HEADER RIBOSOME 31-DEC-69 7SYJ TITLE Structure of the HCV IRES binding to the 40S ribosomal subunit, TITLE 2 closed conformation. Structure 4(delta dII) COMPND MOL_ID: 34; COMPND 2 MOLECULE: 60s ribosomal protein l41; COMPND 3 CHAIN: n; EXPDTA ELECTRON MICROSCOPY DBREF 7SYJ n 1 25 UNP A0A087WN A0A087WNH4_ 1 25 SEQRES 1 n 25 MET ARG ALA LYS TRP ARG LYS LYS ARG MET ARG ARG LEU SEQRES 2 n 25 LYS ARG LYS ARG ARG LYS MET ARG GLN ARG SER LYS ATOM 1 N MET n 1 196.573 213.042 194.267 1.00 91.05 ATOM 2 CA MET n 1 197.191 213.898 193.262 1.00 91.05 ATOM 3 C MET n 1 196.443 213.690 191.949 1.00 91.05 ATOM 4 O MET n 1 196.554 212.628 191.335 1.00 91.05 ATOM 5 CB MET n 1 198.674 213.557 193.098 1.00 91.05 ATOM 6 CG MET n 1 199.527 214.544 192.291 1.00 91.05 ATOM 7 SD MET n 1 199.295 216.296 192.685 1.00 91.05 ATOM 8 CE MET n 1 198.278 216.878 191.333 1.00 91.05 ATOM 9 N ARG n 2 195.681 214.695 191.522 1.00 73.66 ATOM 10 CA ARG n 2 194.832 214.571 190.343 1.00 73.66 ATOM 11 C ARG n 2 195.689 214.578 189.078 1.00 73.66 ATOM 12 O ARG n 2 196.873 214.925 189.095 1.00 73.66 ATOM 13 CB ARG n 2 193.783 215.677 190.325 1.00 73.66 ATOM 14 CG ARG n 2 194.360 217.076 190.327 1.00 73.66 ATOM 15 CD ARG n 2 193.253 218.111 190.289 1.00 73.66 ATOM 16 NE ARG n 2 192.466 218.006 189.066 1.00 73.66 ATOM 17 CZ ARG n 2 191.490 218.838 188.729 1.00 73.66 ATOM 18 NH1 ARG n 2 191.146 219.853 189.504 1.00 73.66 ATOM 19 NH2 ARG n 2 190.838 218.643 187.586 1.00 73.66 ATOM 20 N ALA n 3 195.091 214.195 187.953 1.00 66.38 ATOM 21 CA ALA n 3 195.837 213.983 186.721 1.00 66.38 ATOM 22 C ALA n 3 195.933 215.208 185.829 1.00 66.38 ATOM 23 O ALA n 3 196.833 215.264 184.991 1.00 66.38 ATOM 24 CB ALA n 3 195.214 212.837 185.914 1.00 66.38 ATOM 25 N LYS n 4 195.051 216.197 186.001 1.00 63.44 ATOM 26 CA LYS n 4 194.954 217.276 185.020 1.00 63.44 ATOM 27 C LYS n 4 196.119 218.252 185.136 1.00 63.44 ATOM 28 O LYS n 4 196.838 218.488 184.159 1.00 63.44 ATOM 29 CB LYS n 4 193.622 218.010 185.167 1.00 63.44 ATOM 30 CG LYS n 4 193.288 218.886 183.973 1.00 63.44 ATOM 31 CD LYS n 4 191.855 219.385 184.009 1.00 63.44 ATOM 32 CE LYS n 4 191.505 220.095 182.709 1.00 63.44 ATOM 33 NZ LYS n 4 190.085 220.538 182.659 1.00 63.44 ATOM 34 N TRP n 5 196.329 218.832 186.322 1.00 65.75 ATOM 35 CA TRP n 5 197.422 219.789 186.459 1.00 65.75 ATOM 36 C TRP n 5 198.773 219.090 186.502 1.00 65.75 ATOM 37 O TRP n 5 199.787 219.688 186.123 1.00 65.75 ATOM 38 CB TRP n 5 197.222 220.663 187.699 1.00 65.75 ATOM 39 CG TRP n 5 195.784 221.031 188.010 1.00 65.75 ATOM 40 CD1 TRP n 5 195.153 220.859 189.206 1.00 65.75 ATOM 41 CD2 TRP n 5 194.813 221.637 187.132 1.00 65.75 ATOM 42 NE1 TRP n 5 193.859 221.307 189.132 1.00 65.75 ATOM 43 CE2 TRP n 5 193.624 