HEADER RIBOSOME 31-DEC-69 7SYK TITLE Structure of the HCV IRES binding to the 40S ribosomal subunit, TITLE 2 closed conformation. Structure 5(delta dII) COMPND MOL_ID: 35; COMPND 2 MOLECULE: 60s ribosomal protein l41; COMPND 3 CHAIN: n; EXPDTA ELECTRON MICROSCOPY DBREF 7SYK n 1 25 UNP A0A087WN A0A087WNH4_ 1 25 SEQRES 1 n 25 MET ARG ALA LYS TRP ARG LYS LYS ARG MET ARG ARG LEU SEQRES 2 n 25 LYS ARG LYS ARG ARG LYS MET ARG GLN ARG SER LYS ATOM 1 N MET n 1 197.470 213.548 192.414 1.00 59.37 ATOM 2 CA MET n 1 196.834 214.858 192.393 1.00 59.37 ATOM 3 C MET n 1 195.411 214.652 191.898 1.00 59.37 ATOM 4 O MET n 1 194.765 213.651 192.206 1.00 59.37 ATOM 5 CB MET n 1 197.553 215.812 191.439 1.00 59.37 ATOM 6 CG MET n 1 199.051 215.853 191.578 1.00 59.37 ATOM 7 SD MET n 1 199.746 216.925 192.828 1.00 59.37 ATOM 8 CE MET n 1 200.999 215.803 193.434 1.00 59.37 ATOM 9 N ARG n 2 194.939 215.609 191.109 1.00 55.21 ATOM 10 CA ARG n 2 193.998 215.334 190.036 1.00 55.21 ATOM 11 C ARG n 2 194.814 215.311 188.750 1.00 55.21 ATOM 12 O ARG n 2 195.796 216.052 188.626 1.00 55.21 ATOM 13 CB ARG n 2 192.874 216.372 189.974 1.00 55.21 ATOM 14 CG ARG n 2 193.315 217.809 189.795 1.00 55.21 ATOM 15 CD ARG n 2 192.112 218.731 189.710 1.00 55.21 ATOM 16 NE ARG n 2 191.297 218.477 188.528 1.00 55.21 ATOM 17 CZ ARG n 2 190.407 219.328 188.037 1.00 55.21 ATOM 18 NH1 ARG n 2 190.191 220.504 188.602 1.00 55.21 ATOM 19 NH2 ARG n 2 189.717 218.991 186.951 1.00 55.21 ATOM 20 N ALA n 3 194.432 214.441 187.811 1.00 52.47 ATOM 21 CA ALA n 3 195.329 214.106 186.706 1.00 52.47 ATOM 22 C ALA n 3 195.467 215.242 185.699 1.00 52.47 ATOM 23 O ALA n 3 196.397 215.232 184.883 1.00 52.47 ATOM 24 CB ALA n 3 194.848 212.837 186.004 1.00 52.47 ATOM 25 N LYS n 4 194.567 216.227 185.751 1.00 53.27 ATOM 26 CA LYS n 4 194.596 217.340 184.808 1.00 53.27 ATOM 27 C LYS n 4 195.831 218.213 185.006 1.00 53.27 ATOM 28 O LYS n 4 196.575 218.484 184.055 1.00 53.27 ATOM 29 CB LYS n 4 193.324 218.169 184.968 1.00 53.27 ATOM 30 CG LYS n 4 192.947 218.991 183.762 1.00 53.27 ATOM 31 CD LYS n 4 191.622 219.683 183.999 1.00 53.27 ATOM 32 CE LYS n 4 191.071 220.252 182.714 1.00 53.27 ATOM 33 NZ LYS n 4 189.782 220.965 182.928 1.00 53.27 ATOM 34 N TRP n 5 196.085 218.644 186.244 1.00 57.82 ATOM 35 CA TRP n 5 197.228 219.518 186.473 1.00 57.82 ATOM 36 C TRP n 5 198.543 218.755 186.471 1.00 57.82 ATOM 37 O TRP n 5 199.582 219.332 186.132 1.00 57.82 ATOM 38 CB TRP n 5 197.060 220.299 187.780 1.00 57.82 ATOM 39 CG TRP n 5 195.685 220.917 188.036 1.00 57.82 ATOM 40 CD1 TRP n 5 194.997 220.872 189.212 1.00 57.82 ATOM 41 CD2 TRP n 5 194.862 221.685 187.126 1.00 57.82 ATOM 42 NE1 TRP n 5 193.808 221.543 189.097 1.00 57.82 ATOM 43 CE2 TRP n 5 193.698 