HEADER RIBOSOME 31-DEC-69 7SYS TITLE Structure of the delta dII IRES eIF2-containing 48S initiation TITLE 2 complex, closed conformation. Structure 12(delta dII). COMPND MOL_ID: 37; COMPND 2 MOLECULE: eL41; COMPND 3 CHAIN: n; EXPDTA ELECTRON MICROSCOPY DBREF 7SYS n 1 25 UNP A0A087WN A0A087WNH4_ 1 25 SEQRES 1 n 25 MET ARG ALA LYS TRP ARG LYS LYS ARG MET ARG ARG LEU SEQRES 2 n 25 LYS ARG LYS ARG ARG LYS MET ARG GLN ARG SER LYS ATOM 1 N MET n 1 199.042 223.502 185.542 1.00 23.83 ATOM 2 CA MET n 1 198.951 224.237 184.287 1.00 23.83 ATOM 3 C MET n 1 198.102 223.489 183.266 1.00 23.83 ATOM 4 O MET n 1 198.286 222.291 183.053 1.00 23.83 ATOM 5 CB MET n 1 200.346 224.492 183.714 1.00 23.83 ATOM 6 CG MET n 1 200.348 225.358 182.466 1.00 23.83 ATOM 7 SD MET n 1 201.998 225.652 181.814 1.00 23.83 ATOM 8 CE MET n 1 202.648 226.767 183.034 1.00 23.83 ATOM 9 N ARG n 2 197.170 224.202 182.638 1.00 21.60 ATOM 10 CA ARG n 2 196.364 223.615 181.579 1.00 21.60 ATOM 11 C ARG n 2 197.194 223.449 180.310 1.00 21.60 ATOM 12 O ARG n 2 198.265 224.044 180.158 1.00 21.60 ATOM 13 CB ARG n 2 195.129 224.476 181.310 1.00 21.60 ATOM 14 CG ARG n 2 195.435 225.863 180.783 1.00 21.60 ATOM 15 CD ARG n 2 194.192 226.739 180.778 1.00 21.60 ATOM 16 NE ARG n 2 193.297 226.450 179.665 1.00 21.60 ATOM 17 CZ ARG n 2 192.275 227.218 179.311 1.00 21.60 ATOM 18 NH1 ARG n 2 191.995 228.338 179.957 1.00 21.60 ATOM 19 NH2 ARG n 2 191.516 226.854 178.281 1.00 21.60 ATOM 20 N ALA n 3 196.687 222.621 179.392 1.00 27.24 ATOM 21 CA ALA n 3 197.467 222.238 178.219 1.00 27.24 ATOM 22 C ALA n 3 197.585 223.370 177.205 1.00 27.24 ATOM 23 O ALA n 3 198.526 223.380 176.402 1.00 27.24 ATOM 24 CB ALA n 3 196.852 221.004 177.561 1.00 27.24 ATOM 25 N LYS n 4 196.652 224.326 177.235 1.00 21.05 ATOM 26 CA LYS n 4 196.650 225.420 176.267 1.00 21.05 ATOM 27 C LYS n 4 197.855 226.336 176.453 1.00 21.05 ATOM 28 O LYS n 4 198.592 226.620 175.500 1.00 21.05 ATOM 29 CB LYS n 4 195.352 226.216 176.400 1.00 21.05 ATOM 30 CG LYS n 4 194.745 226.677 175.092 1.00 21.05 ATOM 31 CD LYS n 4 193.638 227.681 175.355 1.00 21.05 ATOM 32 CE LYS n 4 192.689 227.781 174.180 1.00 21.05 ATOM 33 NZ LYS n 4 191.940 229.067 174.189 1.00 21.05 ATOM 34 N TRP n 5 198.088 226.791 177.684 1.00 22.09 ATOM 35 CA TRP n 5 199.192 227.714 177.906 1.00 22.09 ATOM 36 C TRP n 5 200.535 226.996 177.931 1.00 22.09 ATOM 37 O TRP n 5 201.562 227.607 177.609 1.00 22.09 ATOM 38 CB TRP n 5 198.960 228.518 179.189 1.00 22.09 ATOM 39 CG TRP n 5 197.547 229.107 179.393 1.00 22.09 ATOM 40 CD1 TRP n 5 196.868 229.149 180.576 1.00 22.09 ATOM 41 CD2 TRP n 5 196.688 229.768 178.426 1.00 22.09 ATOM 42 NE1 TRP n 5 195.651 229.758 180.413 1.00 22.09 ATOM 43 CE2 TRP n 5 195.514 230.147 