221.789 187.872 1.00 65.75 ATOM 44 CE3 TRP n 5 194.832 222.064 185.797 1.00 65.75 ATOM 45 CZ2 TRP n 5 192.469 222.343 187.325 1.00 65.75 ATOM 46 CZ3 TRP n 5 193.683 222.607 185.257 1.00 65.75 ATOM 47 CH2 TRP n 5 192.520 222.746 186.020 1.00 65.75 ATOM 48 N ARG n 6 198.796 217.827 186.939 1.00 62.14 ATOM 49 CA ARG n 6 199.992 216.999 186.811 1.00 62.14 ATOM 50 C ARG n 6 200.379 216.823 185.349 1.00 62.14 ATOM 51 O ARG n 6 201.546 217.005 184.975 1.00 62.14 ATOM 52 CB ARG n 6 199.748 215.642 187.470 1.00 62.14 ATOM 53 CG ARG n 6 200.873 214.639 187.295 1.00 62.14 ATOM 54 CD ARG n 6 200.479 213.288 187.870 1.00 62.14 ATOM 55 NE ARG n 6 201.552 212.308 187.760 1.00 62.14 ATOM 56 CZ ARG n 6 202.474 212.099 188.690 1.00 62.14 ATOM 57 NH1 ARG n 6 202.483 212.785 189.820 1.00 62.14 ATOM 58 NH2 ARG n 6 203.408 211.176 188.480 1.00 62.14 ATOM 59 N LYS n 7 199.393 216.512 184.500 1.00 61.21 ATOM 60 CA LYS n 7 199.640 216.369 183.070 1.00 61.21 ATOM 61 C LYS n 7 200.017 217.703 182.440 1.00 61.21 ATOM 62 O LYS n 7 200.847 217.748 181.530 1.00 61.21 ATOM 63 CB LYS n 7 198.405 215.777 182.386 1.00 61.21 ATOM 64 CG LYS n 7 198.590 215.454 180.910 1.00 61.21 ATOM 65 CD LYS n 7 197.296 214.968 180.278 1.00 61.21 ATOM 66 CE LYS n 7 197.487 214.664 178.801 1.00 61.21 ATOM 67 NZ LYS n 7 196.216 214.245 178.150 1.00 61.21 ATOM 68 N LYS n 8 199.440 218.801 182.936 1.00 61.57 ATOM 69 CA LYS n 8 199.753 220.124 182.398 1.00 61.57 ATOM 70 C LYS n 8 201.191 220.535 182.706 1.00 61.57 ATOM 71 O LYS n 8 201.922 220.977 181.809 1.00 61.57 ATOM 72 CB LYS n 8 198.769 221.153 182.953 1.00 61.57 ATOM 73 CG LYS n 8 198.672 222.426 182.132 1.00 61.57 ATOM 74 CD LYS n 8 197.450 223.241 182.523 1.00 61.57 ATOM 75 CE LYS n 8 197.222 224.388 181.552 1.00 61.57 ATOM 76 NZ LYS n 8 195.962 225.126 181.841 1.00 61.57 ATOM 77 N ARG n 9 201.620 220.376 183.964 1.00 63.64 ATOM 78 CA ARG n 9 203.000 220.683 184.344 1.00 63.64 ATOM 79 C ARG n 9 203.988 219.750 183.654 1.00 63.64 ATOM 80 O ARG n 9 205.082 220.170 183.249 1.00 63.64 ATOM 81 CB ARG n 9 203.152 220.585 185.862 1.00 63.64 ATOM 82 CG ARG n 9 204.526 220.958 186.395 1.00 63.64 ATOM 83 CD ARG n 9 204.595 220.756 187.898 1.00 63.64 ATOM 84 NE ARG n 9 204.336 219.366 188.255 1.00 63.64 ATOM 85 CZ ARG n 9 204.230 218.914 189.497 1.00 63.64 ATOM 86 NH1 ARG n 9 204.351 219.719 190.539 1.00 63.64 ATOM 87 NH2 ARG n 9 203.996 217.620 189.698 1.00 63.64 ATOM 88 N MET n 10 203.611 218.482 183.490 1.00 56.32 ATOM 89 CA MET n 10 204.524 217.526 182.886 1.00 56.32 ATOM 90 C MET n 10 204.600 217.732 181.375 1.00 56.32 ATOM 91 O MET n 10 205.652 217.511 180.768 1.00 56.32 ATOM 92 CB MET n 10 204.069 216.127 183.296 1.00 56.32 ATOM 93 CG MET n 10 204.549 214.943 182.525 1.00 