HEADER RIBOSOME 31-DEC-69 7SYI TITLE Structure of the HCV IRES binding to the 40S ribosomal subunit, TITLE 2 closed conformation. Structure 3(delta dII) COMPND MOL_ID: 35; COMPND 2 MOLECULE: 60s ribosomal protein l41; COMPND 3 CHAIN: n; EXPDTA ELECTRON MICROSCOPY DBREF 7SYI n 1 25 UNP A0A087WN A0A087WNH4_ 1 25 SEQRES 1 n 25 MET ARG ALA LYS TRP ARG LYS LYS ARG MET ARG ARG LEU SEQRES 2 n 25 LYS ARG LYS ARG ARG LYS MET ARG GLN ARG SER LYS ATOM 1 N MET n 1 197.263 215.309 194.518 1.00 65.33 ATOM 2 CA MET n 1 196.982 216.245 193.437 1.00 65.33 ATOM 3 C MET n 1 195.899 215.671 192.539 1.00 65.33 ATOM 4 O MET n 1 195.548 214.496 192.650 1.00 65.33 ATOM 5 CB MET n 1 198.238 216.517 192.613 1.00 65.33 ATOM 6 CG MET n 1 198.633 215.348 191.725 1.00 65.33 ATOM 7 SD MET n 1 199.214 213.906 192.634 1.00 65.33 ATOM 8 CE MET n 1 200.762 214.515 193.274 1.00 65.33 ATOM 9 N ARG n 2 195.367 216.498 191.647 1.00 62.11 ATOM 10 CA ARG n 2 194.524 215.978 190.584 1.00 62.11 ATOM 11 C ARG n 2 195.359 215.754 189.330 1.00 62.11 ATOM 12 O ARG n 2 196.421 216.355 189.148 1.00 62.11 ATOM 13 CB ARG n 2 193.362 216.927 190.296 1.00 62.11 ATOM 14 CG ARG n 2 193.765 218.351 189.971 1.00 62.11 ATOM 15 CD ARG n 2 192.535 219.222 189.777 1.00 62.11 ATOM 16 NE ARG n 2 191.831 218.901 188.541 1.00 62.11 ATOM 17 CZ ARG n 2 190.830 219.613 188.042 1.00 62.11 ATOM 18 NH1 ARG n 2 190.382 220.698 188.651 1.00 62.11 ATOM 19 NH2 ARG n 2 190.264 219.225 186.902 1.00 62.11 ATOM 20 N ALA n 3 194.867 214.870 188.459 1.00 63.12 ATOM 21 CA ALA n 3 195.626 214.487 187.275 1.00 63.12 ATOM 22 C ALA n 3 195.685 215.594 186.232 1.00 63.12 ATOM 23 O ALA n 3 196.564 215.559 185.364 1.00 63.12 ATOM 24 CB ALA n 3 195.030 213.221 186.659 1.00 63.12 ATOM 25 N LYS n 4 194.792 216.582 186.313 1.00 60.03 ATOM 26 CA LYS n 4 194.723 217.630 185.299 1.00 60.03 ATOM 27 C LYS n 4 195.931 218.558 185.365 1.00 60.03 ATOM 28 O LYS n 4 196.670 218.707 184.384 1.00 60.03 ATOM 29 CB LYS n 4 193.429 218.425 185.467 1.00 60.03 ATOM 30 CG LYS n 4 193.276 219.552 184.475 1.00 60.03 ATOM 31 CD LYS n 4 191.957 219.461 183.739 1.00 60.03 ATOM 32 CE LYS n 4 191.881 220.518 182.662 1.00 60.03 ATOM 33 NZ LYS n 4 190.646 220.395 181.856 1.00 60.03 ATOM 34 N TRP n 5 196.154 219.195 186.516 1.00 60.97 ATOM 35 CA TRP n 5 197.277 220.120 186.604 1.00 60.97 ATOM 36 C TRP n 5 198.602 219.385 186.741 1.00 60.97 ATOM 37 O TRP n 5 199.649 219.943 186.403 1.00 60.97 ATOM 38 CB TRP n 5 197.076 221.107 187.756 1.00 60.97 ATOM 39 CG TRP n 5 195.671 221.668 187.890 1.00 60.97 ATOM 40 CD1 TRP n 5 194.922 221.685 189.026 1.00 60.97 ATOM 41 CD2 TRP n 5 194.864 222.299 186.872 1.00 60.97 ATOM 42 NE1 TRP n 5 193.704 222.271 188.788 1.00 60.97 ATOM 43 CE2 TRP n 5 193.643 