179.108 1.00 22.09 ATOM 44 CE3 TRP n 5 196.793 230.069 177.059 1.00 22.09 ATOM 45 CZ2 TRP n 5 194.459 230.801 178.475 1.00 22.09 ATOM 46 CZ3 TRP n 5 195.741 230.710 176.434 1.00 22.09 ATOM 47 CH2 TRP n 5 194.590 231.070 177.142 1.00 22.09 ATOM 48 N ARG n 6 200.553 225.697 178.258 1.00 24.58 ATOM 49 CA ARG n 6 201.796 224.948 178.101 1.00 24.58 ATOM 50 C ARG n 6 202.124 224.741 176.627 1.00 24.58 ATOM 51 O ARG n 6 203.301 224.768 176.253 1.00 24.58 ATOM 52 CB ARG n 6 201.742 223.615 178.868 1.00 24.58 ATOM 53 CG ARG n 6 201.185 222.395 178.152 1.00 24.58 ATOM 54 CD ARG n 6 201.258 221.161 179.038 1.00 24.58 ATOM 55 NE ARG n 6 202.629 220.699 179.220 1.00 24.58 ATOM 56 CZ ARG n 6 203.235 219.822 178.432 1.00 24.58 ATOM 57 NH1 ARG n 6 202.619 219.285 177.391 1.00 24.58 ATOM 58 NH2 ARG n 6 204.492 219.473 178.695 1.00 24.58 ATOM 59 N LYS n 7 201.104 224.620 175.767 1.00 23.32 ATOM 60 CA LYS n 7 201.362 224.553 174.333 1.00 23.32 ATOM 61 C LYS n 7 201.812 225.906 173.796 1.00 23.32 ATOM 62 O LYS n 7 202.655 225.969 172.896 1.00 23.32 ATOM 63 CB LYS n 7 200.118 224.062 173.593 1.00 23.32 ATOM 64 CG LYS n 7 200.359 223.771 172.120 1.00 23.32 ATOM 65 CD LYS n 7 199.209 223.011 171.495 1.00 23.32 ATOM 66 CE LYS n 7 198.046 223.934 171.190 1.00 23.32 ATOM 67 NZ LYS n 7 197.012 223.252 170.368 1.00 23.32 ATOM 68 N LYS n 8 201.270 226.997 174.347 1.00 24.50 ATOM 69 CA LYS n 8 201.705 228.333 173.937 1.00 24.50 ATOM 70 C LYS n 8 203.157 228.599 174.332 1.00 24.50 ATOM 71 O LYS n 8 203.936 229.146 173.537 1.00 24.50 ATOM 72 CB LYS n 8 200.783 229.392 174.538 1.00 24.50 ATOM 73 CG LYS n 8 200.863 230.734 173.839 1.00 24.50 ATOM 74 CD LYS n 8 199.832 231.706 174.379 1.00 24.50 ATOM 75 CE LYS n 8 199.990 233.071 173.737 1.00 24.50 ATOM 76 NZ LYS n 8 199.639 233.045 172.292 1.00 24.50 ATOM 77 N ARG n 9 203.544 228.201 175.548 1.00 25.60 ATOM 78 CA ARG n 9 204.935 228.343 175.974 1.00 25.60 ATOM 79 C ARG n 9 205.856 227.419 175.182 1.00 25.60 ATOM 80 O ARG n 9 206.998 227.788 174.872 1.00 25.60 ATOM 81 CB ARG n 9 205.052 228.071 177.473 1.00 25.60 ATOM 82 CG ARG n 9 206.194 228.808 178.158 1.00 25.60 ATOM 83 CD ARG n 9 206.071 228.725 179.673 1.00 25.60 ATOM 84 NE ARG n 9 206.200 227.356 180.158 1.00 25.60 ATOM 85 CZ ARG n 9 206.118 227.002 181.433 1.00 25.60 ATOM 86 NH1 ARG n 9 205.901 227.893 182.387 1.00 25.60 ATOM 87 NH2 ARG n 9 206.252 225.720 181.759 1.00 25.60 ATOM 88 N MET n 10 205.366 226.226 174.827 1.00 27.37 ATOM 89 CA MET n 10 206.136 225.317 173.985 1.00 27.37 ATOM 90 C MET n 10 206.350 225.897 172.592 1.00 27.37 ATOM 91 O MET n 10 207.442 225.777 172.029 1.00 27.37 ATOM 92 CB MET n 10 205.428 223.966 173.903 1.00 27.37 ATOM 93 CG MET n 10 206.341 222.805 173.561 1.00 27.37 