222.047 187.830 1.00 57.82 ATOM 44 CE3 TRP n 5 194.994 222.097 185.792 1.00 57.82 ATOM 45 CZ2 TRP n 5 192.676 222.793 187.249 1.00 57.82 ATOM 46 CZ3 TRP n 5 193.976 222.828 185.218 1.00 57.82 ATOM 47 CH2 TRP n 5 192.833 223.172 185.946 1.00 57.82 ATOM 48 N ARG n 6 198.518 217.465 186.821 1.00 55.07 ATOM 49 CA ARG n 6 199.705 216.630 186.663 1.00 55.07 ATOM 50 C ARG n 6 200.073 216.479 185.192 1.00 55.07 ATOM 51 O ARG n 6 201.251 216.562 184.823 1.00 55.07 ATOM 52 CB ARG n 6 199.479 215.260 187.302 1.00 55.07 ATOM 53 CG ARG n 6 200.708 214.368 187.256 1.00 55.07 ATOM 54 CD ARG n 6 200.425 212.969 187.784 1.00 55.07 ATOM 55 NE ARG n 6 201.464 212.016 187.407 1.00 55.07 ATOM 56 CZ ARG n 6 202.655 211.919 187.986 1.00 55.07 ATOM 57 NH1 ARG n 6 202.993 212.685 189.011 1.00 55.07 ATOM 58 NH2 ARG n 6 203.526 211.023 187.531 1.00 55.07 ATOM 59 N LYS n 7 199.067 216.280 184.333 1.00 54.87 ATOM 60 CA LYS n 7 199.315 216.214 182.897 1.00 54.87 ATOM 61 C LYS n 7 199.794 217.554 182.352 1.00 54.87 ATOM 62 O LYS n 7 200.654 217.593 181.467 1.00 54.87 ATOM 63 CB LYS n 7 198.053 215.763 182.164 1.00 54.87 ATOM 64 CG LYS n 7 197.906 214.255 182.039 1.00 54.87 ATOM 65 CD LYS n 7 196.595 213.876 181.360 1.00 54.87 ATOM 66 CE LYS n 7 196.416 214.614 180.039 1.00 54.87 ATOM 67 NZ LYS n 7 195.047 214.445 179.480 1.00 54.87 ATOM 68 N LYS n 8 199.248 218.660 182.869 1.00 57.73 ATOM 69 CA LYS n 8 199.691 219.986 182.437 1.00 57.73 ATOM 70 C LYS n 8 201.142 220.251 182.831 1.00 57.73 ATOM 71 O LYS n 8 201.921 220.792 182.034 1.00 57.73 ATOM 72 CB LYS n 8 198.771 221.058 183.021 1.00 57.73 ATOM 73 CG LYS n 8 198.996 222.450 182.454 1.00 57.73 ATOM 74 CD LYS n 8 197.815 223.363 182.747 1.00 57.73 ATOM 75 CE LYS n 8 198.082 224.785 182.278 1.00 57.73 ATOM 76 NZ LYS n 8 198.450 224.840 180.836 1.00 57.73 ATOM 77 N ARG n 9 201.526 219.857 184.050 1.00 59.20 ATOM 78 CA ARG n 9 202.911 220.003 184.486 1.00 59.20 ATOM 79 C ARG n 9 203.844 219.099 183.687 1.00 59.20 ATOM 80 O ARG n 9 204.971 219.492 183.362 1.00 59.20 ATOM 81 CB ARG n 9 203.021 219.707 185.983 1.00 59.20 ATOM 82 CG ARG n 9 204.384 220.011 186.581 1.00 59.20 ATOM 83 CD ARG n 9 204.377 219.860 188.092 1.00 59.20 ATOM 84 NE ARG n 9 204.296 218.466 188.509 1.00 59.20 ATOM 85 CZ ARG n 9 204.250 218.065 189.771 1.00 59.20 ATOM 86 NH1 ARG n 9 204.268 218.929 190.772 1.00 59.20 ATOM 87 NH2 ARG n 9 204.187 216.764 190.037 1.00 59.20 ATOM 88 N MET n 10 203.382 217.891 183.341 1.00 59.63 ATOM 89 CA MET n 10 204.190 216.995 182.518 1.00 59.63 ATOM 90 C MET n 10 204.363 217.534 181.101 1.00 59.63 ATOM 91 O MET n 10 205.433 217.384 180.505 1.00 59.63 ATOM 92 CB MET n 10 203.567 215.599 182.489 1.00 59.63 ATOM 93 CG MET n 10 203.846 214.773 183.735 1.00 