222.657 187.476 1.00 60.97 ATOM 44 CE3 TRP n 5 195.054 222.597 185.516 1.00 60.97 ATOM 45 CZ2 TRP n 5 192.620 223.290 186.774 1.00 60.97 ATOM 46 CZ3 TRP n 5 194.034 223.218 184.821 1.00 60.97 ATOM 47 CH2 TRP n 5 192.835 223.560 185.452 1.00 60.97 ATOM 48 N ARG n 6 198.580 218.129 187.191 1.00 63.73 ATOM 49 CA ARG n 6 199.783 217.303 187.133 1.00 63.73 ATOM 50 C ARG n 6 200.168 217.002 185.687 1.00 63.73 ATOM 51 O ARG n 6 201.350 217.046 185.323 1.00 63.73 ATOM 52 CB ARG n 6 199.568 216.009 187.915 1.00 63.73 ATOM 53 CG ARG n 6 200.793 215.115 187.973 1.00 63.73 ATOM 54 CD ARG n 6 200.403 213.644 187.954 1.00 63.73 ATOM 55 NE ARG n 6 199.315 213.360 187.022 1.00 63.73 ATOM 56 CZ ARG n 6 199.437 213.288 185.702 1.00 63.73 ATOM 57 NH1 ARG n 6 200.605 213.446 185.102 1.00 63.73 ATOM 58 NH2 ARG n 6 198.357 213.043 184.965 1.00 63.73 ATOM 59 N LYS n 7 199.171 216.710 184.844 1.00 63.85 ATOM 60 CA LYS n 7 199.422 216.510 183.420 1.00 63.85 ATOM 61 C LYS n 7 199.870 217.805 182.755 1.00 63.85 ATOM 62 O LYS n 7 200.728 217.788 181.868 1.00 63.85 ATOM 63 CB LYS n 7 198.166 215.954 182.746 1.00 63.85 ATOM 64 CG LYS n 7 198.276 215.761 181.239 1.00 63.85 ATOM 65 CD LYS n 7 197.005 215.170 180.655 1.00 63.85 ATOM 66 CE LYS n 7 196.778 213.751 181.148 1.00 63.85 ATOM 67 NZ LYS n 7 197.881 212.840 180.735 1.00 63.85 ATOM 68 N LYS n 8 199.314 218.940 183.190 1.00 66.77 ATOM 69 CA LYS n 8 199.755 220.240 182.685 1.00 66.77 ATOM 70 C LYS n 8 201.199 220.536 183.086 1.00 66.77 ATOM 71 O LYS n 8 201.973 221.086 182.293 1.00 66.77 ATOM 72 CB LYS n 8 198.816 221.334 183.195 1.00 66.77 ATOM 73 CG LYS n 8 199.135 222.732 182.695 1.00 66.77 ATOM 74 CD LYS n 8 198.199 223.759 183.310 1.00 66.77 ATOM 75 CE LYS n 8 198.429 225.139 182.722 1.00 66.77 ATOM 76 NZ LYS n 8 198.182 225.160 181.255 1.00 66.77 ATOM 77 N ARG n 9 201.579 220.168 184.312 1.00 74.02 ATOM 78 CA ARG n 9 202.953 220.347 184.773 1.00 74.02 ATOM 79 C ARG n 9 203.922 219.454 184.006 1.00 74.02 ATOM 80 O ARG n 9 205.023 219.889 183.642 1.00 74.02 ATOM 81 CB ARG n 9 203.029 220.063 186.272 1.00 74.02 ATOM 82 CG ARG n 9 204.319 220.495 186.935 1.00 74.02 ATOM 83 CD ARG n 9 204.306 220.122 188.404 1.00 74.02 ATOM 84 NE ARG n 9 204.352 218.678 188.595 1.00 74.02 ATOM 85 CZ ARG n 9 204.273 218.076 189.773 1.00 74.02 ATOM 86 NH1 ARG n 9 204.127 218.766 190.893 1.00 74.02 ATOM 87 NH2 ARG n 9 204.338 216.749 189.830 1.00 74.02 ATOM 88 N MET n 10 203.527 218.204 183.746 1.00 68.66 ATOM 89 CA MET n 10 204.362 217.316 182.944 1.00 68.66 ATOM 90 C MET n 10 204.439 217.787 181.495 1.00 68.66 ATOM 91 O MET n 10 205.476 217.629 180.843 1.00 68.66 ATOM 92 CB MET n 10 203.827 215.885 183.024 1.00 68.66 ATOM 93 CG MET n 10 204.721 214.862 182.358 1.00 