ATOM 94 SD MET n 10 207.337 222.289 174.974 1.00 27.37 ATOM 95 CE MET n 10 206.125 222.338 176.294 1.00 27.37 ATOM 96 N ARG n 11 205.327 226.553 172.035 1.00 27.63 ATOM 97 CA ARG n 11 205.458 227.189 170.725 1.00 27.63 ATOM 98 C ARG n 11 206.409 228.378 170.776 1.00 27.63 ATOM 99 O ARG n 11 207.149 228.631 169.817 1.00 27.63 ATOM 100 CB ARG n 11 204.086 227.628 170.214 1.00 27.63 ATOM 101 CG ARG n 11 203.218 226.494 169.699 1.00 27.63 ATOM 102 CD ARG n 11 202.384 226.932 168.512 1.00 27.63 ATOM 103 NE ARG n 11 201.461 225.890 168.079 1.00 27.63 ATOM 104 CZ ARG n 11 200.188 225.820 168.443 1.00 27.63 ATOM 105 NH1 ARG n 11 199.649 226.722 169.246 1.00 27.63 ATOM 106 NH2 ARG n 11 199.437 224.822 167.989 1.00 27.63 ATOM 107 N ARG n 12 206.397 229.124 171.886 1.00 32.09 ATOM 108 CA ARG n 12 207.370 230.201 172.062 1.00 32.09 ATOM 109 C ARG n 12 208.793 229.654 172.155 1.00 32.09 ATOM 110 O ARG n 12 209.737 230.267 171.637 1.00 32.09 ATOM 111 CB ARG n 12 207.019 231.032 173.296 1.00 32.09 ATOM 112 CG ARG n 12 205.873 232.011 173.065 1.00 32.09 ATOM 113 CD ARG n 12 205.355 232.592 174.371 1.00 32.09 ATOM 114 NE ARG n 12 204.358 233.634 174.154 1.00 32.09 ATOM 115 CZ ARG n 12 203.523 234.076 175.084 1.00 32.09 ATOM 116 NH1 ARG n 12 203.537 233.587 176.313 1.00 32.09 ATOM 117 NH2 ARG n 12 202.652 235.032 174.774 1.00 32.09 ATOM 118 N LEU n 13 208.965 228.488 172.789 1.00 40.91 ATOM 119 CA LEU n 13 210.289 227.869 172.833 1.00 40.91 ATOM 120 C LEU n 13 210.712 227.357 171.456 1.00 40.91 ATOM 121 O LEU n 13 211.895 227.434 171.098 1.00 40.91 ATOM 122 CB LEU n 13 210.311 226.739 173.864 1.00 40.91 ATOM 123 CG LEU n 13 211.666 226.051 174.054 1.00 40.91 ATOM 124 CD1 LEU n 13 212.697 227.043 174.574 1.00 40.91 ATOM 125 CD2 LEU n 13 211.560 224.846 174.973 1.00 40.91 ATOM 126 N LYS n 14 209.754 226.850 170.667 1.00 40.25 ATOM 127 CA LYS n 14 210.011 226.514 169.264 1.00 40.25 ATOM 128 C LYS n 14 210.481 227.722 168.467 1.00 40.25 ATOM 129 O LYS n 14 211.431 227.625 167.684 1.00 40.25 ATOM 130 CB LYS n 14 208.764 225.917 168.603 1.00 40.25 ATOM 131 CG LYS n 14 208.276 224.603 169.162 1.00 40.25 ATOM 132 CD LYS n 14 209.323 223.545 168.916 1.00 40.25 ATOM 133 CE LYS n 14 209.374 223.223 167.430 1.00 40.25 ATOM 134 NZ LYS n 14 210.329 222.134 167.105 1.00 40.25 ATOM 135 N ARG n 15 209.823 228.869 168.659 1.00 41.77 ATOM 136 CA ARG n 15 210.214 230.081 167.942 1.00 41.77 ATOM 137 C ARG n 15 211.602 230.560 168.358 1.00 41.77 ATOM 138 O ARG n 15 212.407 230.949 167.502 1.00 41.77 ATOM 139 CB ARG n 15 209.177 231.181 168.158 1.00 41.77 ATOM 140 CG ARG n 15 208.045 231.157 167.148 1.00 41.77 ATOM 141 CD ARG n 15 207.320 232.488 167.108 1.00 41.77 ATOM 142 NE ARG n 15 206.640 232.762 168.367 