ATOM 140 CG ARG n 15 205.330 222.859 176.371 1.00 78.66 ATOM 141 CD ARG n 15 205.282 223.654 175.077 1.00 78.66 ATOM 142 NE ARG n 15 203.913 223.893 174.635 1.00 78.66 ATOM 143 CZ ARG n 15 203.173 224.927 175.011 1.00 78.66 ATOM 144 NH1 ARG n 15 203.641 225.847 175.839 1.00 78.66 ATOM 145 NH2 ARG n 15 201.933 225.041 174.546 1.00 78.66 ATOM 146 N LYS n 16 209.473 222.588 178.323 1.00 92.82 ATOM 147 CA LYS n 16 210.785 223.099 178.715 1.00 92.82 ATOM 148 C LYS n 16 211.912 222.221 178.181 1.00 92.82 ATOM 149 O LYS n 16 212.924 222.734 177.683 1.00 92.82 ATOM 150 CB LYS n 16 210.866 223.212 180.237 1.00 92.82 ATOM 151 CG LYS n 16 212.187 223.756 180.754 1.00 92.82 ATOM 152 CD LYS n 16 212.478 225.135 180.190 1.00 92.82 ATOM 153 CE LYS n 16 213.805 225.665 180.703 1.00 92.82 ATOM 154 NZ LYS n 16 214.930 224.753 180.358 1.00 92.82 ATOM 155 N ARG n 17 211.739 220.895 178.252 1.00 99.25 ATOM 156 CA ARG n 17 212.749 219.968 177.751 1.00 99.25 ATOM 157 C ARG n 17 212.895 220.063 176.236 1.00 99.25 ATOM 158 O ARG n 17 214.018 220.044 175.716 1.00 99.25 ATOM 159 CB ARG n 17 212.402 218.542 178.176 1.00 99.25 ATOM 160 CG ARG n 17 213.411 217.496 177.740 1.00 99.25 ATOM 161 CD ARG n 17 213.403 216.308 178.681 1.00 99.25 ATOM 162 NE ARG n 17 212.047 215.884 179.008 1.00 99.25 ATOM 163 CZ ARG n 17 211.752 214.941 179.891 1.00 99.25 ATOM 164 NH1 ARG n 17 212.697 214.301 180.561 1.00 99.25 ATOM 165 NH2 ARG n 17 210.478 214.633 180.110 1.00 99.25 ATOM 166 N ARG n 18 211.772 220.194 175.517 1.00111.90 ATOM 167 CA ARG n 18 211.813 220.364 174.067 1.00111.90 ATOM 168 C ARG n 18 212.482 221.679 173.680 1.00111.90 ATOM 169 O ARG n 18 213.268 221.721 172.726 1.00111.90 ATOM 170 CB ARG n 18 210.395 220.293 173.494 1.00111.90 ATOM 171 CG ARG n 18 210.298 220.551 171.994 1.00111.90 ATOM 172 CD ARG n 18 208.857 220.502 171.502 1.00111.90 ATOM 173 NE ARG n 18 208.315 219.148 171.479 1.00111.90 ATOM 174 CZ ARG n 18 207.398 218.699 172.324 1.00111.90 ATOM 175 NH1 ARG n 18 206.896 219.473 173.272 1.00111.90 ATOM 176 NH2 ARG n 18 206.975 217.442 172.217 1.00111.90 ATOM 177 N LYS n 19 212.200 222.757 174.424 1.00124.19 ATOM 178 CA LYS n 19 212.814 224.050 174.130 1.00124.19 ATOM 179 C LYS n 19 214.320 224.031 174.374 1.00124.19 ATOM 180 O LYS n 19 215.089 224.554 173.557 1.00124.19 ATOM 181 CB LYS n 19 212.153 225.151 174.958 1.00124.19 ATOM 182 CG LYS n 19 210.799 225.599 174.437 1.00124.19 ATOM 183 CD LYS n 19 210.380 226.910 175.075 1.00124.19 ATOM 184 CE LYS n 19 210.230 226.769 176.583 1.00124.19 ATOM 185 NZ LYS n 19 209.121 225.850 176.958 1.00124.19 ATOM 186 N MET n 20 214.768 223.415 175.478 1.00150.51 ATOM 187 CA MET n 20 216.206 223.384 175.744 1.00150.51 ATOM 188 C MET n 20 216.923 222.425 174.798 1.00150.51 ATOM 189 O MET n 20 218.090 222.647 174.456 1.00150.51 