56.32 ATOM 94 SD MET n 10 204.403 213.641 183.769 1.00 56.32 ATOM 95 CE MET n 10 205.186 212.262 182.977 1.00 56.32 ATOM 96 N ARG n 11 203.521 218.240 180.773 1.00 59.80 ATOM 97 CA ARG n 11 203.553 218.706 179.391 1.00 59.80 ATOM 98 C ARG n 11 204.427 219.948 179.245 1.00 59.80 ATOM 99 O ARG n 11 205.109 220.118 178.226 1.00 59.80 ATOM 100 CB ARG n 11 202.125 218.994 178.924 1.00 59.80 ATOM 101 CG ARG n 11 201.992 219.481 177.496 1.00 59.80 ATOM 102 CD ARG n 11 200.555 219.855 177.181 1.00 59.80 ATOM 103 NE ARG n 11 199.613 218.808 177.556 1.00 59.80 ATOM 104 CZ ARG n 11 198.295 218.944 177.517 1.00 59.80 ATOM 105 NH1 ARG n 11 197.728 220.069 177.111 1.00 59.80 ATOM 106 NH2 ARG n 11 197.527 217.927 177.893 1.00 59.80 ATOM 107 N ARG n 12 204.405 220.833 180.248 1.00 62.25 ATOM 108 CA ARG n 12 205.283 222.004 180.234 1.00 62.25 ATOM 109 C ARG n 12 206.753 221.596 180.275 1.00 62.25 ATOM 110 O ARG n 12 207.583 222.145 179.538 1.00 62.25 ATOM 111 CB ARG n 12 204.960 222.929 181.409 1.00 62.25 ATOM 112 CG ARG n 12 203.664 223.705 181.277 1.00 62.25 ATOM 113 CD ARG n 12 203.522 224.713 182.405 1.00 62.25 ATOM 114 NE ARG n 12 202.260 225.437 182.336 1.00 62.25 ATOM 115 CZ ARG n 12 201.168 225.096 183.007 1.00 62.25 ATOM 116 NH1 ARG n 12 201.153 224.047 183.812 1.00 62.25 ATOM 117 NH2 ARG n 12 200.066 225.827 182.868 1.00 62.25 ATOM 118 N LEU n 13 207.091 220.618 181.120 1.00 61.87 ATOM 119 CA LEU n 13 208.478 220.155 181.166 1.00 61.87 ATOM 120 C LEU n 13 208.833 219.352 179.915 1.00 61.87 ATOM 121 O LEU n 13 209.996 219.335 179.494 1.00 61.87 ATOM 122 CB LEU n 13 208.743 219.362 182.454 1.00 61.87 ATOM 123 CG LEU n 13 208.231 217.959 182.813 1.00 61.87 ATOM 124 CD1 LEU n 13 209.072 216.812 182.243 1.00 61.87 ATOM 125 CD2 LEU n 13 208.110 217.827 184.325 1.00 61.87 ATOM 126 N LYS n 14 207.839 218.701 179.298 1.00 61.81 ATOM 127 CA LYS n 14 208.034 218.064 177.997 1.00 61.81 ATOM 128 C LYS n 14 208.397 219.089 176.927 1.00 61.81 ATOM 129 O LYS n 14 209.305 218.864 176.118 1.00 61.81 ATOM 130 CB LYS n 14 206.766 217.312 177.590 1.00 61.81 ATOM 131 CG LYS n 14 206.881 216.535 176.287 1.00 61.81 ATOM 132 CD LYS n 14 205.654 215.665 176.056 1.00 61.81 ATOM 133 CE LYS n 14 205.916 214.208 176.378 1.00 61.81 ATOM 134 NZ LYS n 14 204.675 213.391 176.298 1.00 61.81 ATOM 135 N ARG n 15 207.694 220.225 176.914 1.00 57.70 ATOM 136 CA ARG n 15 207.990 221.275 175.943 1.00 57.70 ATOM 137 C ARG n 15 209.342 221.921 176.222 1.00 57.70 ATOM 138 O ARG n 15 210.064 222.291 175.285 1.00 57.70 ATOM 139 CB ARG n 15 206.882 222.330 175.946 1.00 57.70 ATOM 140 CG ARG n 15 206.916 223.254 174.734 1.00 57.70 ATOM 141 CD ARG n 15 205.687 224.153 174.648 1.00 57.70 ATOM 142 NE ARG n 15 205.722 225.235 