HEADER RIBOSOME 31-DEC-69 7SYL TITLE Structure of the HCV IRES bound to the 40S ribosomal subunit, closed TITLE 2 conformation. Structure 6(delta dII) COMPND MOL_ID: 35; COMPND 2 MOLECULE: 60s ribosomal protein l41; COMPND 3 CHAIN: n; EXPDTA ELECTRON MICROSCOPY DBREF 7SYL n 1 25 UNP A0A087WN A0A087WNH4_ 1 25 SEQRES 1 n 25 MET ARG ALA LYS TRP ARG LYS LYS ARG MET ARG ARG LEU SEQRES 2 n 25 LYS ARG LYS ARG ARG LYS MET ARG GLN ARG SER LYS ATOM 1 N MET n 1 195.351 214.480 194.291 1.00 51.56 ATOM 2 CA MET n 1 196.299 214.878 193.262 1.00 51.56 ATOM 3 C MET n 1 195.696 214.549 191.902 1.00 51.56 ATOM 4 O MET n 1 195.944 213.478 191.353 1.00 51.56 ATOM 5 CB MET n 1 197.634 214.157 193.448 1.00 51.56 ATOM 6 CG MET n 1 198.807 214.681 192.614 1.00 51.56 ATOM 7 SD MET n 1 199.018 216.479 192.578 1.00 51.56 ATOM 8 CE MET n 1 198.360 216.929 190.977 1.00 51.56 ATOM 9 N ARG n 2 194.891 215.470 191.375 1.00 36.44 ATOM 10 CA ARG n 2 194.129 215.204 190.162 1.00 36.44 ATOM 11 C ARG n 2 195.035 215.181 188.937 1.00 36.44 ATOM 12 O ARG n 2 196.078 215.836 188.899 1.00 36.44 ATOM 13 CB ARG n 2 193.028 216.247 189.994 1.00 36.44 ATOM 14 CG ARG n 2 193.521 217.674 189.939 1.00 36.44 ATOM 15 CD ARG n 2 192.350 218.627 189.827 1.00 36.44 ATOM 16 NE ARG n 2 191.782 218.655 188.485 1.00 36.44 ATOM 17 CZ ARG n 2 190.877 219.533 188.074 1.00 36.44 ATOM 18 NH1 ARG n 2 190.418 220.478 188.877 1.00 36.44 ATOM 19 NH2 ARG n 2 190.420 219.459 186.829 1.00 36.44 ATOM 20 N ALA n 3 194.622 214.417 187.925 1.00 31.51 ATOM 21 CA ALA n 3 195.527 214.088 186.831 1.00 31.51 ATOM 22 C ALA n 3 195.710 215.243 185.856 1.00 31.51 ATOM 23 O ALA n 3 196.717 215.284 185.142 1.00 31.51 ATOM 24 CB ALA n 3 195.018 212.853 186.091 1.00 31.51 ATOM 25 N LYS n 4 194.762 216.183 185.811 1.00 32.07 ATOM 26 CA LYS n 4 194.734 217.171 184.733 1.00 32.07 ATOM 27 C LYS n 4 195.875 218.176 184.849 1.00 32.07 ATOM 28 O LYS n 4 196.602 218.423 183.877 1.00 32.07 ATOM 29 CB LYS n 4 193.389 217.889 184.730 1.00 32.07 ATOM 30 CG LYS n 4 193.220 218.883 183.609 1.00 32.07 ATOM 31 CD LYS n 4 191.843 219.511 183.649 1.00 32.07 ATOM 32 CE LYS n 4 191.701 220.545 182.559 1.00 32.07 ATOM 33 NZ LYS n 4 190.360 221.182 182.574 1.00 32.07 ATOM 34 N TRP n 5 196.067 218.753 186.039 1.00 34.26 ATOM 35 CA TRP n 5 197.158 219.707 186.199 1.00 34.26 ATOM 36 C TRP n 5 198.509 219.006 186.225 1.00 34.26 ATOM 37 O TRP n 5 199.521 219.607 185.845 1.00 34.26 ATOM 38 CB TRP n 5 196.972 220.549 187.465 1.00 34.26 ATOM 39 CG TRP n 5 195.572 221.056 187.749 1.00 34.26 ATOM 40 CD1 TRP n 5 194.900 220.927 188.924 1.00 34.26 ATOM 41 CD2 TRP n 5 194.700 221.796 186.873 1.00 34.26 ATOM 42 NE1 TRP n 5 193.668 221.520 188.839 1.00 34.26 ATOM 43 CE2 TRP n 5 193.518 