59.63 ATOM 94 SD MET n 10 203.773 212.996 183.436 1.00 59.63 ATOM 95 CE MET n 10 202.324 212.878 182.391 1.00 59.63 ATOM 96 N ARG n 11 203.330 218.177 180.551 1.00 61.00 ATOM 97 CA ARG n 11 203.460 218.777 179.224 1.00 61.00 ATOM 98 C ARG n 11 204.366 220.004 179.252 1.00 61.00 ATOM 99 O ARG n 11 205.100 220.261 178.288 1.00 61.00 ATOM 100 CB ARG n 11 202.083 219.128 178.664 1.00 61.00 ATOM 101 CG ARG n 11 201.247 217.914 178.286 1.00 61.00 ATOM 102 CD ARG n 11 200.306 218.213 177.136 1.00 61.00 ATOM 103 NE ARG n 11 199.167 219.012 177.570 1.00 61.00 ATOM 104 CZ ARG n 11 197.954 218.937 177.041 1.00 61.00 ATOM 105 NH1 ARG n 11 197.677 218.089 176.065 1.00 61.00 ATOM 106 NH2 ARG n 11 196.996 219.734 177.504 1.00 61.00 ATOM 107 N ARG n 12 204.336 220.767 180.351 1.00 61.28 ATOM 108 CA ARG n 12 205.293 221.860 180.519 1.00 61.28 ATOM 109 C ARG n 12 206.721 221.332 180.626 1.00 61.28 ATOM 110 O ARG n 12 207.659 221.937 180.090 1.00 61.28 ATOM 111 CB ARG n 12 204.933 222.691 181.751 1.00 61.28 ATOM 112 CG ARG n 12 203.827 223.711 181.521 1.00 61.28 ATOM 113 CD ARG n 12 202.967 223.887 182.766 1.00 61.28 ATOM 114 NE ARG n 12 201.978 224.947 182.608 1.00 61.28 ATOM 115 CZ ARG n 12 201.694 225.850 183.536 1.00 61.28 ATOM 116 NH1 ARG n 12 202.302 225.849 184.711 1.00 61.28 ATOM 117 NH2 ARG n 12 200.777 226.779 183.279 1.00 61.28 ATOM 118 N LEU n 13 206.898 220.193 181.304 1.00 66.48 ATOM 119 CA LEU n 13 208.208 219.550 181.379 1.00 66.48 ATOM 120 C LEU n 13 208.663 219.049 180.011 1.00 66.48 ATOM 121 O LEU n 13 209.853 219.127 179.682 1.00 66.48 ATOM 122 CB LEU n 13 208.160 218.404 182.393 1.00 66.48 ATOM 123 CG LEU n 13 209.466 217.805 182.922 1.00 66.48 ATOM 124 CD1 LEU n 13 209.318 217.488 184.399 1.00 66.48 ATOM 125 CD2 LEU n 13 209.856 216.545 182.159 1.00 66.48 ATOM 126 N LYS n 14 207.730 218.522 179.209 1.00 71.62 ATOM 127 CA LYS n 14 208.042 218.110 177.840 1.00 71.62 ATOM 128 C LYS n 14 208.473 219.294 176.986 1.00 71.62 ATOM 129 O LYS n 14 209.413 219.184 176.190 1.00 71.62 ATOM 130 CB LYS n 14 206.833 217.431 177.195 1.00 71.62 ATOM 131 CG LYS n 14 206.490 216.050 177.716 1.00 71.62 ATOM 132 CD LYS n 14 205.304 215.487 176.945 1.00 71.62 ATOM 133 CE LYS n 14 204.884 214.123 177.462 1.00 71.62 ATOM 134 NZ LYS n 14 205.890 213.074 177.168 1.00 71.62 ATOM 135 N ARG n 15 207.789 220.433 177.134 1.00 65.11 ATOM 136 CA ARG n 15 208.158 221.627 176.379 1.00 65.11 ATOM 137 C ARG n 15 209.519 222.162 176.815 1.00 65.11 ATOM 138 O ARG n 15 210.311 222.613 175.979 1.00 65.11 ATOM 139 CB ARG n 15 207.079 222.698 176.533 1.00 65.11 ATOM 140 CG ARG n 15 207.203 223.846 175.543 1.00 65.11 ATOM 141 CD ARG n 15 205.845 224.439 175.204 1.00 65.11 ATOM 142 NE ARG n 15 205.266 225.170 