175.625 1.00 57.70 ATOM 143 CZ ARG n 15 204.812 226.195 175.712 1.00 57.70 ATOM 144 NH1 ARG n 15 203.774 226.240 174.893 1.00 57.70 ATOM 145 NH2 ARG n 15 204.948 227.137 176.640 1.00 57.70 ATOM 146 N LYS n 16 209.698 222.059 177.504 1.00 62.20 ATOM 147 CA LYS n 16 211.015 222.578 177.873 1.00 62.20 ATOM 148 C LYS n 16 212.129 221.645 177.406 1.00 62.20 ATOM 149 O LYS n 16 213.150 222.096 176.869 1.00 62.20 ATOM 150 CB LYS n 16 211.083 222.790 179.387 1.00 62.20 ATOM 151 CG LYS n 16 212.451 223.212 179.902 1.00 62.20 ATOM 152 CD LYS n 16 212.449 223.382 181.413 1.00 62.20 ATOM 153 CE LYS n 16 211.512 224.498 181.842 1.00 62.20 ATOM 154 NZ LYS n 16 211.486 224.665 183.321 1.00 62.20 ATOM 155 N ARG n 17 211.936 220.333 177.580 1.00 61.39 ATOM 156 CA ARG n 17 212.906 219.358 177.090 1.00 61.39 ATOM 157 C ARG n 17 212.979 219.351 175.567 1.00 61.39 ATOM 158 O ARG n 17 214.070 219.202 175.004 1.00 61.39 ATOM 159 CB ARG n 17 212.555 217.967 177.620 1.00 61.39 ATOM 160 CG ARG n 17 213.553 216.879 177.260 1.00 61.39 ATOM 161 CD ARG n 17 213.712 215.882 178.394 1.00 61.39 ATOM 162 NE ARG n 17 212.431 215.523 178.990 1.00 61.39 ATOM 163 CZ ARG n 17 212.295 214.813 180.102 1.00 61.39 ATOM 164 NH1 ARG n 17 213.346 214.369 180.771 1.00 61.39 ATOM 165 NH2 ARG n 17 211.074 214.541 180.553 1.00 61.39 ATOM 166 N ARG n 18 211.839 219.541 174.893 1.00 65.81 ATOM 167 CA ARG n 18 211.816 219.588 173.433 1.00 65.81 ATOM 168 C ARG n 18 212.584 220.793 172.898 1.00 65.81 ATOM 169 O ARG n 18 213.392 220.663 171.970 1.00 65.81 ATOM 170 CB ARG n 18 210.372 219.616 172.933 1.00 65.81 ATOM 171 CG ARG n 18 210.241 219.682 171.420 1.00 65.81 ATOM 172 CD ARG n 18 208.816 220.000 171.004 1.00 65.81 ATOM 173 NE ARG n 18 207.845 219.173 171.709 1.00 65.81 ATOM 174 CZ ARG n 18 207.487 217.953 171.334 1.00 65.81 ATOM 175 NH1 ARG n 18 208.003 217.380 170.259 1.00 65.81 ATOM 176 NH2 ARG n 18 206.587 217.291 172.056 1.00 65.81 ATOM 177 N LYS n 19 212.363 221.974 173.485 1.00 67.93 ATOM 178 CA LYS n 19 213.081 223.156 173.012 1.00 67.93 ATOM 179 C LYS n 19 214.558 223.106 173.394 1.00 67.93 ATOM 180 O LYS n 19 215.405 223.599 172.637 1.00 67.93 ATOM 181 CB LYS n 19 212.405 224.440 173.517 1.00 67.93 ATOM 182 CG LYS n 19 212.349 224.653 175.027 1.00 67.93 ATOM 183 CD LYS n 19 213.449 225.579 175.537 1.00 67.93 ATOM 184 CE LYS n 19 213.322 225.819 177.030 1.00 67.93 ATOM 185 NZ LYS n 19 214.414 226.696 177.534 1.00 67.93 ATOM 186 N MET n 20 214.887 222.494 174.540 1.00 74.73 ATOM 187 CA MET n 20 216.286 222.324 174.924 1.00 74.73 ATOM 188 C MET n 20 217.008 221.375 173.975 1.00 74.73 ATOM 189 O MET n 20 218.158 221.619 173.591 1.00 74.73 ATOM 190 CB MET n 20 216.370 221.822 176.367 1.00 74.73 ATOM 191 CG MET n 20 