68.66 ATOM 94 SD MET n 10 206.278 214.752 183.257 1.00 68.66 ATOM 95 CE MET n 10 207.370 214.124 181.989 1.00 68.66 ATOM 96 N ARG n 11 203.358 218.391 180.995 1.00 65.80 ATOM 97 CA ARG n 11 203.345 219.006 179.672 1.00 65.80 ATOM 98 C ARG n 11 204.324 220.172 179.595 1.00 65.80 ATOM 99 O ARG n 11 205.046 220.322 178.601 1.00 65.80 ATOM 100 CB ARG n 11 201.921 219.474 179.369 1.00 65.80 ATOM 101 CG ARG n 11 201.589 219.794 177.931 1.00 65.80 ATOM 102 CD ARG n 11 200.183 220.373 177.874 1.00 65.80 ATOM 103 NE ARG n 11 199.719 220.627 176.517 1.00 65.80 ATOM 104 CZ ARG n 11 198.920 219.814 175.841 1.00 65.80 ATOM 105 NH1 ARG n 11 198.466 218.692 176.374 1.00 65.80 ATOM 106 NH2 ARG n 11 198.571 220.133 174.598 1.00 65.80 ATOM 107 N ARG n 12 204.360 221.001 180.642 1.00 69.85 ATOM 108 CA ARG n 12 205.316 222.103 180.701 1.00 69.85 ATOM 109 C ARG n 12 206.750 221.594 180.792 1.00 69.85 ATOM 110 O ARG n 12 207.661 222.177 180.193 1.00 69.85 ATOM 111 CB ARG n 12 205.000 223.012 181.888 1.00 69.85 ATOM 112 CG ARG n 12 203.781 223.893 181.693 1.00 69.85 ATOM 113 CD ARG n 12 203.774 225.037 182.693 1.00 69.85 ATOM 114 NE ARG n 12 202.779 226.049 182.361 1.00 69.85 ATOM 115 CZ ARG n 12 202.715 227.248 182.924 1.00 69.85 ATOM 116 NH1 ARG n 12 203.582 227.625 183.849 1.00 69.85 ATOM 117 NH2 ARG n 12 201.757 228.090 182.548 1.00 69.85 ATOM 118 N LEU n 13 206.966 220.511 181.545 1.00 70.87 ATOM 119 CA LEU n 13 208.294 219.905 181.624 1.00 70.87 ATOM 120 C LEU n 13 208.727 219.333 180.276 1.00 70.87 ATOM 121 O LEU n 13 209.896 219.452 179.892 1.00 70.87 ATOM 122 CB LEU n 13 208.306 218.819 182.701 1.00 70.87 ATOM 123 CG LEU n 13 209.538 217.917 182.803 1.00 70.87 ATOM 124 CD1 LEU n 13 210.784 218.733 183.122 1.00 70.87 ATOM 125 CD2 LEU n 13 209.321 216.826 183.842 1.00 70.87 ATOM 126 N LYS n 14 207.792 218.721 179.545 1.00 72.58 ATOM 127 CA LYS n 14 208.075 218.210 178.205 1.00 72.58 ATOM 128 C LYS n 14 208.406 219.342 177.239 1.00 72.58 ATOM 129 O LYS n 14 209.314 219.221 176.406 1.00 72.58 ATOM 130 CB LYS n 14 206.874 217.407 177.703 1.00 72.58 ATOM 131 CG LYS n 14 206.991 216.898 176.275 1.00 72.58 ATOM 132 CD LYS n 14 208.042 215.819 176.170 1.00 72.58 ATOM 133 CE LYS n 14 208.061 215.179 174.796 1.00 72.58 ATOM 134 NZ LYS n 14 209.138 214.158 174.691 1.00 72.58 ATOM 135 N ARG n 15 207.672 220.455 177.343 1.00 76.09 ATOM 136 CA ARG n 15 207.946 221.620 176.508 1.00 76.09 ATOM 137 C ARG n 15 209.309 222.223 176.825 1.00 76.09 ATOM 138 O ARG n 15 210.043 222.622 175.915 1.00 76.09 ATOM 139 CB ARG n 15 206.839 222.660 176.687 1.00 76.09 ATOM 140 CG ARG n 15 207.005 223.909 175.839 1.00 76.09 ATOM 141 CD ARG n 15 205.706 224.687 175.755 1.00 76.09 ATOM 142 NE ARG n 15 205.161 224.984 