176.324 1.00 65.11 ATOM 143 CZ ARG n 15 203.994 225.092 176.691 1.00 65.11 ATOM 144 NH1 ARG n 15 203.135 224.316 176.050 1.00 65.11 ATOM 145 NH2 ARG n 15 203.573 225.812 177.727 1.00 65.11 ATOM 146 N LYS n 16 209.815 222.096 178.118 1.00 77.93 ATOM 147 CA LYS n 16 211.127 222.504 178.622 1.00 77.93 ATOM 148 C LYS n 16 212.232 221.586 178.100 1.00 77.93 ATOM 149 O LYS n 16 213.311 222.051 177.704 1.00 77.93 ATOM 150 CB LYS n 16 211.103 222.517 180.153 1.00 77.93 ATOM 151 CG LYS n 16 212.472 222.516 180.826 1.00 77.93 ATOM 152 CD LYS n 16 212.384 222.404 182.351 1.00 77.93 ATOM 153 CE LYS n 16 211.268 223.255 182.944 1.00 77.93 ATOM 154 NZ LYS n 16 211.191 223.110 184.424 1.00 77.93 ATOM 155 N ARG n 17 211.966 220.275 178.079 1.00 82.51 ATOM 156 CA ARG n 17 212.933 219.308 177.568 1.00 82.51 ATOM 157 C ARG n 17 213.176 219.499 176.076 1.00 82.51 ATOM 158 O ARG n 17 214.315 219.408 175.607 1.00 82.51 ATOM 159 CB ARG n 17 212.449 217.886 177.851 1.00 82.51 ATOM 160 CG ARG n 17 212.962 217.300 179.151 1.00 82.51 ATOM 161 CD ARG n 17 212.980 215.782 179.094 1.00 82.51 ATOM 162 NE ARG n 17 213.550 215.288 177.846 1.00 82.51 ATOM 163 CZ ARG n 17 214.849 215.158 177.611 1.00 82.51 ATOM 164 NH1 ARG n 17 215.753 215.469 178.526 1.00 82.51 ATOM 165 NH2 ARG n 17 215.252 214.701 176.429 1.00 82.51 ATOM 166 N ARG n 18 212.113 219.775 175.315 1.00 82.82 ATOM 167 CA ARG n 18 212.264 220.016 173.883 1.00 82.82 ATOM 168 C ARG n 18 212.992 221.328 173.616 1.00 82.82 ATOM 169 O ARG n 18 213.758 221.432 172.650 1.00 82.82 ATOM 170 CB ARG n 18 210.893 220.006 173.206 1.00 82.82 ATOM 171 CG ARG n 18 210.851 219.225 171.904 1.00 82.82 ATOM 172 CD ARG n 18 209.548 219.464 171.162 1.00 82.82 ATOM 173 NE ARG n 18 208.392 219.147 171.993 1.00 82.82 ATOM 174 CZ ARG n 18 207.201 219.716 171.869 1.00 82.82 ATOM 175 NH1 ARG n 18 206.967 220.637 170.950 1.00 82.82 ATOM 176 NH2 ARG n 18 206.219 219.351 172.689 1.00 82.82 ATOM 177 N LYS n 19 212.775 222.334 174.472 1.00 94.37 ATOM 178 CA LYS n 19 213.521 223.586 174.379 1.00 94.37 ATOM 179 C LYS n 19 215.010 223.363 174.617 1.00 94.37 ATOM 180 O LYS n 19 215.852 223.888 173.879 1.00 94.37 ATOM 181 CB LYS n 19 212.961 224.598 175.381 1.00 94.37 ATOM 182 CG LYS n 19 213.636 225.962 175.354 1.00 94.37 ATOM 183 CD LYS n 19 213.375 226.694 174.051 1.00 94.37 ATOM 184 CE LYS n 19 211.922 227.128 173.943 1.00 94.37 ATOM 185 NZ LYS n 19 211.661 227.910 172.703 1.00 94.37 ATOM 186 N MET n 20 215.352 222.556 175.628 1.00103.02 ATOM 187 CA MET n 20 216.762 222.272 175.893 1.00103.02 ATOM 188 C MET n 20 217.379 221.407 174.798 1.00103.02 ATOM 189 O MET n 20 218.564 221.559 174.477 1.00103.02 ATOM 190 CB MET n 20 216.934 221.602 177.256 1.00103.02 ATOM 191 CG MET n 20 