222.058 187.591 1.00 34.26 ATOM 44 CE3 TRP n 5 194.801 222.258 185.556 1.00 34.26 ATOM 45 CZ2 TRP n 5 192.447 222.755 187.039 1.00 34.26 ATOM 46 CZ3 TRP n 5 193.731 222.946 185.010 1.00 34.26 ATOM 47 CH2 TRP n 5 192.572 223.189 185.751 1.00 34.26 ATOM 48 N ARG n 6 198.539 217.739 186.653 1.00 32.93 ATOM 49 CA ARG n 6 199.762 216.947 186.561 1.00 32.93 ATOM 50 C ARG n 6 200.174 216.743 185.111 1.00 32.93 ATOM 51 O ARG n 6 201.353 216.885 184.768 1.00 32.93 ATOM 52 CB ARG n 6 199.571 215.598 187.252 1.00 32.93 ATOM 53 CG ARG n 6 200.867 214.839 187.497 1.00 32.93 ATOM 54 CD ARG n 6 200.656 213.685 188.462 1.00 32.93 ATOM 55 NE ARG n 6 199.938 212.579 187.841 1.00 32.93 ATOM 56 CZ ARG n 6 200.505 211.448 187.446 1.00 32.93 ATOM 57 NH1 ARG n 6 201.798 211.227 187.615 1.00 32.93 ATOM 58 NH2 ARG n 6 199.756 210.513 186.869 1.00 32.93 ATOM 59 N LYS n 7 199.209 216.444 184.239 1.00 39.16 ATOM 60 CA LYS n 7 199.519 216.295 182.822 1.00 39.16 ATOM 61 C LYS n 7 199.857 217.634 182.181 1.00 39.16 ATOM 62 O LYS n 7 200.658 217.681 181.245 1.00 39.16 ATOM 63 CB LYS n 7 198.363 215.621 182.086 1.00 39.16 ATOM 64 CG LYS n 7 198.169 214.159 182.441 1.00 39.16 ATOM 65 CD LYS n 7 197.217 213.479 181.475 1.00 39.16 ATOM 66 CE LYS n 7 197.972 212.656 180.448 1.00 39.16 ATOM 67 NZ LYS n 7 197.276 212.623 179.133 1.00 39.16 ATOM 68 N LYS n 8 199.271 218.732 182.672 1.00 40.59 ATOM 69 CA LYS n 8 199.648 220.052 182.160 1.00 40.59 ATOM 70 C LYS n 8 201.091 220.402 182.520 1.00 40.59 ATOM 71 O LYS n 8 201.848 220.903 181.676 1.00 40.59 ATOM 72 CB LYS n 8 198.699 221.125 182.691 1.00 40.59 ATOM 73 CG LYS n 8 199.014 222.516 182.163 1.00 40.59 ATOM 74 CD LYS n 8 198.266 223.593 182.921 1.00 40.59 ATOM 75 CE LYS n 8 196.768 223.435 182.771 1.00 40.59 ATOM 76 NZ LYS n 8 196.045 224.581 183.381 1.00 40.59 ATOM 77 N ARG n 9 201.488 220.124 183.767 1.00 42.85 ATOM 78 CA ARG n 9 202.877 220.298 184.188 1.00 42.85 ATOM 79 C ARG n 9 203.811 219.389 183.400 1.00 42.85 ATOM 80 O ARG n 9 204.931 219.784 183.050 1.00 42.85 ATOM 81 CB ARG n 9 202.998 220.007 185.683 1.00 42.85 ATOM 82 CG ARG n 9 204.386 220.204 186.258 1.00 42.85 ATOM 83 CD ARG n 9 204.656 219.206 187.369 1.00 42.85 ATOM 84 NE ARG n 9 204.048 219.602 188.631 1.00 42.85 ATOM 85 CZ ARG n 9 204.545 219.303 189.822 1.00 42.85 ATOM 86 NH1 ARG n 9 205.662 218.608 189.949 1.00 42.85 ATOM 87 NH2 ARG n 9 203.902 219.708 190.913 1.00 42.85 ATOM 88 N MET n 10 203.357 218.169 183.108 1.00 43.62 ATOM 89 CA MET n 10 204.152 217.217 182.344 1.00 43.62 ATOM 90 C MET n 10 204.347 217.688 180.906 1.00 43.62 ATOM 91 O MET n 10 205.438 217.540 180.341 1.00 43.62 ATOM 92 CB MET n 10 203.462 215.856 182.403 1.00 43.62 ATOM 93 CG MET n 10 203.888 215.016 183.601 1.00 