177.074 1.00 76.09 ATOM 143 CZ ARG n 15 203.956 225.494 177.287 1.00 76.09 ATOM 144 NH1 ARG n 15 203.137 225.773 176.286 1.00 76.09 ATOM 145 NH2 ARG n 15 203.562 225.729 178.536 1.00 76.09 ATOM 146 N LYS n 16 209.674 222.271 178.110 1.00 77.22 ATOM 147 CA LYS n 16 210.990 222.773 178.497 1.00 77.22 ATOM 148 C LYS n 16 212.103 221.833 178.043 1.00 77.22 ATOM 149 O LYS n 16 213.186 222.288 177.660 1.00 77.22 ATOM 150 CB LYS n 16 211.043 222.982 180.011 1.00 77.22 ATOM 151 CG LYS n 16 212.294 223.688 180.522 1.00 77.22 ATOM 152 CD LYS n 16 212.631 224.925 179.704 1.00 77.22 ATOM 153 CE LYS n 16 213.621 225.814 180.438 1.00 77.22 ATOM 154 NZ LYS n 16 214.700 225.017 181.084 1.00 77.22 ATOM 155 N ARG n 17 211.852 220.520 178.069 1.00 74.43 ATOM 156 CA ARG n 17 212.842 219.561 177.587 1.00 74.43 ATOM 157 C ARG n 17 213.043 219.673 176.080 1.00 74.43 ATOM 158 O ARG n 17 214.176 219.594 175.596 1.00 74.43 ATOM 159 CB ARG n 17 212.434 218.138 177.962 1.00 74.43 ATOM 160 CG ARG n 17 212.728 217.755 179.403 1.00 74.43 ATOM 161 CD ARG n 17 212.567 216.256 179.622 1.00 74.43 ATOM 162 NE ARG n 17 213.609 215.482 178.956 1.00 74.43 ATOM 163 CZ ARG n 17 213.434 214.789 177.839 1.00 74.43 ATOM 164 NH1 ARG n 17 212.268 214.765 177.215 1.00 74.43 ATOM 165 NH2 ARG n 17 214.457 214.107 177.331 1.00 74.43 ATOM 166 N ARG n 18 211.960 219.862 175.322 1.00 81.01 ATOM 167 CA ARG n 18 212.105 220.063 173.882 1.00 81.01 ATOM 168 C ARG n 18 212.742 221.414 173.570 1.00 81.01 ATOM 169 O ARG n 18 213.476 221.547 172.581 1.00 81.01 ATOM 170 CB ARG n 18 210.750 219.924 173.191 1.00 81.01 ATOM 171 CG ARG n 18 210.379 218.486 172.872 1.00 81.01 ATOM 172 CD ARG n 18 208.999 218.395 172.257 1.00 81.01 ATOM 173 NE ARG n 18 207.969 218.771 173.216 1.00 81.01 ATOM 174 CZ ARG n 18 206.667 218.735 172.974 1.00 81.01 ATOM 175 NH1 ARG n 18 206.192 218.357 171.799 1.00 81.01 ATOM 176 NH2 ARG n 18 205.820 219.086 173.936 1.00 81.01 ATOM 177 N LYS n 19 212.476 222.420 174.411 1.00 92.03 ATOM 178 CA LYS n 19 213.142 223.716 174.309 1.00 92.03 ATOM 179 C LYS n 19 214.645 223.571 174.518 1.00 92.03 ATOM 180 O LYS n 19 215.449 224.155 173.784 1.00 92.03 ATOM 181 CB LYS n 19 212.545 224.671 175.346 1.00 92.03 ATOM 182 CG LYS n 19 212.964 226.124 175.223 1.00 92.03 ATOM 183 CD LYS n 19 212.012 226.891 174.322 1.00 92.03 ATOM 184 CE LYS n 19 212.345 228.373 174.307 1.00 92.03 ATOM 185 NZ LYS n 19 212.289 228.965 175.671 1.00 92.03 ATOM 186 N MET n 20 215.036 222.765 175.507 1.00 96.82 ATOM 187 CA MET n 20 216.448 222.489 175.750 1.00 96.82 ATOM 188 C MET n 20 217.050 221.655 174.624 1.00 96.82 ATOM 189 O MET n 20 218.236 221.795 174.307 1.00 96.82 ATOM 190 CB MET n 20 216.606 221.787 177.101 1.00 96.82 ATOM 191 CG MET n 20 