ATOM 190 CB MET n 20 216.491 223.045 177.217 1.00150.51 ATOM 191 CG MET n 20 216.014 221.689 177.757 1.00150.51 ATOM 192 SD MET n 20 217.009 220.224 177.381 1.00150.51 ATOM 193 CE MET n 20 218.446 220.530 178.404 1.00150.51 ATOM 194 N ARG n 21 216.243 221.359 174.359 1.00163.60 ATOM 195 CA ARG n 21 216.831 220.464 173.368 1.00163.60 ATOM 196 C ARG n 21 216.940 221.141 172.005 1.00163.60 ATOM 197 O ARG n 21 217.920 220.934 171.279 1.00163.60 ATOM 198 CB ARG n 21 216.006 219.179 173.278 1.00163.60 ATOM 199 CG ARG n 21 216.583 218.123 172.354 1.00163.60 ATOM 200 CD ARG n 21 218.015 217.790 172.729 1.00163.60 ATOM 201 NE ARG n 21 218.588 216.779 171.850 1.00163.60 ATOM 202 CZ ARG n 21 219.888 216.624 171.639 1.00163.60 ATOM 203 NH1 ARG n 21 220.780 217.410 172.219 1.00163.60 ATOM 204 NH2 ARG n 21 220.302 215.661 170.821 1.00163.60 ATOM 205 N GLN n 22 215.945 221.959 171.646 1.00162.86 ATOM 206 CA GLN n 22 216.004 222.702 170.392 1.00162.86 ATOM 207 C GLN n 22 217.083 223.779 170.435 1.00162.86 ATOM 208 O GLN n 22 217.780 224.010 169.440 1.00162.86 ATOM 209 CB GLN n 22 214.637 223.318 170.088 1.00162.86 ATOM 210 CG GLN n 22 214.549 224.041 168.752 1.00162.86 ATOM 211 CD GLN n 22 214.661 223.103 167.566 1.00162.86 ATOM 212 OE1 GLN n 22 215.749 222.882 167.035 1.00162.86 ATOM 213 NE2 GLN n 22 213.531 222.551 167.140 1.00162.86 ATOM 214 N ARG n 23 217.242 224.443 171.583 1.00164.72 ATOM 215 CA ARG n 23 218.268 225.475 171.699 1.00164.72 ATOM 216 C ARG n 23 219.668 224.880 171.810 1.00164.72 ATOM 217 O ARG n 23 220.642 225.519 171.397 1.00164.72 ATOM 218 CB ARG n 23 217.980 226.372 172.903 1.00164.72 ATOM 219 CG ARG n 23 216.783 227.290 172.723 1.00164.72 ATOM 220 CD ARG n 23 216.634 228.229 173.909 1.00164.72 ATOM 221 NE ARG n 23 216.438 227.507 175.161 1.00164.72 ATOM 222 CZ ARG n 23 215.268 227.364 175.767 1.00164.72 ATOM 223 NH1 ARG n 23 214.161 227.889 175.266 1.00164.72 ATOM 224 NH2 ARG n 23 215.207 226.682 176.907 1.00164.72 ATOM 225 N SER n 24 219.791 223.672 172.365 1.00186.76 ATOM 226 CA SER n 24 221.102 223.056 172.537 1.00186.76 ATOM 227 C SER n 24 221.672 222.533 171.225 1.00186.76 ATOM 228 O SER n 24 222.888 222.599 171.014 1.00186.76 ATOM 229 CB SER n 24 221.019 221.923 173.560 1.00186.76 ATOM 230 OG SER n 24 222.289 221.332 173.775 1.00186.76 ATOM 231 N LYS n 25 220.825 222.013 170.344 1.00196.62 ATOM 232 CA LYS n 25 221.284 221.505 169.058 1.00196.62 ATOM 233 C LYS n 25 221.552 222.653 168.090 1.00196.62 ATOM 234 O LYS n 25 222.606 223.286 168.140 1.00196.62 ATOM 235 CB LYS n 25 220.259 220.539 168.462 1.00196.62 ATOM 236 CG LYS n 25 220.682 219.935 167.132 1.00196.62 ATOM 237 CD LYS n 25 219.638 218.964 166.604 1.00196.62 ATOM 238 CE LYS n 25 220.045 218.400 165.252 1.00196.62 ATOM 239 NZ LYS n 25 219.033 217.446 164.721 1.00196.62 TER