1.00 41.77 ATOM 143 CZ ARG n 15 205.363 232.491 168.599 1.00 41.77 ATOM 144 NH1 ARG n 15 204.591 231.954 167.668 1.00 41.77 ATOM 145 NH2 ARG n 15 204.848 232.764 169.794 1.00 41.77 ATOM 146 N LYS n 16 211.911 230.506 169.660 1.00 49.98 ATOM 147 CA LYS n 16 213.231 230.932 170.128 1.00 49.98 ATOM 148 C LYS n 16 214.340 230.006 169.634 1.00 49.98 ATOM 149 O LYS n 16 215.388 230.480 169.175 1.00 49.98 ATOM 150 CB LYS n 16 213.255 231.026 171.654 1.00 49.98 ATOM 151 CG LYS n 16 212.408 232.151 172.224 1.00 49.98 ATOM 152 CD LYS n 16 212.423 232.141 173.743 1.00 49.98 ATOM 153 CE LYS n 16 213.782 232.567 174.277 1.00 49.98 ATOM 154 NZ LYS n 16 214.067 234.002 173.993 1.00 49.98 ATOM 155 N ARG n 17 214.124 228.686 169.698 1.00 49.11 ATOM 156 CA ARG n 17 215.150 227.753 169.238 1.00 49.11 ATOM 157 C ARG n 17 215.303 227.787 167.721 1.00 49.11 ATOM 158 O ARG n 17 216.418 227.642 167.208 1.00 49.11 ATOM 159 CB ARG n 17 214.852 226.333 169.725 1.00 49.11 ATOM 160 CG ARG n 17 214.956 226.166 171.238 1.00 49.11 ATOM 161 CD ARG n 17 214.637 224.747 171.695 1.00 49.11 ATOM 162 NE ARG n 17 213.242 224.376 171.497 1.00 49.11 ATOM 163 CZ ARG n 17 212.761 223.155 171.692 1.00 49.11 ATOM 164 NH1 ARG n 17 213.540 222.159 172.080 1.00 49.11 ATOM 165 NH2 ARG n 17 211.465 222.929 171.497 1.00 49.11 ATOM 166 N ARG n 18 214.203 227.999 166.987 1.00 57.03 ATOM 167 CA ARG n 18 214.288 228.137 165.536 1.00 57.03 ATOM 168 C ARG n 18 215.037 229.405 165.140 1.00 57.03 ATOM 169 O ARG n 18 215.857 229.381 164.215 1.00 57.03 ATOM 170 CB ARG n 18 212.884 228.130 164.930 1.00 57.03 ATOM 171 CG ARG n 18 212.838 228.320 163.422 1.00 57.03 ATOM 172 CD ARG n 18 211.621 227.633 162.832 1.00 57.03 ATOM 173 NE ARG n 18 210.413 228.426 163.022 1.00 57.03 ATOM 174 CZ ARG n 18 209.359 228.027 163.720 1.00 57.03 ATOM 175 NH1 ARG n 18 209.331 226.846 164.315 1.00 57.03 ATOM 176 NH2 ARG n 18 208.308 228.835 163.827 1.00 57.03 ATOM 177 N LYS n 19 214.780 230.516 165.844 1.00 69.62 ATOM 178 CA LYS n 19 215.503 231.759 165.585 1.00 69.62 ATOM 179 C LYS n 19 216.988 231.616 165.897 1.00 69.62 ATOM 180 O LYS n 19 217.836 232.082 165.124 1.00 69.62 ATOM 181 CB LYS n 19 214.887 232.896 166.402 1.00 69.62 ATOM 182 CG LYS n 19 215.481 234.272 166.132 1.00 69.62 ATOM 183 CD LYS n 19 215.450 234.621 164.652 1.00 69.62 ATOM 184 CE LYS n 19 215.410 236.127 164.437 1.00 69.62 ATOM 185 NZ LYS n 19 214.494 236.808 165.394 1.00 69.62 ATOM 186 N MET n 20 217.321 230.941 167.002 1.00 77.92 ATOM 187 CA MET n 20 218.721 230.767 167.381 1.00 77.92 ATOM 188 C MET n 20 219.444 229.829 166.416 1.00 77.92 ATOM 189 O MET n 20 220.606 230.067 166.060 1.00 77.92 ATOM 190 CB MET n 20 218.790 230.236 168.814 1.00 77.92 ATOM 191 CG MET n 20 