217.786 221.588 176.873 1.00 74.73 ATOM 192 SD MET n 20 218.590 223.101 177.437 1.00 74.73 ATOM 193 CE MET n 20 217.821 223.321 179.039 1.00 74.73 ATOM 194 N ARG n 21 216.339 220.290 173.570 1.00 71.86 ATOM 195 CA ARG n 21 216.919 219.379 172.590 1.00 71.86 ATOM 196 C ARG n 21 217.009 220.024 171.211 1.00 71.86 ATOM 197 O ARG n 21 217.915 219.700 170.433 1.00 71.86 ATOM 198 CB ARG n 21 216.096 218.090 172.531 1.00 71.86 ATOM 199 CG ARG n 21 216.740 216.956 171.745 1.00 71.86 ATOM 200 CD ARG n 21 215.836 215.739 171.683 1.00 71.86 ATOM 201 NE ARG n 21 214.561 216.043 171.045 1.00 71.86 ATOM 202 CZ ARG n 21 213.619 215.146 170.789 1.00 71.86 ATOM 203 NH1 ARG n 21 213.779 213.869 171.096 1.00 71.86 ATOM 204 NH2 ARG n 21 212.489 215.539 170.208 1.00 71.86 ATOM 205 N GLN n 22 216.088 220.940 170.896 1.00 75.55 ATOM 206 CA GLN n 22 216.143 221.646 169.619 1.00 75.55 ATOM 207 C GLN n 22 217.332 222.600 169.562 1.00 75.55 ATOM 208 O GLN n 22 218.066 222.630 168.568 1.00 75.55 ATOM 209 CB GLN n 22 214.832 222.399 169.382 1.00 75.55 ATOM 210 CG GLN n 22 214.760 223.151 168.058 1.00 75.55 ATOM 211 CD GLN n 22 215.064 224.630 168.204 1.00 75.55 ATOM 212 OE1 GLN n 22 215.226 225.135 169.315 1.00 75.55 ATOM 213 NE2 GLN n 22 215.143 225.333 167.079 1.00 75.55 ATOM 214 N ARG n 23 217.541 223.387 170.617 1.00 78.09 ATOM 215 CA ARG n 23 218.618 224.371 170.616 1.00 78.09 ATOM 216 C ARG n 23 219.914 223.845 171.228 1.00 78.09 ATOM 217 O ARG n 23 220.860 224.621 171.400 1.00 78.09 ATOM 218 CB ARG n 23 218.179 225.650 171.337 1.00 78.09 ATOM 219 CG ARG n 23 218.023 225.528 172.841 1.00 78.09 ATOM 220 CD ARG n 23 217.071 226.592 173.354 1.00 78.09 ATOM 221 NE ARG n 23 215.809 226.577 172.623 1.00 78.09 ATOM 222 CZ ARG n 23 214.820 227.438 172.815 1.00 78.09 ATOM 223 NH1 ARG n 23 214.909 228.403 173.716 1.00 78.09 ATOM 224 NH2 ARG n 23 213.714 227.330 172.085 1.00 78.09 ATOM 225 N SER n 24 219.987 222.552 171.545 1.00 87.37 ATOM 226 CA SER n 24 221.206 221.979 172.103 1.00 87.37 ATOM 227 C SER n 24 222.298 221.750 171.064 1.00 87.37 ATOM 228 O SER n 24 223.435 221.452 171.446 1.00 87.37 ATOM 229 CB SER n 24 220.892 220.657 172.808 1.00 87.37 ATOM 230 OG SER n 24 222.067 220.071 173.341 1.00 87.37 ATOM 231 N LYS n 25 221.991 221.876 169.777 1.00 82.93 ATOM 232 CA LYS n 25 222.992 221.691 168.733 1.00 82.93 ATOM 233 C LYS n 25 223.901 222.910 168.621 1.00 82.93 ATOM 234 O LYS n 25 224.801 222.950 167.782 1.00 82.93 ATOM 235 CB LYS n 25 222.323 221.411 167.386 1.00 82.93 ATOM 236 CG LYS n 25 221.534 220.113 167.339 1.00 82.93 ATOM 237 CD LYS n 25 220.928 219.889 165.963 1.00 82.93 ATOM 238 CE LYS n 25 220.165 218.577 165.899 1.00 82.93 ATOM 239 NZ LYS n 25 219.576 218.347 164.552 1.00 82.93 TER