218.039 221.544 177.546 1.00 96.82 ATOM 192 SD MET n 20 218.127 220.728 179.150 1.00 96.82 ATOM 193 CE MET n 20 217.615 222.063 180.229 1.00 96.82 ATOM 194 N ARG n 21 216.240 220.793 174.002 1.00 92.32 ATOM 195 CA ARG n 21 216.710 219.996 172.871 1.00 92.32 ATOM 196 C ARG n 21 217.021 220.870 171.661 1.00 92.32 ATOM 197 O ARG n 21 218.055 220.692 171.005 1.00 92.32 ATOM 198 CB ARG n 21 215.672 218.932 172.510 1.00 92.32 ATOM 199 CG ARG n 21 216.123 217.996 171.399 1.00 92.32 ATOM 200 CD ARG n 21 215.057 216.969 171.054 1.00 92.32 ATOM 201 NE ARG n 21 215.326 215.683 171.685 1.00 92.32 ATOM 202 CZ ARG n 21 214.982 214.509 171.173 1.00 92.32 ATOM 203 NH1 ARG n 21 214.331 214.419 170.025 1.00 92.32 ATOM 204 NH2 ARG n 21 215.302 213.397 171.828 1.00 92.32 ATOM 205 N GLN n 22 216.139 221.822 171.346 1.00105.55 ATOM 206 CA GLN n 22 216.430 222.702 170.217 1.00105.55 ATOM 207 C GLN n 22 217.474 223.758 170.567 1.00105.55 ATOM 208 O GLN n 22 218.158 224.252 169.667 1.00105.55 ATOM 209 CB GLN n 22 215.157 223.375 169.687 1.00105.55 ATOM 210 CG GLN n 22 214.299 224.079 170.716 1.00105.55 ATOM 211 CD GLN n 22 214.701 225.524 170.916 1.00105.55 ATOM 212 OE1 GLN n 22 215.342 226.125 170.056 1.00105.55 ATOM 213 NE2 GLN n 22 214.346 226.082 172.062 1.00105.55 ATOM 214 N ARG n 23 217.607 224.122 171.847 1.00104.61 ATOM 215 CA ARG n 23 218.653 225.049 172.259 1.00104.61 ATOM 216 C ARG n 23 220.019 224.386 172.370 1.00104.61 ATOM 217 O ARG n 23 221.036 225.090 172.366 1.00104.61 ATOM 218 CB ARG n 23 218.292 225.691 173.600 1.00104.61 ATOM 219 CG ARG n 23 217.373 226.896 173.492 1.00104.61 ATOM 220 CD ARG n 23 216.596 227.115 174.783 1.00104.61 ATOM 221 NE ARG n 23 217.447 226.999 175.961 1.00104.61 ATOM 222 CZ ARG n 23 217.035 227.189 177.206 1.00104.61 ATOM 223 NH1 ARG n 23 215.784 227.524 177.477 1.00104.61 ATOM 224 NH2 ARG n 23 217.900 227.043 178.206 1.00104.61 ATOM 225 N SER n 24 220.068 223.057 172.473 1.00122.54 ATOM 226 CA SER n 24 221.329 222.330 172.617 1.00122.54 ATOM 227 C SER n 24 221.839 221.958 171.228 1.00122.54 ATOM 228 O SER n 24 221.771 220.808 170.788 1.00122.54 ATOM 229 CB SER n 24 221.142 221.102 173.499 1.00122.54 ATOM 230 OG SER n 24 222.341 220.353 173.595 1.00122.54 ATOM 231 N LYS n 25 222.359 222.961 170.528 1.00118.00 ATOM 232 CA LYS n 25 222.901 222.755 169.191 1.00118.00 ATOM 233 C LYS n 25 224.325 223.288 169.095 1.00118.00 ATOM 234 O LYS n 25 225.277 222.612 169.482 1.00118.00 ATOM 235 CB LYS n 25 222.011 223.423 168.139 1.00118.00 ATOM 236 CG LYS n 25 220.633 222.790 167.998 1.00118.00 ATOM 237 CD LYS n 25 220.731 221.314 167.647 1.00118.00 ATOM 238 CE LYS n 25 219.365 220.646 167.653 1.00118.00 ATOM 239 NZ LYS n 25 218.460 221.203 166.613 1.00118.00 TER