220.179 230.158 169.419 1.00 77.92 ATOM 192 SD MET n 20 220.888 231.802 169.639 1.00 77.92 ATOM 193 CE MET n 20 222.639 231.431 169.653 1.00 77.92 ATOM 194 N ARG n 21 218.755 228.776 165.959 1.00 92.81 ATOM 195 CA ARG n 21 219.322 227.845 164.987 1.00 92.81 ATOM 196 C ARG n 21 219.545 228.513 163.635 1.00 92.81 ATOM 197 O ARG n 21 220.586 228.318 162.997 1.00 92.81 ATOM 198 CB ARG n 21 218.398 226.635 164.839 1.00 92.81 ATOM 199 CG ARG n 21 218.878 225.563 163.874 1.00 92.81 ATOM 200 CD ARG n 21 219.683 224.488 164.581 1.00 92.81 ATOM 201 NE ARG n 21 220.251 223.530 163.640 1.00 92.81 ATOM 202 CZ ARG n 21 221.536 223.209 163.581 1.00 92.81 ATOM 203 NH1 ARG n 21 222.424 223.761 164.391 1.00 92.81 ATOM 204 NH2 ARG n 21 221.941 222.309 162.689 1.00 92.81 ATOM 205 N GLN n 22 218.571 229.304 163.176 1.00 88.82 ATOM 206 CA GLN n 22 218.701 229.947 161.875 1.00 88.82 ATOM 207 C GLN n 22 219.641 231.143 161.907 1.00 88.82 ATOM 208 O GLN n 22 220.151 231.537 160.853 1.00 88.82 ATOM 209 CB GLN n 22 217.326 230.371 161.356 1.00 88.82 ATOM 210 CG GLN n 22 216.430 229.203 160.971 1.00 88.82 ATOM 211 CD GLN n 22 215.070 229.651 160.476 1.00 88.82 ATOM 212 OE1 GLN n 22 214.783 230.846 160.412 1.00 88.82 ATOM 213 NE2 GLN n 22 214.224 228.691 160.121 1.00 88.82 ATOM 214 N ARG n 23 219.886 231.729 163.078 1.00 91.95 ATOM 215 CA ARG n 23 220.872 232.794 163.176 1.00 91.95 ATOM 216 C ARG n 23 222.252 232.289 163.575 1.00 91.95 ATOM 217 O ARG n 23 223.204 233.077 163.580 1.00 91.95 ATOM 218 CB ARG n 23 220.401 233.861 164.169 1.00 91.95 ATOM 219 CG ARG n 23 219.269 234.741 163.646 1.00 91.95 ATOM 220 CD ARG n 23 219.731 235.684 162.541 1.00 91.95 ATOM 221 NE ARG n 23 219.437 235.162 161.210 1.00 91.95 ATOM 222 CZ ARG n 23 218.282 235.325 160.579 1.00 91.95 ATOM 223 NH1 ARG n 23 217.282 235.992 161.130 1.00 91.95 ATOM 224 NH2 ARG n 23 218.127 234.804 159.365 1.00 91.95 ATOM 225 N SER n 24 222.386 231.005 163.905 1.00 96.09 ATOM 226 CA SER n 24 223.681 230.392 164.177 1.00 96.09 ATOM 227 C SER n 24 224.128 229.493 163.026 1.00 96.09 ATOM 228 O SER n 24 224.770 228.463 163.234 1.00 96.09 ATOM 229 CB SER n 24 223.641 229.604 165.482 1.00 96.09 ATOM 230 OG SER n 24 223.206 230.427 166.547 1.00 96.09 ATOM 231 N LYS n 25 223.792 229.876 161.799 1.00 97.99 ATOM 232 CA LYS n 25 224.155 229.084 160.630 1.00 97.99 ATOM 233 C LYS n 25 225.597 229.344 160.208 1.00 97.99 ATOM 234 O LYS n 25 226.236 228.489 159.594 1.00 97.99 ATOM 235 CB LYS n 25 223.205 229.381 159.468 1.00 97.99 ATOM 236 CG LYS n 25 221.818 228.789 159.645 1.00 97.99 ATOM 237 CD LYS n 25 221.836 227.279 159.473 1.00 97.99 ATOM 238 CE LYS n 25 220.560 226.649 160.008 1.00 97.99 ATOM 239 NZ LYS n 25 220.794 225.282 160.548 1.00 97.99 TER