43.62 ATOM 94 SD MET n 10 203.431 213.280 183.478 1.00 43.62 ATOM 95 CE MET n 10 204.243 212.839 181.959 1.00 43.62 ATOM 96 N ARG n 11 203.305 218.278 180.311 1.00 46.78 ATOM 97 CA ARG n 11 203.424 218.865 178.979 1.00 46.78 ATOM 98 C ARG n 11 204.364 220.063 178.981 1.00 46.78 ATOM 99 O ARG n 11 205.134 220.246 178.033 1.00 46.78 ATOM 100 CB ARG n 11 202.051 219.279 178.453 1.00 46.78 ATOM 101 CG ARG n 11 201.143 218.122 178.072 1.00 46.78 ATOM 102 CD ARG n 11 199.689 218.564 178.063 1.00 46.78 ATOM 103 NE ARG n 11 198.790 217.534 178.569 1.00 46.78 ATOM 104 CZ ARG n 11 198.262 216.568 177.831 1.00 46.78 ATOM 105 NH1 ARG n 11 198.538 216.453 176.543 1.00 46.78 ATOM 106 NH2 ARG n 11 197.434 215.698 178.399 1.00 46.78 ATOM 107 N ARG n 12 204.312 220.889 180.035 1.00 51.02 ATOM 108 CA ARG n 12 205.244 222.012 180.150 1.00 51.02 ATOM 109 C ARG n 12 206.687 221.535 180.274 1.00 51.02 ATOM 110 O ARG n 12 207.593 222.111 179.659 1.00 51.02 ATOM 111 CB ARG n 12 204.880 222.889 181.347 1.00 51.02 ATOM 112 CG ARG n 12 203.579 223.652 181.208 1.00 51.02 ATOM 113 CD ARG n 12 203.491 224.754 182.248 1.00 51.02 ATOM 114 NE ARG n 12 203.196 224.226 183.574 1.00 51.02 ATOM 115 CZ ARG n 12 202.503 224.871 184.502 1.00 51.02 ATOM 116 NH1 ARG n 12 202.004 226.075 184.280 1.00 51.02 ATOM 117 NH2 ARG n 12 202.306 224.293 185.683 1.00 51.02 ATOM 118 N LEU n 13 206.915 220.477 181.056 1.00 64.55 ATOM 119 CA LEU n 13 208.261 219.932 181.213 1.00 64.55 ATOM 120 C LEU n 13 208.771 219.312 179.915 1.00 64.55 ATOM 121 O LEU n 13 209.946 219.480 179.563 1.00 64.55 ATOM 122 CB LEU n 13 208.279 218.905 182.344 1.00 64.55 ATOM 123 CG LEU n 13 209.626 218.256 182.668 1.00 64.55 ATOM 124 CD1 LEU n 13 210.537 219.243 183.376 1.00 64.55 ATOM 125 CD2 LEU n 13 209.433 217.001 183.507 1.00 64.55 ATOM 126 N LYS n 14 207.900 218.602 179.187 1.00 71.44 ATOM 127 CA LYS n 14 208.287 218.041 177.894 1.00 71.44 ATOM 128 C LYS n 14 208.580 219.145 176.887 1.00 71.44 ATOM 129 O LYS n 14 209.503 219.020 176.071 1.00 71.44 ATOM 130 CB LYS n 14 207.185 217.115 177.369 1.00 71.44 ATOM 131 CG LYS n 14 207.529 216.336 176.088 1.00 71.44 ATOM 132 CD LYS n 14 206.913 216.948 174.831 1.00 71.44 ATOM 133 CE LYS n 14 205.406 216.813 174.815 1.00 71.44 ATOM 134 NZ LYS n 14 204.812 217.427 173.597 1.00 71.44 ATOM 135 N ARG n 15 207.800 220.232 176.931 1.00 71.46 ATOM 136 CA ARG n 15 208.053 221.390 176.082 1.00 71.46 ATOM 137 C ARG n 15 209.402 222.015 176.405 1.00 71.46 ATOM 138 O ARG n 15 210.145 222.410 175.500 1.00 71.46 ATOM 139 CB ARG n 15 206.930 222.416 176.252 1.00 71.46 ATOM 140 CG ARG n 15 206.759 223.353 175.071 1.00 71.46 ATOM 141 CD ARG n 15 205.319 223.836 174.936 1.00 71.46 ATOM 142 NE ARG n 15 205.081 225.095 