216.585 222.482 178.444 1.00103.02 ATOM 192 SD MET n 20 216.881 221.645 180.014 1.00103.02 ATOM 193 CE MET n 20 215.517 220.489 180.061 1.00103.02 ATOM 194 N ARG n 21 216.593 220.499 174.212 1.00 98.25 ATOM 195 CA ARG n 21 217.097 219.657 173.129 1.00 98.25 ATOM 196 C ARG n 21 217.358 220.470 171.865 1.00 98.25 ATOM 197 O ARG n 21 218.372 220.272 171.187 1.00 98.25 ATOM 198 CB ARG n 21 216.113 218.523 172.843 1.00 98.25 ATOM 199 CG ARG n 21 216.170 217.368 173.831 1.00 98.25 ATOM 200 CD ARG n 21 215.570 216.110 173.226 1.00 98.25 ATOM 201 NE ARG n 21 214.143 216.005 173.512 1.00 98.25 ATOM 202 CZ ARG n 21 213.344 215.072 173.013 1.00 98.25 ATOM 203 NH1 ARG n 21 213.797 214.142 172.189 1.00 98.25 ATOM 204 NH2 ARG n 21 212.058 215.071 173.351 1.00 98.25 ATOM 205 N GLN n 22 216.450 221.392 171.528 1.00109.93 ATOM 206 CA GLN n 22 216.665 222.211 170.339 1.00109.93 ATOM 207 C GLN n 22 217.696 223.308 170.584 1.00109.93 ATOM 208 O GLN n 22 218.286 223.821 169.627 1.00109.93 ATOM 209 CB GLN n 22 215.341 222.802 169.849 1.00109.93 ATOM 210 CG GLN n 22 214.766 223.925 170.694 1.00109.93 ATOM 211 CD GLN n 22 213.267 224.060 170.518 1.00109.93 ATOM 212 OE1 GLN n 22 212.635 224.918 171.134 1.00109.93 ATOM 213 NE2 GLN n 22 212.689 223.207 169.684 1.00109.93 ATOM 214 N ARG n 23 217.929 223.683 171.844 1.00119.19 ATOM 215 CA ARG n 23 219.018 224.594 172.167 1.00119.19 ATOM 216 C ARG n 23 220.377 223.902 172.142 1.00119.19 ATOM 217 O ARG n 23 221.362 224.510 171.707 1.00119.19 ATOM 218 CB ARG n 23 218.748 225.241 173.534 1.00119.19 ATOM 219 CG ARG n 23 219.916 225.988 174.168 1.00119.19 ATOM 220 CD ARG n 23 219.452 226.868 175.317 1.00119.19 ATOM 221 NE ARG n 23 220.450 226.957 176.375 1.00119.19 ATOM 222 CZ ARG n 23 220.406 227.827 177.374 1.00119.19 ATOM 223 NH1 ARG n 23 219.422 228.706 177.482 1.00119.19 ATOM 224 NH2 ARG n 23 221.373 227.818 178.287 1.00119.19 ATOM 225 N SER n 24 220.441 222.627 172.533 1.00129.28 ATOM 226 CA SER n 24 221.683 221.864 172.550 1.00129.28 ATOM 227 C SER n 24 222.190 221.485 171.162 1.00129.28 ATOM 228 O SER n 24 223.304 220.959 171.056 1.00129.28 ATOM 229 CB SER n 24 221.504 220.589 173.383 1.00129.28 ATOM 230 OG SER n 24 222.673 219.790 173.350 1.00129.28 ATOM 231 N LYS n 25 221.404 221.715 170.111 1.00132.95 ATOM 232 CA LYS n 25 221.814 221.421 168.739 1.00132.95 ATOM 233 C LYS n 25 222.986 222.291 168.291 1.00132.95 ATOM 234 O LYS n 25 223.760 221.903 167.416 1.00132.95 ATOM 235 CB LYS n 25 220.637 221.616 167.778 1.00132.95 ATOM 236 CG LYS n 25 219.443 220.714 168.044 1.00132.95 ATOM 237 CD LYS n 25 219.829 219.247 167.973 1.00132.95 ATOM 238 CE LYS n 25 218.638 218.351 168.268 1.00132.95 ATOM 239 NZ LYS n 25 219.002 216.909 168.212 1.00132.95 TER