175.634 1.00 71.46 ATOM 143 CZ ARG n 15 204.066 225.912 175.382 1.00 71.46 ATOM 144 NH1 ARG n 15 203.164 225.630 174.457 1.00 71.46 ATOM 145 NH2 ARG n 15 203.954 227.042 176.074 1.00 71.46 ATOM 146 N LYS n 16 209.736 222.088 177.698 1.00 86.66 ATOM 147 CA LYS n 16 211.027 222.622 178.129 1.00 86.66 ATOM 148 C LYS n 16 212.186 221.768 177.622 1.00 86.66 ATOM 149 O LYS n 16 213.177 222.298 177.107 1.00 86.66 ATOM 150 CB LYS n 16 211.063 222.719 179.655 1.00 86.66 ATOM 151 CG LYS n 16 212.416 223.108 180.228 1.00 86.66 ATOM 152 CD LYS n 16 212.418 223.023 181.743 1.00 86.66 ATOM 153 CE LYS n 16 211.402 223.971 182.353 1.00 86.66 ATOM 154 NZ LYS n 16 211.390 223.888 183.837 1.00 86.66 ATOM 155 N ARG n 17 212.065 220.440 177.740 1.00 85.86 ATOM 156 CA ARG n 17 213.115 219.545 177.248 1.00 85.86 ATOM 157 C ARG n 17 213.253 219.618 175.731 1.00 85.86 ATOM 158 O ARG n 17 214.373 219.603 175.201 1.00 85.86 ATOM 159 CB ARG n 17 212.841 218.104 177.680 1.00 85.86 ATOM 160 CG ARG n 17 212.742 217.902 179.177 1.00 85.86 ATOM 161 CD ARG n 17 212.931 216.450 179.551 1.00 85.86 ATOM 162 NE ARG n 17 211.848 215.980 180.403 1.00 85.86 ATOM 163 CZ ARG n 17 211.650 214.712 180.731 1.00 85.86 ATOM 164 NH1 ARG n 17 212.459 213.755 180.308 1.00 85.86 ATOM 165 NH2 ARG n 17 210.613 214.395 181.500 1.00 85.86 ATOM 166 N ARG n 18 212.126 219.719 175.021 1.00 91.96 ATOM 167 CA ARG n 18 212.158 219.779 173.563 1.00 91.96 ATOM 168 C ARG n 18 212.774 221.084 173.074 1.00 91.96 ATOM 169 O ARG n 18 213.618 221.080 172.170 1.00 91.96 ATOM 170 CB ARG n 18 210.746 219.604 173.008 1.00 91.96 ATOM 171 CG ARG n 18 210.671 219.459 171.499 1.00 91.96 ATOM 172 CD ARG n 18 209.239 219.224 171.045 1.00 91.96 ATOM 173 NE ARG n 18 208.427 220.430 171.139 1.00 91.96 ATOM 174 CZ ARG n 18 207.511 220.653 172.072 1.00 91.96 ATOM 175 NH1 ARG n 18 207.267 219.772 173.026 1.00 91.96 ATOM 176 NH2 ARG n 18 206.824 221.790 172.047 1.00 91.96 ATOM 177 N LYS n 19 212.392 222.210 173.685 1.00112.28 ATOM 178 CA LYS n 19 212.967 223.488 173.281 1.00112.28 ATOM 179 C LYS n 19 214.432 223.583 173.695 1.00112.28 ATOM 180 O LYS n 19 215.238 224.195 172.987 1.00112.28 ATOM 181 CB LYS n 19 212.139 224.653 173.844 1.00112.28 ATOM 182 CG LYS n 19 212.236 224.895 175.349 1.00112.28 ATOM 183 CD LYS n 19 211.319 226.014 175.821 1.00112.28 ATOM 184 CE LYS n 19 209.857 225.667 175.625 1.00112.28 ATOM 185 NZ LYS n 19 208.967 226.717 176.180 1.00112.28 ATOM 186 N MET n 20 214.809 222.915 174.793 1.00123.96 ATOM 187 CA MET n 20 216.203 222.898 175.223 1.00123.96 ATOM 188 C MET n 20 217.066 222.113 174.245 1.00123.96 ATOM 189 O MET n 20 218.166 222.547 173.890 1.00123.96 ATOM 190 CB MET n 20 216.293 222.319 176.641 1.00123.96 ATOM 191 CG MET n 20 217.682 222.280 177.302 1.00123.96 ATOM 192 SD MET n 20 218.789 220.908 176.887 1.00123.96 ATOM 193 CE MET n 20 217.991 219.559 177.750 1.00123.96 ATOM 194 N ARG n 21 216.582 220.953 173.792 1.00128.82 ATOM 195 CA ARG n 21 217.389 220.155 172.874 1.00128.82 ATOM 196 C ARG n 21 217.383 220.742 171.466 1.00128.82 ATOM 197 O ARG n 21 218.329 220.525 170.701 1.00128.82 ATOM 198 CB ARG n 21 216.920 218.698 172.865 1.00128.82 ATOM 199 CG ARG n 21 215.576 218.441 172.212 1.00128.82 ATOM 200 CD ARG n 21 215.427 216.978 171.826 1.00128.82 ATOM 201 NE ARG n 21 216.039 216.083 172.803 1.00128.82 ATOM 202 CZ ARG n 21 215.448 215.666 173.914 1.00128.82 ATOM 203 NH1 ARG n 21 214.222 216.048 174.232 1.00128.82 ATOM 204 NH2 ARG n 21 216.100 214.838 174.725 1.00128.82 ATOM 205 N GLN n 22 216.337 221.493 171.100 1.00142.61 ATOM 206 CA GLN n 22 216.355 222.142 169.792 1.00142.61 ATOM 207 C GLN n 22 217.242 223.383 169.801 1.00142.61 ATOM 208 O GLN n 22 217.903 223.685 168.800 1.00142.61 ATOM 209 CB GLN n 22 214.934 222.485 169.341 1.00142.61 ATOM 210 CG GLN n 22 214.074 221.273 168.943 1.00142.61 ATOM 211 CD GLN n 22 214.294 220.779 167.515 1.00142.61 ATOM 212 OE1 GLN n 22 215.425 220.600 167.063 1.00142.61 ATOM 213 NE2 GLN n 22 213.197 220.546 166.804 1.00142.61 ATOM 214 N ARG n 23 217.280 224.112 170.921 1.00148.43 ATOM 215 CA ARG n 23 218.197 225.239 171.043 1.00148.43 ATOM 216 C ARG n 23 219.627 224.799 171.327 1.00148.43 ATOM 217 O ARG n 23 220.553 225.595 171.141 1.00148.43 ATOM 218 CB ARG n 23 217.721 226.188 172.145 1.00148.43 ATOM 219 CG ARG n 23 216.672 227.197 171.704 1.00148.43 ATOM 220 CD ARG n 23 215.637 227.441 172.791 1.00148.43 ATOM 221 NE ARG n 23 216.225 227.410 174.125 1.00148.43 ATOM 222 CZ ARG n 23 215.529 227.477 175.252 1.00148.43 ATOM 223 NH1 ARG n 23 214.219 227.646 175.243 1.00148.43 ATOM 224 NH2 ARG n 23 216.165 227.377 176.415 1.00148.43 ATOM 225 N SER n 24 219.827 223.557 171.764 1.00170.26 ATOM 226 CA SER n 24 221.151 223.043 172.088 1.00170.26 ATOM 227 C SER n 24 221.896 222.506 170.875 1.00170.26 ATOM 228 O SER n 24 223.037 222.056 171.022 1.00170.26 ATOM 229 CB SER n 24 221.040 221.945 173.150 1.00170.26 ATOM 230 OG SER n 24 222.301 221.354 173.411 1.00170.26 ATOM 231 N LYS n 25 221.286 222.533 169.695 1.00180.26 ATOM 232 CA LYS n 25 221.948 222.090 168.474 1.00180.26 ATOM 233 C LYS n 25 223.006 223.098 168.027 1.00180.26 ATOM 234 O LYS n 25 224.154 223.047 168.470 1.00180.26 ATOM 235 CB LYS n 25 220.923 221.874 167.358 1.00180.26 ATOM 236 CG LYS n 25 219.836 220.865 167.692 1.00180.26 ATOM 237 CD LYS n 25 220.413 219.479 167.933 1.00180.26 ATOM 238 CE LYS n 25 219.309 218.458 168.165 1.00180.26 ATOM 239 NZ LYS n 25 219.850 217.088 168.381 1.00180.26 TER